endoreg-db 0.8.9.2__py3-none-any.whl → 0.8.9.10__py3-none-any.whl

endoreg_db/views/media/__init__.py

@@ -4,7 +4,7 @@ from .video_media import VideoMediaView
 from .pdf_media import PdfMediaView
 from ..video.reimport import VideoReimportView
 from ..report.reimport import ReportReimportView
-from ..ai.label import label_list
+from endoreg_db.views.video.ai.label import label_list
 
 from .sensitive_metadata import (
     get_sensitive_metadata_pk,
@@ -17,16 +17,16 @@ from .sensitive_metadata import (
 )
 
 __all__ = [
-    'VideoMediaView',
-    'PdfMediaView',
-    'VideoReimportView',
-    'ReportReimportView',
-    'get_sensitive_metadata_pk',
-    'video_sensitive_metadata',
-    'video_sensitive_metadata_verify',
-    'pdf_sensitive_metadata',
-    'pdf_sensitive_metadata_verify',
-    'sensitive_metadata_list',
-    'pdf_sensitive_metadata_list',
-    'label_list',
+    "VideoMediaView",
+    "PdfMediaView",
+    "VideoReimportView",
+    "ReportReimportView",
+    "get_sensitive_metadata_pk",
+    "video_sensitive_metadata",
+    "video_sensitive_metadata_verify",
+    "pdf_sensitive_metadata",
+    "pdf_sensitive_metadata_verify",
+    "sensitive_metadata_list",
+    "pdf_sensitive_metadata_list",
+    "label_list",
 ]

endoreg_db/views/media/pdf_media.py

@@ -4,7 +4,7 @@ report Media Management View (Phase 1.2)
 Provides standardized REST API for report files including listing, detail retrieval,
 and streaming for the media management system.
 
-This is separate from the existing pdf.PDFMediaView which handles legacy workflows.
+This is separate from the existing pdf.reportMediaView which handles legacy workflows.
 """
 
 import logging
@@ -30,9 +30,9 @@ class PdfMediaView(APIView):
     report Media Management API for CRUD operations on report files.
 
     Endpoints:
-    - GET /api/media/pdfs/ - List all PDFs with filtering
+    - GET /api/media/pdfs/ - List all reports with filtering
     - GET /api/media/pdfs/{id}/ - Get report details
-    - GET /api/media/pdfs/{id}/stream/ - Stream report file (same as detail for PDFs)
+    - GET /api/media/pdfs/{id}/stream/ - Stream report file (same as detail for reports)
     - PATCH /api/media/pdfs/{id}/ - Update report metadata (future)
     - DELETE /api/media/pdfs/{id}/ - Delete report (future)
 
@@ -216,7 +216,7 @@ class PdfMediaView(APIView):
 
     def _list_pdfs(self, request):
         """
-        List PDFs with filtering, search, and pagination.
+        List reports with filtering, search, and pagination.
 
         Args:
             request: HTTP request with query parameters
@@ -225,7 +225,7 @@ class PdfMediaView(APIView):
             Response: JSON response with paginated report list
         """
         try:
-            # Start with all PDFs
+            # Start with all reports
             queryset = RawPdfFile.objects.select_related("sensitive_meta").all()
 
             # Apply filters
@@ -249,7 +249,7 @@ class PdfMediaView(APIView):
             total_count = queryset.count()
             pdfs = queryset[offset : offset + limit]
 
-            # Serialize PDFs manually (no dedicated serializer yet)
+            # Serialize reports manually (no dedicated serializer yet)
             results = []
             for pdf in pdfs:
                 pdf_item = {
@@ -334,12 +334,12 @@ class PdfMediaView(APIView):
 
         if status_filter:
             if status_filter == "not_started":
-                # PDFs without anonymized text
+                # reports without anonymized text
                 queryset = queryset.filter(
                     Q(anonymized_text__isnull=True) | Q(anonymized_text__exact="")
                 )
             elif status_filter == "done":
-                # PDFs with anonymized text but not validated
+                # reports with anonymized text but not validated
                 queryset = queryset.filter(
                     ~Q(anonymized_text__isnull=True),
                     ~Q(anonymized_text__exact=""),
@@ -347,7 +347,7 @@ class PdfMediaView(APIView):
                     | Q(sensitive_meta__isnull=True),
                 )
             elif status_filter == "validated":
-                # PDFs with anonymized text and validated
+                # reports with anonymized text and validated
                 queryset = queryset.filter(
                     ~Q(anonymized_text__isnull=True),
                     ~Q(anonymized_text__exact=""),

endoreg_db/views/media/sensitive_metadata.py

@@ -1,9 +1,11 @@
 # Modern Media Framework: Sensitive Metadata Management
-import string
 
 from django.db import transaction
 from django.db.models import Q
 from django.shortcuts import get_object_or_404
+import json
+import logging
+
 from numpy import number
 from rest_framework import status
 from rest_framework.decorators import api_view, permission_classes
@@ -15,7 +17,7 @@ from endoreg_db.serializers.meta import (
     SensitiveMetaUpdateSerializer,
 )
 from endoreg_db.utils.permissions import EnvironmentAwarePermission
-
+logger = logging.getLogger(__name__)    
 # === VIDEO SENSITIVE METADATA ===
 
 
@@ -190,7 +192,8 @@ def pdf_sensitive_metadata(request, pk):
         if serializer.is_valid():
             updated_instance = serializer.save()
             response_serializer = SensitiveMetaDetailSerializer(updated_instance)
-
+            sensitive_meta.update_from_dict(response_serializer.data)
+            logger.info("Updated sensitive metadata: %s", json.dumps(response_serializer.data))
             return Response(
                 {
                     "message": "Sensitive metadata updated successfully",
@@ -269,7 +272,7 @@ def sensitive_metadata_list(request):
     """
     GET /api/media/sensitive-metadata/
 
-    List all sensitive metadata (combined PDFs and Videos).
+    List all sensitive metadata (combined reports and Videos).
     Supports filtering by content_type, status, etc.
 
     Query parameters:
@@ -286,7 +289,7 @@ def sensitive_metadata_list(request):
     # Filter by content type
     content_type = request.query_params.get("content_type")
     if content_type == "pdf":
-        # Only PDFs - filter by existence of related PDFs
+        # Only reports - filter by existence of related reports
         queryset = queryset.filter(raw_pdf_files__isnull=False).distinct()
     elif content_type == "video":
         # Only Videos - filter by existence of related video
@@ -331,12 +334,12 @@ def pdf_sensitive_metadata_list(request):
     """
     GET /api/media/pdfs/sensitive-metadata/
 
-    List sensitive metadata for PDFs only.
+    List sensitive metadata for reports only.
     Replaces legacy /api/pdf/sensitivemeta/list/
     """
     from endoreg_db.serializers.meta import SensitiveMetaDetailSerializer
 
-    # Get all PDFs with sensitive metadata
+    # Get all reports with sensitive metadata
     queryset = (
         SensitiveMeta.objects.select_related("state")
         .filter(raw_pdf_files__isnull=False)

endoreg_db/views/media/video_media.py

@@ -18,8 +18,8 @@ from rest_framework.views import APIView
 from endoreg_db.models import VideoFile
 from endoreg_db.serializers.video.video_file_detail import VideoDetailSerializer
 from endoreg_db.serializers.video.video_file_list import VideoFileListSerializer
-from endoreg_db.utils.permissions import EnvironmentAwarePermission
-#for keycloak
+
+# for keycloak
 from rest_framework.permissions import IsAuthenticated
 from endoreg_db.authz.permissions import PolicyPermission
 
@@ -54,8 +54,8 @@ class VideoMediaView(APIView):
     - Integration with existing serializers
     """
 
-    #permission_classes = [EnvironmentAwarePermission]
-        #permission_classes = [EnvironmentAwarePermission]
+    # permission_classes = [EnvironmentAwarePermission]
+    # permission_classes = [EnvironmentAwarePermission]
     permission_classes = [IsAuthenticated, PolicyPermission]
 
     def get(self, request, pk=None):

endoreg_db/views/meta/__init__.py

@@ -4,4 +4,4 @@ from .sensitive_meta_verification import SensitiveMetaVerificationView
 __all__ = [
     "SensitiveMetaListView",
     "SensitiveMetaVerificationView",
-]
+]

endoreg_db/views/meta/sensitive_meta_list.py

@@ -1,5 +1,7 @@
 from endoreg_db.models import SensitiveMeta
-from endoreg_db.serializers.meta.sensitive_meta_detail import SensitiveMetaDetailSerializer
+from endoreg_db.serializers.meta.sensitive_meta_detail import (
+    SensitiveMetaDetailSerializer,
+)
 
 from rest_framework import status
 from rest_framework.response import Response
@@ -17,7 +19,7 @@ class SensitiveMetaListView(APIView):
     GET: Returns paginated list of SensitiveMeta entries
     """
 
-    permission_classes = DEBUG_PERMISSIONS  
+    permission_classes = DEBUG_PERMISSIONS
 
     def get(self, request):
         """
@@ -32,41 +34,37 @@ class SensitiveMetaListView(APIView):
         try:
             # Base queryset with related data
             queryset = SensitiveMeta.objects.select_related(
-                'center',
-                'patient_gender',
-                'state'
-            ).prefetch_related('examiners')
+                "center", "patient_gender", "state"
+            ).prefetch_related("examiners")
 
             # Apply filters
-            verified_filter = request.query_params.get('verified')
+            verified_filter = request.query_params.get("verified")
             if verified_filter is not None:
-                if verified_filter.lower() == 'true':
+                if verified_filter.lower() == "true":
                     # Filter for entries where both DOB and names are verified
                     queryset = queryset.filter(
-                        state__dob_verified=True,
-                        state__names_verified=True
+                        state__dob_verified=True, state__names_verified=True
                     )
-                elif verified_filter.lower() == 'false':
+                elif verified_filter.lower() == "false":
                     # Filter for entries that are not fully verified
                     queryset = queryset.exclude(
-                        state__dob_verified=True,
-                        state__names_verified=True
+                        state__dob_verified=True, state__names_verified=True
                     )
 
-            center_filter = request.query_params.get('center')
+            center_filter = request.query_params.get("center")
             if center_filter:
                 queryset = queryset.filter(center__name__icontains=center_filter)
 
             # Pagination
             try:
-                limit = int(request.query_params.get('limit', 10))
+                limit = int(request.query_params.get("limit", 10))
                 if limit < 0:
                     limit = 10
             except (ValueError, TypeError):
                 limit = 10
-            
+
             try:
-                offset = int(request.query_params.get('offset', 0))
+                offset = int(request.query_params.get("offset", 0))
                 if offset < 0:
                     offset = 0
             except (ValueError, TypeError):
@@ -76,7 +74,7 @@ class SensitiveMetaListView(APIView):
             if limit > 100:
                 limit = 100
 
-            paginated_queryset = queryset[offset:offset + limit]
+            paginated_queryset = queryset[offset : offset + limit]
 
             # Serialize results
             serializer = SensitiveMetaDetailSerializer(paginated_queryset, many=True)
@@ -86,7 +84,7 @@ class SensitiveMetaListView(APIView):
                 "total_count": queryset.count(),
                 "limit": limit,
                 "offset": offset,
-                "has_more": (offset + limit) < queryset.count()
+                "has_more": (offset + limit) < queryset.count(),
             }
 
             return Response(response_data, status=status.HTTP_200_OK)
@@ -94,11 +92,11 @@ class SensitiveMetaListView(APIView):
         except ValueError as e:
             return Response(
                 {"error": f"Invalid query parameters: {e}"},
-                status=status.HTTP_400_BAD_REQUEST
+                status=status.HTTP_400_BAD_REQUEST,
             )
         except Exception as e:
             logger.error(f"Error listing SensitiveMeta entries: {e}")
             return Response(
                 {"error": "Internal server error occurred"},
-                status=status.HTTP_500_INTERNAL_SERVER_ERROR
-            )
+                status=status.HTTP_500_INTERNAL_SERVER_ERROR,
+            )

endoreg_db/views/meta/sensitive_meta_verification.py

@@ -1,5 +1,8 @@
 from endoreg_db.models import SensitiveMeta
-from endoreg_db.serializers.meta import SensitiveMetaDetailSerializer, SensitiveMetaVerificationSerializer
+from endoreg_db.serializers.meta import (
+    SensitiveMetaDetailSerializer,
+    SensitiveMetaVerificationSerializer,
+)
 
 from django.db import transaction
 from rest_framework import status
@@ -10,6 +13,7 @@ import logging
 
 logger = logging.getLogger(__name__)
 
+
 class SensitiveMetaVerificationView(APIView):
     """
     API endpoint specifically for updating verification state.
@@ -17,7 +21,9 @@ class SensitiveMetaVerificationView(APIView):
     POST: Update verification flags (dob_verified, names_verified) for a SensitiveMeta
     """
 
-    permission_classes = DEBUG_PERMISSIONS  # Changed from IsAuthenticated for development
+    permission_classes = (
+        DEBUG_PERMISSIONS  # Changed from IsAuthenticated for development
+    )
 
     @transaction.atomic
     def post(self, request):
@@ -36,7 +42,7 @@ class SensitiveMetaVerificationView(APIView):
         if serializer.is_valid():
             try:
                 state = serializer.save()
-                sensitive_meta_id = serializer.validated_data['sensitive_meta_id']
+                sensitive_meta_id = serializer.validated_data["sensitive_meta_id"]
 
                 # Get updated SensitiveMeta for response
                 sensitive_meta = SensitiveMeta.objects.get(id=sensitive_meta_id)
@@ -45,7 +51,7 @@ class SensitiveMetaVerificationView(APIView):
                 response_data = {
                     "message": "Verification state updated successfully",
                     "sensitive_meta": response_serializer.data,
-                    "state_verified": state.is_verified
+                    "state_verified": state.is_verified,
                 }
 
                 logger.info(
@@ -59,13 +65,10 @@ class SensitiveMetaVerificationView(APIView):
                 logger.error(f"Error in verification update: {e}")
                 return Response(
                     {"error": f"Failed to update verification state: {e}"},
-                    status=status.HTTP_500_INTERNAL_SERVER_ERROR
+                    status=status.HTTP_500_INTERNAL_SERVER_ERROR,
                 )
         else:
             return Response(
-                {
-                    "error": "Validation failed",
-                    "details": serializer.errors
-                },
-                status=status.HTTP_400_BAD_REQUEST
-            )
+                {"error": "Validation failed", "details": serializer.errors},
+                status=status.HTTP_400_BAD_REQUEST,
+            )

endoreg_db/views/misc/__init__.py

@@ -8,18 +8,6 @@ from .stats import (
     GeneralStatsView,
 )
 
-
-from .translation import (
-    ExaminationTranslationOptions,
-    FindingTranslationOptions,
-    FindingClassificationTranslationOptions,
-    FindingClassificationChoiceTranslationOptions,
-    InterventionTranslationOptions,
-    TranslatedFieldMixin,
-    TranslationMigrationHelper,
-    TranslatedFixtureLoader,
-    MODELTRANSLATION_SETTINGS
-)
 from .upload_views import (
     UploadFileView,
     UploadStatusView,
@@ -27,31 +15,15 @@ from .upload_views import (
 
 __all__ = [
     "CenterViewSet",
-    'csrf_token_view',
-
+    "csrf_token_view",
     # Gender view
     "GenderViewSet",
-
     # Stats views
-    'ExaminationStatsView',
-    'VideoSegmentStatsView',
-    'SensitiveMetaStatsView',
+    "ExaminationStatsView",
+    "VideoSegmentStatsView",
+    "SensitiveMetaStatsView",
     "GeneralStatsView",
-
-
-    # Translation options
-    'ExaminationTranslationOptions',
-    'FindingTranslationOptions',
-    'FindingClassificationTranslationOptions',
-    'FindingClassificationChoiceTranslationOptions',
-    'InterventionTranslationOptions',
-    'TranslatedFieldMixin',
-    'TranslationMigrationHelper',
-    'TranslatedFixtureLoader',
-    'MODELTRANSLATION_SETTINGS',
-
     # Upload views
-    'UploadFileView',
-    'UploadStatusView',
-
+    "UploadFileView",
+    "UploadStatusView",
 ]

endoreg_db/views/misc/center.py

@@ -8,6 +8,7 @@ from rest_framework import viewsets
 
 class CenterViewSet(viewsets.ReadOnlyModelViewSet):
     """API endpoint für Center-Optionen (nur lesend)"""
+
     queryset = Center.objects.all()
     serializer_class = CenterSerializer
-    permission_classes = DEBUG_PERMISSIONS
+    permission_classes = DEBUG_PERMISSIONS

endoreg_db/views/misc/csrf.py

@@ -1,7 +1,8 @@
 from django.http import JsonResponse
 from django.middleware.csrf import get_token
 
+
 # New view to return the CSRF token in JSON format
 def csrf_token_view(request):
     token = get_token(request)
-    return JsonResponse({'csrf_token': token})
+    return JsonResponse({"csrf_token": token})

endoreg_db/views/misc/gender.py

@@ -9,6 +9,7 @@ class GenderViewSet(viewsets.ReadOnlyModelViewSet):
     API endpoint for Gender options.
     Provides read-only access to gender choices for patient forms.
     """
+
     queryset = Gender.objects.all()
     serializer_class = GenderSerializer
-    permission_classes = [IsAuthenticatedOrReadOnly]
+    permission_classes = [IsAuthenticatedOrReadOnly]