endoreg-db 0.6.2__py3-none-any.whl → 0.6.4__py3-none-any.whl

endoreg_db/data/finding_intervention/endoscopy_ercp.yaml

@@ -0,0 +1,32 @@
+- model: endoreg_db.finding_intervention
+  fields:
+    name: ercp
+    # ...existing code...
+- model: endoreg_db.finding_intervention
+  fields:
+    name: ercp_sphincterotomy
+    # ...existing code...
+- model: endoreg_db.finding_intervention
+  fields:
+    name: ercp_stent
+    # ...existing code...
+- model: endoreg_db.finding_intervention
+  fields:
+    name: ercp_extraction
+    # ...existing code...
+- model: endoreg_db.finding_intervention
+  fields:
+    name: ercp_biopsy
+    # ...existing code...
+- model: endoreg_db.finding_intervention
+  fields:
+    name: erc
+    # ...existing code...
+- model: endoreg_db.finding_intervention
+  fields:
+    name: erp
+    # ...existing code...
+- model: endoreg_db.finding_intervention
+  fields:
+    name: ercp_radiofrequency_ablation
+    # ...existing code...

endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml

@@ -0,0 +1,9 @@
+# (currently no interventions)
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endosonography_lower_gi_solid_lesion_fna
+
+# endosonography_lower_gi_lymph_node_fna
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endosonography_lower_gi_lymph_node_fna

endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml

@@ -0,0 +1,36 @@
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endosonography_upper_gi_solid_lesion_fna
+    # ...existing code...
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endosonography_upper_gi_cyst_fna
+    # ...existing code...
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endosonography_upper_gi_pseudocyst_fna
+    # ...existing code...
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endosonography_upper_gi_biliary_drainage
+    # ...existing code...
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endosonography_upper_gi_pancreatic_drainage
+    # ...existing code...
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endosonography_upper_gi_cyst_gastrostomy
+    # ...existing code...
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endosonography_upper_gi_pancreaticogastrostomy
+    # ...existing code...
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endosonography_upper_gi_cholangioduodenostomy
+    # ...existing code...
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endosonography_upper_gi_pancreaticoduodenostomy
+    # ...existing code...

endoreg_db/data/information_source/endoscopy_guidelines.yaml

@@ -0,0 +1,7 @@
+- model: endoreg_db.InformationSource
+  fields:
+    name: "guideline_quality_in_gi"
+    name_de: "Qualitätsanforderungen in der gastrointestinalen Endoskopie v2.0"
+    name_en: "Quality requirements in gastrointestinal endoscopy v2.0"
+    date: "2025-01-01" # not final
+    #TODO Implement information_source

endoreg_db/data/medication_indication/anticoagulation.yaml

@@ -2,7 +2,7 @@
 - model: endoreg_db.medication_indication
   fields:
     name: "te_prevention-after_hip-apixaban"
-    events: ["hip_replacement"]
+    events: ["hip_replacement_surgery"]
     diseases: []
     disease_classification_choices: []
     medication_schedules: [
@@ -14,7 +14,7 @@
 - model: endoreg_db.medication_indication
   fields:
     name: "te_prevention-after_knee-apixaban"
-    events: ["knee_replacement"]
+    events: ["knee_replacement_surgery"]
     diseases: []
     disease_classification_choices: []
     medication_schedules: [
@@ -27,7 +27,7 @@
   fields:
     name: "te_prevention-non_valvular_af-apixaban"
     events: []
-    diseases: ["non_valvular_af"]
+    diseases: ["non_valvular_atrial_fibrillation"]
     disease_classification_choices: []
     medication_schedules: [
         "apixaban-5mg-twice_daily", # no limit
@@ -55,7 +55,7 @@
   fields:
     name: "te_prevention-non_valvular_af-apixaban-dr" #dr = dose reduction
     events: []
-    diseases: ["non_valvular_af"]
+    diseases: ["non_valvular_atrial_fibrillation"]
     disease_classification_choices: []
     medication_schedules: [
         "apixaban-2.5mg-twice_daily", # no limit

endoreg_db/data/pdf_type/data.yaml

@@ -1,19 +1,16 @@
-
 - model: endoreg_db.pdf_type
   fields:
     name: "ukw-endoscopy-examination-report-generic"
     patient_info_line: "ukw-examination-generic-patient-info-line"
     endoscope_info_line: "ukw-examination-generic-endoscope-info-line"
     examiner_info_line: "ukw-examination-generic-examiner-info-line"
-    cut_off_above_lines: [
-      "ukw-examination-generic-anamnese-info-line",
-      "ukw-examination-generic-endoscope-info-line",
-      "ukw-examination-generic-examiner-info-line",
-    ]
-    cut_off_below_lines: [
-      "ukw-examination-generic-cut-off-below-line-01"
-    ]
-
+    cut_off_above_lines:
+      [
+        "ukw-examination-generic-anamnese-info-line",
+        "ukw-examination-generic-endoscope-info-line",
+        "ukw-examination-generic-examiner-info-line",
+      ]
+    cut_off_below_lines: ["ukw-examination-generic-cut-off-below-line-01"]
 
 - model: endoreg_db.pdf_type
   fields:
@@ -21,9 +18,5 @@
     patient_info_line: "ukw-histology-generic-patient-info-line"
     endoscope_info_line: "ukw-histology-generic-endoscope-info-line"
     examiner_info_line: "ukw-histology-generic-examiner-info-line"
-    cut_off_above_lines: [
-      "ukw-histology-generic-patient-info-line"
-    ]
-    cut_off_below_lines: [
-      "ukw-endoscopy-histology-cut-off-below-line-flag-01"
-    ]
+    cut_off_above_lines: ["ukw-histology-generic-patient-info-line"]
+    cut_off_below_lines: ["ukw-histology-generic-cut-off-below-line-01"]

endoreg_db/data/requirement/colonoscopy_indications.yaml

@@ -0,0 +1,56 @@
+- model: endoreg_db.requirement
+  fields:
+    name: "endoscopy_intervention_bleeding_risk_high"
+    name_de: "Endoskopische Intervention - Blutungsrisiko: hoch"
+    name_en: "Endoscopy Intervention - Bleeding Risk: High"
+    description: "Endoskopische Intervention - Blutungsrisiko: hoch"
+    requirement_types:
+      - "patient_examination"
+    operators:
+      - "models_match_any"
+    finding_interventions:
+      - "egd_lesion_polypectomy_cold_snare"
+      - "egd_lesion_polypectomy_hot_snare"
+      - "colon_lesion_polypectomy_cold_snare"
+      - "colon_lesion_polypectomy_hot_snare"
+      - "egd_lesion_emr"
+      - "egd_lesion_esd"
+      - "egd_poem"
+      - "ercp_sphincterotomy"
+      - "egd_varice_band_ligation"
+      - "egd_varice_sclerotherapy"
+      - "egd_percutaneous_gastroenterostomy"
+      - "percutaneous_transhepatic_cholangiography"
+      - "percutaneous_transhepatic_biliary_drainage"
+      - "ercp_radiofrequency_ablation"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "endoscopy_intervention_bleeding_risk_low"
+    name_de: "Endoskopische Intervention - Blutungsrisiko: niedrig"
+    name_en: "Endoscopy Intervention - Bleeding Risk: Low"
+    description: "Endoskopische Intervention - Blutungsrisiko: niedrig"
+    requirement_types:
+      - "patient_examination"
+    operators:
+      - "models_match_any"
+    finding_interventions:
+      - "egd_lesion_biopsy"
+      - "colon_lesion_biopsy"
+      - "ercp"
+      - "egd_argon_plasma_coagulation"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "indication_is_colon_emr"
+    name_de: "Indikation Kolon EMR"
+    name_en: "Indication colon EMR"
+    description: "This functions evaluates whether the input ()"
+    requirement_types:
+      - "finding_intervention"
+    operators:
+      - "models_match_any"
+    # when creating a requirement involving other models,
+    # we need to create the relationship here:
+    examination_indications:
+      - "colonoscopy_lesion_removal_emr"

endoreg_db/data/requirement/disease_cardiovascular.yaml

@@ -0,0 +1,79 @@
+# KHK
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_coronary_artery_disease"
+    name_de: "Koronare Gefäßerkrankung"
+    name_en: "Coronary artery disease"
+    description: "Coronary artery disease"
+    requirement_types:
+      - "disease"
+    operators:
+      - models_match_all
+    diseases:
+      - "coronary_artery_disease"
+
+# Hypertension
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_hypertension"
+    name_de: "Arterielle Hypertonie"
+    name_en: "Hypertension"
+    description: "Hypertension"
+    requirement_types:
+      - "disease"
+    operators:
+      - models_match_all
+    diseases:
+      - "hypertension"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_congestive_heart_failure"
+    name_de: "Chron. Herzinsuffizienz"
+    name_en: "Congestive heart failure"
+    description: "Congestive heart failure"
+    requirement_types:
+      - "disease"
+    operators:
+      - models_match_all
+    diseases:
+      - "congestive_heart_failure"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_diabetes_mellitus_I"
+    name_de: "Diabetes mellitus Typ I"
+    name_en: "Diabetes mellitus type I"
+    description: "Diabetes mellitus type I"
+    requirement_types:
+      - "disease"
+    operators:
+      - models_match_all
+    diseases:
+      - "diabetes_mellitus_I"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_diabetes_mellitus_II"
+    name_de: "Diabetes mellitus Typ II"
+    name_en: "Diabetes mellitus type II"
+    description: "Diabetes mellitus type II"
+    requirement_types:
+      - "disease"
+    operators:
+      - models_match_all
+    diseases:
+      - "diabetes_mellitus_II"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_non_valvular_atrial_fibrillation"
+    name_de: "Nicht valvuläres Vorhofflimmern"
+    name_en: "Non valvular atrial fibrillation"
+    description: "Non valvular atrial fibrillation"
+    requirement_types:
+      - "disease"
+    operators:
+      - models_match_all
+    diseases:
+      - "non_valvular_atrial_fibrillation"

endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml

@@ -0,0 +1,38 @@
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_coronary_artery_disease_1_vessel"
+    name_de: "Koronare Gefäßerkrankung (1-Gefäß-Erkrankung)"
+    name_en: "Coronary artery disease (1-vessel disease)"
+    description: "Coronary artery disease (1-vessel disease)"
+    requirement_types:
+      - "disease_classification_choice"
+    operators:
+      - models_match_all
+    disease_classification_choices:
+      - "khk_1_ge"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_coronary_artery_disease_2_vessel"
+    name_de: "Koronare Gefäßerkrankung (2-Gefäß-Erkrankung)"
+    name_en: "Coronary artery disease (2-vessel disease)"
+    description: "Coronary artery disease (2-vessel disease)"
+    requirement_types:
+      - "disease_classification_choice"
+    operators:
+      - models_match_all
+    disease_classification_choices:
+      - "khk_2_ge"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_coronary_artery_disease_3_vessel"
+    name_de: "Koronare Gefäßerkrankung (3-Gefäß-Erkrankung)"
+    name_en: "Coronary artery disease (3-vessel disease)"
+    description: "Coronary artery disease (3-vessel disease)"
+    requirement_types:
+      - "disease_classification_choice"
+    operators:
+      - models_match_all
+    disease_classification_choices:
+      - "khk_3_ge"

endoreg_db/data/requirement/disease_hepatology.yaml

@@ -0,0 +1,12 @@
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_liver_cirrhosis"
+    name_de: "Erkrankung Leberzirrhose"
+    name_en: "Disease Liver Cirrhosis"
+    description: "Disease Liver Cirrhosis"
+    requirement_types:
+      - "disease"
+    operators:
+      - models_match_all
+    diseases:
+      - "liver_cirrhosis"

endoreg_db/data/requirement/disease_misc.yaml

@@ -0,0 +1,12 @@
+- model: endoreg_db.requirement
+  fields:
+    name: "malignoma_unspecified"
+    name_de: "Malignom, nicht näher bezeichnet"
+    name_en: "Malignoma, unspecified"
+    description: "Malignoma, unspecified"
+    requirement_types:
+      - "disease"
+    operators:
+      - models_match_all
+    diseases:
+      - "malignoma_unspecified"

endoreg_db/data/requirement/disease_renal.yaml

@@ -0,0 +1,80 @@
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_chronic_kidney_disease"
+    name_de: "Erkrankung chronische Nierenerkrankung"
+    name_en: "Disease Chronic Kidney Disease"
+    description: "Disease Chronic Kidney Disease"
+    requirement_types:
+      - "disease"
+    operators:
+      - models_match_all
+    diseases:
+      - "chronic_kidney_disease"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_classification_choice_is_ckd_kdigo_1"
+    name_de: "Erkrankung Klassifikation chronische Nierenerkrankung (KDIGO) (Stadium 1)"
+    name_en: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 1)"
+    description: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 1)"
+    requirement_types:
+      - "disease_classification_choice"
+    operators:
+      - models_match_all
+    disease_classification_choices:
+      - "ckd_kdigo_1"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_classification_choice_is_ckd_kdigo_2"
+    name_de: "Erkrankung Klassifikation chronische Nierenerkrankung (KDIGO) (Stadium 2)"
+    name_en: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 2)"
+    description: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 2)"
+    operators:
+      - models_match_all
+    disease_classification_choices:
+      - "ckd_kdigo_2"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_classification_choice_is_ckd_kdigo_3a"
+    name_de: "Erkrankung Klassifikation chronische Nierenerkrankung (KDIGO) (Stadium 3a)"
+    name_en: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 3a)"
+    description: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 3a)"
+    operators:
+      - models_match_all
+    disease_classification_choices:
+      - "ckd_kdigo_3a"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_classification_choice_is_ckd_kdigo_3b"
+    name_de: "Erkrankung Klassifikation chronische Nierenerkrankung (KDIGO) (Stadium 3b)"
+    name_en: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 3b)"
+    description: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 3b)"
+    operators:
+      - models_match_all
+    disease_classification_choices:
+      - "ckd_kdigo_3b"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_classification_choice_is_ckd_kdigo_4"
+    name_de: "Erkrankung Klassifikation chronische Nierenerkrankung (KDIGO) (Stadium 4)"
+    name_en: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 4)"
+    description: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 4)"
+    operators:
+      - models_match_all
+    disease_classification_choices:
+      - "ckd_kdigo_4"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_classification_choice_is_ckd_kdigo_5"
+    name_de: "Erkrankung Klassifikation chronische Nierenerkrankung (KDIGO) (Stadium 5)"
+    name_en: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 5)"
+    description: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 5)"
+    operators:
+      - models_match_all
+    disease_classification_choices:
+      - "ckd_kdigo_5"