endoreg-db 0.6.0__py3-none-any.whl → 0.6.1__py3-none-any.whl

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Files changed (416) hide show
  1. endoreg_db/case_generator/__init__.py +0 -0
  2. endoreg_db/case_generator/case_generator.py +159 -0
  3. endoreg_db/case_generator/lab_sample_factory.py +33 -0
  4. endoreg_db/case_generator/utils.py +30 -0
  5. endoreg_db/data/__init__.py +118 -0
  6. endoreg_db/data/agl_service/data.yaml +19 -0
  7. endoreg_db/data/ai_model/data.yaml +7 -0
  8. endoreg_db/data/ai_model_label/label/data.yaml +88 -0
  9. endoreg_db/data/ai_model_label/label-set/data.yaml +21 -0
  10. endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
  11. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +5 -0
  12. endoreg_db/data/ai_model_type/data.yaml +7 -0
  13. endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
  14. endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
  15. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  16. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  17. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  18. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  19. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  20. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  21. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  22. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  23. endoreg_db/data/case_template/rule_value/.init +0 -0
  24. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  25. endoreg_db/data/case_template/template/base.yaml +8 -0
  26. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  27. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  28. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  29. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  30. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  31. endoreg_db/data/center/data.yaml +90 -0
  32. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  33. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  34. endoreg_db/data/contraindication/bleeding.yaml +11 -0
  35. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  36. endoreg_db/data/disease/hepatology.yaml +5 -0
  37. endoreg_db/data/disease/misc.yaml +6 -0
  38. endoreg_db/data/disease/renal.yaml +5 -0
  39. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  40. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  41. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  42. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  43. endoreg_db/data/distribution/date/patient.yaml +7 -0
  44. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  45. endoreg_db/data/distribution/numeric/data.yaml +14 -0
  46. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  47. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  48. endoreg_db/data/endoscope/data.yaml +93 -0
  49. endoreg_db/data/endoscope_type/data.yaml +11 -0
  50. endoreg_db/data/endoscopy_processor/data.yaml +47 -0
  51. endoreg_db/data/event/cardiology.yaml +28 -0
  52. endoreg_db/data/event/neurology.yaml +14 -0
  53. endoreg_db/data/event/surgery.yaml +13 -0
  54. endoreg_db/data/event/thrombembolism.yaml +20 -0
  55. endoreg_db/data/examination/examinations/data.yaml +66 -0
  56. endoreg_db/data/examination/time/data.yaml +48 -0
  57. endoreg_db/data/examination/time-type/data.yaml +8 -0
  58. endoreg_db/data/examination/type/data.yaml +5 -0
  59. endoreg_db/data/examination_indication/endoscopy.yaml +8 -0
  60. endoreg_db/data/examination_indication_classification/endoscopy.yaml +8 -0
  61. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +101 -0
  62. endoreg_db/data/finding/data.yaml +141 -0
  63. endoreg_db/data/finding_intervention/endoscopy.yaml +138 -0
  64. endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
  65. endoreg_db/data/finding_location_classification/colonoscopy.yaml +46 -0
  66. endoreg_db/data/finding_location_classification_choice/colonoscopy.yaml +240 -0
  67. endoreg_db/data/finding_morphology_classification/colonoscopy.yaml +48 -0
  68. endoreg_db/data/finding_morphology_classification_choice/colon_lesion_circularity_default.yaml +34 -0
  69. endoreg_db/data/finding_morphology_classification_choice/colon_lesion_nice.yaml +20 -0
  70. endoreg_db/data/finding_morphology_classification_choice/colon_lesion_paris.yaml +65 -0
  71. endoreg_db/data/finding_morphology_classification_choice/colon_lesion_planarity_default.yaml +56 -0
  72. endoreg_db/data/finding_morphology_classification_choice/colon_lesion_surface_intact_default.yaml +39 -0
  73. endoreg_db/data/finding_morphology_classification_choice/colonoscopy_size.yaml +57 -0
  74. endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +79 -0
  75. endoreg_db/data/finding_type/data.yaml +30 -0
  76. endoreg_db/data/gender/data.yaml +35 -0
  77. endoreg_db/data/information_source/data.yaml +30 -0
  78. endoreg_db/data/information_source/medication.yaml +6 -0
  79. endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
  80. endoreg_db/data/lab_value/coagulation.yaml +54 -0
  81. endoreg_db/data/lab_value/electrolytes.yaml +228 -0
  82. endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
  83. endoreg_db/data/lab_value/hematology.yaml +184 -0
  84. endoreg_db/data/lab_value/hormones.yaml +59 -0
  85. endoreg_db/data/lab_value/lipids.yaml +53 -0
  86. endoreg_db/data/lab_value/misc.yaml +33 -0
  87. endoreg_db/data/lab_value/renal_function.yaml +12 -0
  88. endoreg_db/data/log_type/data.yaml +57 -0
  89. endoreg_db/data/lx_client_tag/base.yaml +54 -0
  90. endoreg_db/data/lx_client_type/base.yaml +30 -0
  91. endoreg_db/data/lx_permission/base.yaml +24 -0
  92. endoreg_db/data/lx_permission/endoreg.yaml +52 -0
  93. endoreg_db/data/material/material.yaml +91 -0
  94. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  95. endoreg_db/data/medication/tah.yaml +70 -0
  96. endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
  97. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  98. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  99. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  100. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  101. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  102. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  103. endoreg_db/data/names_first/first_names.yaml +51 -0
  104. endoreg_db/data/names_last/last_names.yaml +51 -0
  105. endoreg_db/data/network_device/data.yaml +59 -0
  106. endoreg_db/data/network_device_type/data.yaml +12 -0
  107. endoreg_db/data/organ/data.yaml +29 -0
  108. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  109. endoreg_db/data/pdf_type/data.yaml +29 -0
  110. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  111. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  112. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  113. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  114. endoreg_db/data/profession/data.yaml +70 -0
  115. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  116. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
  117. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -0
  118. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  119. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  120. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  121. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  122. endoreg_db/data/unit/concentration.yaml +92 -0
  123. endoreg_db/data/unit/data.yaml +17 -0
  124. endoreg_db/data/unit/length.yaml +31 -0
  125. endoreg_db/data/unit/misc.yaml +20 -0
  126. endoreg_db/data/unit/rate.yaml +6 -0
  127. endoreg_db/data/unit/time.yaml +13 -0
  128. endoreg_db/data/unit/volume.yaml +35 -0
  129. endoreg_db/data/unit/weight.yaml +38 -0
  130. endoreg_db/data/waste/data.yaml +12 -0
  131. endoreg_db/forms/__init__.py +5 -0
  132. endoreg_db/forms/examination_form.py +11 -0
  133. endoreg_db/forms/patient_finding_intervention_form.py +19 -0
  134. endoreg_db/forms/patient_form.py +26 -0
  135. endoreg_db/forms/questionnaires/__init__.py +1 -0
  136. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
  137. endoreg_db/forms/settings/__init__.py +8 -0
  138. endoreg_db/forms/unit.py +6 -0
  139. endoreg_db/management/__init__.py +0 -0
  140. endoreg_db/management/commands/__init__.py +0 -0
  141. endoreg_db/management/commands/_load_model_template.py +41 -0
  142. endoreg_db/management/commands/delete_all.py +18 -0
  143. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -0
  144. endoreg_db/management/commands/fix_auth_permission.py +20 -0
  145. endoreg_db/management/commands/load_active_model_data.py +45 -0
  146. endoreg_db/management/commands/load_ai_model_data.py +79 -0
  147. endoreg_db/management/commands/load_ai_model_label_data.py +59 -0
  148. endoreg_db/management/commands/load_base_db_data.py +178 -0
  149. endoreg_db/management/commands/load_center_data.py +43 -0
  150. endoreg_db/management/commands/load_contraindication_data.py +41 -0
  151. endoreg_db/management/commands/load_disease_classification_choices_data.py +41 -0
  152. endoreg_db/management/commands/load_disease_classification_data.py +41 -0
  153. endoreg_db/management/commands/load_disease_data.py +62 -0
  154. endoreg_db/management/commands/load_distribution_data.py +66 -0
  155. endoreg_db/management/commands/load_endoscope_data.py +68 -0
  156. endoreg_db/management/commands/load_event_data.py +41 -0
  157. endoreg_db/management/commands/load_examination_data.py +75 -0
  158. endoreg_db/management/commands/load_examination_indication_data.py +65 -0
  159. endoreg_db/management/commands/load_finding_data.py +171 -0
  160. endoreg_db/management/commands/load_g_play_data.py +113 -0
  161. endoreg_db/management/commands/load_gender_data.py +44 -0
  162. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +133 -0
  163. endoreg_db/management/commands/load_information_source.py +45 -0
  164. endoreg_db/management/commands/load_lab_value_data.py +50 -0
  165. endoreg_db/management/commands/load_logging_data.py +39 -0
  166. endoreg_db/management/commands/load_lx_data.py +64 -0
  167. endoreg_db/management/commands/load_medication_data.py +103 -0
  168. endoreg_db/management/commands/load_medication_indication_data.py +63 -0
  169. endoreg_db/management/commands/load_medication_indication_type_data.py +41 -0
  170. endoreg_db/management/commands/load_medication_intake_time_data.py +41 -0
  171. endoreg_db/management/commands/load_medication_schedule_data.py +55 -0
  172. endoreg_db/management/commands/load_name_data.py +37 -0
  173. endoreg_db/management/commands/load_network_data.py +57 -0
  174. endoreg_db/management/commands/load_organ_data.py +43 -0
  175. endoreg_db/management/commands/load_pdf_type_data.py +61 -0
  176. endoreg_db/management/commands/load_profession_data.py +44 -0
  177. endoreg_db/management/commands/load_report_reader_flag_data.py +46 -0
  178. endoreg_db/management/commands/load_unit_data.py +46 -0
  179. endoreg_db/management/commands/load_user_groups.py +28 -0
  180. endoreg_db/management/commands/register_ai_model.py +64 -0
  181. endoreg_db/management/commands/reset_celery_schedule.py +9 -0
  182. endoreg_db/migrations/0001_initial.py +2045 -0
  183. endoreg_db/migrations/0002_alter_frame_image_alter_rawframe_image.py +23 -0
  184. endoreg_db/migrations/0003_alter_frame_image_alter_rawframe_image.py +23 -0
  185. endoreg_db/migrations/0004_alter_rawvideofile_file_alter_video_file.py +25 -0
  186. endoreg_db/migrations/0005_rawvideofile_frame_count_and_more.py +33 -0
  187. endoreg_db/migrations/0006_frame_extracted_rawframe_extracted.py +23 -0
  188. endoreg_db/migrations/0007_rename_pseudo_patient_video_patient_and_more.py +24 -0
  189. endoreg_db/migrations/0008_remove_reportfile_patient_examination_and_more.py +48 -0
  190. endoreg_db/migrations/__init__.py +0 -0
  191. endoreg_db/models/__init__.py +376 -0
  192. endoreg_db/models/ai_model/__init__.py +4 -0
  193. endoreg_db/models/ai_model/active_model.py +9 -0
  194. endoreg_db/models/ai_model/ai_model.py +103 -0
  195. endoreg_db/models/ai_model/lightning/__init__.py +3 -0
  196. endoreg_db/models/ai_model/lightning/inference_dataset.py +53 -0
  197. endoreg_db/models/ai_model/lightning/multilabel_classification_net.py +155 -0
  198. endoreg_db/models/ai_model/lightning/postprocess.py +53 -0
  199. endoreg_db/models/ai_model/lightning/predict.py +172 -0
  200. endoreg_db/models/ai_model/lightning/prediction_visualizer.py +55 -0
  201. endoreg_db/models/ai_model/lightning/preprocess.py +68 -0
  202. endoreg_db/models/ai_model/lightning/run_visualizer.py +21 -0
  203. endoreg_db/models/ai_model/model_meta.py +250 -0
  204. endoreg_db/models/ai_model/model_type.py +36 -0
  205. endoreg_db/models/ai_model/utils.py +8 -0
  206. endoreg_db/models/annotation/__init__.py +32 -0
  207. endoreg_db/models/annotation/anonymized_image_annotation.py +115 -0
  208. endoreg_db/models/annotation/binary_classification_annotation_task.py +117 -0
  209. endoreg_db/models/annotation/image_classification.py +86 -0
  210. endoreg_db/models/annotation/video_segmentation_annotation.py +52 -0
  211. endoreg_db/models/annotation/video_segmentation_labelset.py +20 -0
  212. endoreg_db/models/case/__init__.py +1 -0
  213. endoreg_db/models/case/case.py +34 -0
  214. endoreg_db/models/case_template/__init__.py +15 -0
  215. endoreg_db/models/case_template/case_template.py +125 -0
  216. endoreg_db/models/case_template/case_template_rule.py +276 -0
  217. endoreg_db/models/case_template/case_template_rule_value.py +88 -0
  218. endoreg_db/models/case_template/case_template_type.py +28 -0
  219. endoreg_db/models/center/__init__.py +11 -0
  220. endoreg_db/models/center/center.py +51 -0
  221. endoreg_db/models/center/center_product.py +33 -0
  222. endoreg_db/models/center/center_resource.py +33 -0
  223. endoreg_db/models/center/center_waste.py +16 -0
  224. endoreg_db/models/contraindication/__init__.py +21 -0
  225. endoreg_db/models/data_file/__init__.py +39 -0
  226. endoreg_db/models/data_file/base_classes/__init__.py +7 -0
  227. endoreg_db/models/data_file/base_classes/abstract_frame.py +100 -0
  228. endoreg_db/models/data_file/base_classes/abstract_pdf.py +136 -0
  229. endoreg_db/models/data_file/base_classes/abstract_video.py +807 -0
  230. endoreg_db/models/data_file/base_classes/frame_helpers.py +17 -0
  231. endoreg_db/models/data_file/base_classes/prepare_bulk_frames.py +19 -0
  232. endoreg_db/models/data_file/base_classes/utils.py +80 -0
  233. endoreg_db/models/data_file/frame.py +29 -0
  234. endoreg_db/models/data_file/import_classes/__init__.py +18 -0
  235. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +35 -0
  236. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -0
  237. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -0
  238. endoreg_db/models/data_file/import_classes/raw_pdf.py +260 -0
  239. endoreg_db/models/data_file/import_classes/raw_video.py +288 -0
  240. endoreg_db/models/data_file/metadata/__init__.py +13 -0
  241. endoreg_db/models/data_file/metadata/pdf_meta.py +74 -0
  242. endoreg_db/models/data_file/metadata/sensitive_meta.py +290 -0
  243. endoreg_db/models/data_file/metadata/video_meta.py +199 -0
  244. endoreg_db/models/data_file/report_file.py +56 -0
  245. endoreg_db/models/data_file/video/__init__.py +11 -0
  246. endoreg_db/models/data_file/video/import_meta.py +25 -0
  247. endoreg_db/models/data_file/video/video.py +196 -0
  248. endoreg_db/models/data_file/video_segment.py +214 -0
  249. endoreg_db/models/disease.py +79 -0
  250. endoreg_db/models/emission/__init__.py +5 -0
  251. endoreg_db/models/emission/emission_factor.py +85 -0
  252. endoreg_db/models/event.py +73 -0
  253. endoreg_db/models/examination/__init__.py +9 -0
  254. endoreg_db/models/examination/examination.py +67 -0
  255. endoreg_db/models/examination/examination_indication.py +170 -0
  256. endoreg_db/models/examination/examination_time.py +53 -0
  257. endoreg_db/models/examination/examination_time_type.py +48 -0
  258. endoreg_db/models/examination/examination_type.py +40 -0
  259. endoreg_db/models/finding/__init__.py +11 -0
  260. endoreg_db/models/finding/finding.py +75 -0
  261. endoreg_db/models/finding/finding_intervention.py +60 -0
  262. endoreg_db/models/finding/finding_location_classification.py +94 -0
  263. endoreg_db/models/finding/finding_morphology_classification.py +89 -0
  264. endoreg_db/models/finding/finding_type.py +22 -0
  265. endoreg_db/models/hardware/__init__.py +2 -0
  266. endoreg_db/models/hardware/endoscope.py +60 -0
  267. endoreg_db/models/hardware/endoscopy_processor.py +155 -0
  268. endoreg_db/models/information_source.py +29 -0
  269. endoreg_db/models/label/__init__.py +1 -0
  270. endoreg_db/models/label/label.py +112 -0
  271. endoreg_db/models/laboratory/__init__.py +1 -0
  272. endoreg_db/models/laboratory/lab_value.py +111 -0
  273. endoreg_db/models/logging/__init__.py +11 -0
  274. endoreg_db/models/logging/agl_service.py +19 -0
  275. endoreg_db/models/logging/base.py +22 -0
  276. endoreg_db/models/logging/log_type.py +23 -0
  277. endoreg_db/models/logging/network_device.py +27 -0
  278. endoreg_db/models/lx/__init__.py +4 -0
  279. endoreg_db/models/lx/client.py +57 -0
  280. endoreg_db/models/lx/identity.py +34 -0
  281. endoreg_db/models/lx/permission.py +18 -0
  282. endoreg_db/models/lx/user.py +16 -0
  283. endoreg_db/models/medication/__init__.py +19 -0
  284. endoreg_db/models/medication/medication.py +33 -0
  285. endoreg_db/models/medication/medication_indication.py +50 -0
  286. endoreg_db/models/medication/medication_indication_type.py +34 -0
  287. endoreg_db/models/medication/medication_intake_time.py +26 -0
  288. endoreg_db/models/medication/medication_schedule.py +37 -0
  289. endoreg_db/models/network/__init__.py +9 -0
  290. endoreg_db/models/network/agl_service.py +38 -0
  291. endoreg_db/models/network/network_device.py +58 -0
  292. endoreg_db/models/network/network_device_type.py +23 -0
  293. endoreg_db/models/organ/__init__.py +38 -0
  294. endoreg_db/models/other/__init__.py +23 -0
  295. endoreg_db/models/other/distribution/__init__.py +44 -0
  296. endoreg_db/models/other/distribution/base_value_distribution.py +20 -0
  297. endoreg_db/models/other/distribution/date_value_distribution.py +91 -0
  298. endoreg_db/models/other/distribution/multiple_categorical_value_distribution.py +32 -0
  299. endoreg_db/models/other/distribution/numeric_value_distribution.py +97 -0
  300. endoreg_db/models/other/distribution/single_categorical_value_distribution.py +22 -0
  301. endoreg_db/models/other/distribution.py +5 -0
  302. endoreg_db/models/other/material.py +20 -0
  303. endoreg_db/models/other/resource.py +18 -0
  304. endoreg_db/models/other/transport_route.py +22 -0
  305. endoreg_db/models/other/waste.py +20 -0
  306. endoreg_db/models/patient/__init__.py +24 -0
  307. endoreg_db/models/patient/patient_examination.py +182 -0
  308. endoreg_db/models/patient/patient_finding.py +143 -0
  309. endoreg_db/models/patient/patient_finding_intervention.py +26 -0
  310. endoreg_db/models/patient/patient_finding_location.py +120 -0
  311. endoreg_db/models/patient/patient_finding_morphology.py +166 -0
  312. endoreg_db/models/permissions/__init__.py +44 -0
  313. endoreg_db/models/persons/__init__.py +34 -0
  314. endoreg_db/models/persons/examiner/__init__.py +2 -0
  315. endoreg_db/models/persons/examiner/examiner.py +60 -0
  316. endoreg_db/models/persons/examiner/examiner_type.py +2 -0
  317. endoreg_db/models/persons/first_name.py +18 -0
  318. endoreg_db/models/persons/gender.py +22 -0
  319. endoreg_db/models/persons/last_name.py +20 -0
  320. endoreg_db/models/persons/patient/__init__.py +8 -0
  321. endoreg_db/models/persons/patient/patient.py +389 -0
  322. endoreg_db/models/persons/patient/patient_disease.py +22 -0
  323. endoreg_db/models/persons/patient/patient_event.py +52 -0
  324. endoreg_db/models/persons/patient/patient_examination_indication.py +32 -0
  325. endoreg_db/models/persons/patient/patient_lab_sample.py +108 -0
  326. endoreg_db/models/persons/patient/patient_lab_value.py +197 -0
  327. endoreg_db/models/persons/patient/patient_medication.py +59 -0
  328. endoreg_db/models/persons/patient/patient_medication_schedule.py +88 -0
  329. endoreg_db/models/persons/person.py +31 -0
  330. endoreg_db/models/persons/portal_user_information.py +27 -0
  331. endoreg_db/models/prediction/__init__.py +8 -0
  332. endoreg_db/models/prediction/image_classification.py +51 -0
  333. endoreg_db/models/prediction/video_prediction_meta.py +306 -0
  334. endoreg_db/models/product/__init__.py +14 -0
  335. endoreg_db/models/product/product.py +110 -0
  336. endoreg_db/models/product/product_group.py +27 -0
  337. endoreg_db/models/product/product_material.py +28 -0
  338. endoreg_db/models/product/product_weight.py +38 -0
  339. endoreg_db/models/product/reference_product.py +115 -0
  340. endoreg_db/models/questionnaires/__init__.py +114 -0
  341. endoreg_db/models/quiz/__init__.py +9 -0
  342. endoreg_db/models/quiz/quiz_answer.py +41 -0
  343. endoreg_db/models/quiz/quiz_question.py +54 -0
  344. endoreg_db/models/report_reader/__init__.py +7 -0
  345. endoreg_db/models/report_reader/report_reader_config.py +53 -0
  346. endoreg_db/models/report_reader/report_reader_flag.py +20 -0
  347. endoreg_db/models/rules/__init__.py +5 -0
  348. endoreg_db/models/rules/rule.py +24 -0
  349. endoreg_db/models/rules/rule_applicator.py +224 -0
  350. endoreg_db/models/rules/rule_attribute_dtype.py +19 -0
  351. endoreg_db/models/rules/rule_type.py +22 -0
  352. endoreg_db/models/rules/ruleset.py +19 -0
  353. endoreg_db/models/unit.py +22 -0
  354. endoreg_db/queries/__init__.py +5 -0
  355. endoreg_db/queries/annotations/__init__.py +3 -0
  356. endoreg_db/queries/annotations/legacy.py +158 -0
  357. endoreg_db/queries/get/__init__.py +6 -0
  358. endoreg_db/queries/get/annotation.py +0 -0
  359. endoreg_db/queries/get/center.py +42 -0
  360. endoreg_db/queries/get/model.py +13 -0
  361. endoreg_db/queries/get/patient.py +14 -0
  362. endoreg_db/queries/get/patient_examination.py +20 -0
  363. endoreg_db/queries/get/prediction.py +0 -0
  364. endoreg_db/queries/get/report_file.py +33 -0
  365. endoreg_db/queries/get/video.py +31 -0
  366. endoreg_db/queries/get/video_import_meta.py +0 -0
  367. endoreg_db/queries/get/video_prediction_meta.py +0 -0
  368. endoreg_db/queries/sanity/__init_.py +0 -0
  369. endoreg_db/serializers/__init__.py +10 -0
  370. endoreg_db/serializers/ai_model.py +19 -0
  371. endoreg_db/serializers/annotation.py +14 -0
  372. endoreg_db/serializers/center.py +11 -0
  373. endoreg_db/serializers/examination.py +33 -0
  374. endoreg_db/serializers/frame.py +9 -0
  375. endoreg_db/serializers/hardware.py +21 -0
  376. endoreg_db/serializers/label.py +22 -0
  377. endoreg_db/serializers/patient.py +33 -0
  378. endoreg_db/serializers/prediction.py +10 -0
  379. endoreg_db/serializers/raw_video_meta_validation.py +13 -0
  380. endoreg_db/serializers/report_file.py +7 -0
  381. endoreg_db/serializers/video.py +20 -0
  382. endoreg_db/serializers/video_segmentation.py +492 -0
  383. endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
  384. endoreg_db/templates/admin/start_examination.html +12 -0
  385. endoreg_db/templates/timeline.html +176 -0
  386. endoreg_db/utils/__init__.py +36 -0
  387. endoreg_db/utils/cropping.py +29 -0
  388. endoreg_db/utils/dataloader.py +118 -0
  389. endoreg_db/utils/dates.py +39 -0
  390. endoreg_db/utils/file_operations.py +30 -0
  391. endoreg_db/utils/hashs.py +152 -0
  392. endoreg_db/utils/legacy_ocr.py +201 -0
  393. endoreg_db/utils/names.py +74 -0
  394. endoreg_db/utils/ocr.py +190 -0
  395. endoreg_db/utils/parse_and_generate_yaml.py +46 -0
  396. endoreg_db/utils/pydantic_models/__init__.py +6 -0
  397. endoreg_db/utils/pydantic_models/db_config.py +57 -0
  398. endoreg_db/utils/uuid.py +4 -0
  399. endoreg_db/utils/validate_endo_roi.py +19 -0
  400. endoreg_db/utils/validate_subcategory_dict.py +91 -0
  401. endoreg_db/utils/video/__init__.py +13 -0
  402. endoreg_db/utils/video/extract_frames.py +121 -0
  403. endoreg_db/utils/video/transcode_videofile.py +111 -0
  404. endoreg_db/views/__init__.py +2 -0
  405. endoreg_db/views/csrf.py +7 -0
  406. endoreg_db/views/patient_views.py +90 -0
  407. endoreg_db/views/raw_video_meta_validation_views.py +38 -0
  408. endoreg_db/views/report_views.py +96 -0
  409. endoreg_db/views/video_segmentation_views.py +149 -0
  410. endoreg_db/views/views_for_timeline.py +46 -0
  411. {endoreg_db-0.6.0.dist-info → endoreg_db-0.6.1.dist-info}/METADATA +4 -4
  412. endoreg_db-0.6.1.dist-info/RECORD +420 -0
  413. {endoreg_db-0.6.0.dist-info → endoreg_db-0.6.1.dist-info}/WHEEL +1 -2
  414. endoreg_db-0.6.0.dist-info/RECORD +0 -11
  415. endoreg_db-0.6.0.dist-info/top_level.txt +0 -1
  416. {endoreg_db-0.6.0.dist-info → endoreg_db-0.6.1.dist-info/licenses}/LICENSE +0 -0
endoreg_db/data/pdf_type/data.yaml ADDED
@@ -0,0 +1,29 @@
1
+
2
+ - model: endoreg_db.pdf_type
3
+ fields:
4
+ name: "ukw-endoscopy-examination-report-generic"
5
+ patient_info_line: "ukw-examination-generic-patient-info-line"
6
+ endoscope_info_line: "ukw-examination-generic-endoscope-info-line"
7
+ examiner_info_line: "ukw-examination-generic-examiner-info-line"
8
+ cut_off_above_lines: [
9
+ "ukw-examination-generic-anamnese-info-line",
10
+ "ukw-examination-generic-endoscope-info-line",
11
+ "ukw-examination-generic-examiner-info-line",
12
+ ]
13
+ cut_off_below_lines: [
14
+ "ukw-examination-generic-cut-off-below-line-01"
15
+ ]
16
+
17
+
18
+ - model: endoreg_db.pdf_type
19
+ fields:
20
+ name: "ukw-endoscopy-histology-report-generic"
21
+ patient_info_line: "ukw-histology-generic-patient-info-line"
22
+ endoscope_info_line: "ukw-histology-generic-endoscope-info-line"
23
+ examiner_info_line: "ukw-histology-generic-examiner-info-line"
24
+ cut_off_above_lines: [
25
+ "ukw-histology-generic-patient-info-line"
26
+ ]
27
+ cut_off_below_lines: [
28
+ "ukw-endoscopy-histology-cut-off-below-line-flag-01"
29
+ ]
endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml ADDED
@@ -0,0 +1,66 @@
1
+ - fields:
2
+ name: extraction_balloon_escort_2
3
+ name_de: Escort II Extraction Balloon
4
+ product_group: Balloon
5
+ transport_route: generic_overseas
6
+ model: endoreg_db.Product
7
+ - fields:
8
+ name: esophageal_dilator
9
+ name_de: Esophageal Dilator
10
+ product_group: Bougie
11
+ transport_route: generic_europe
12
+ model: endoreg_db.Product
13
+ - fields:
14
+ name: visiglide_2
15
+ name_de: VisiGlide 2
16
+ product_group: Wire
17
+ transport_route: generic_overseas
18
+ model: endoreg_db.Product
19
+ - fields:
20
+ name: peg_freka_15_ch
21
+ name_de: Freka PEG CH/FR15
22
+ product_group: PEG
23
+ transport_route: generic_europe
24
+ model: endoreg_db.Product
25
+ - fields:
26
+ name: biopsy_grasper_hot_radial_jaw_4
27
+ name_de: Biopsiezange 4 Hot Radial Jaw
28
+ product_group: Instrument
29
+ transport_route: generic_overseas
30
+ model: endoreg_db.Product
31
+ - fields:
32
+ name: nitinol_stent_aix_oel
33
+ name_de: Nitinol Stent, aix stent OEL
34
+ product_group: Metal-Stent
35
+ transport_route: generic_europe
36
+ model: endoreg_db.Product
37
+ - fields:
38
+ name: biliary_stent_cotton_leung_sof_flex
39
+ name_de: Cotton-Leung Sof-Flex Biliary Stent
40
+ product_group: Plastic-Stent
41
+ transport_route: generic_overseas
42
+ model: endoreg_db.Product
43
+ - fields:
44
+ name: bite_protector
45
+ name_de: "Einmal Bei\xDFring"
46
+ product_group: Plastic
47
+ transport_route: generic_europe
48
+ model: endoreg_db.Product
49
+ - fields:
50
+ name: pressure_syringe_60_ml
51
+ name_de: Druckspritze 60ml System Alliance II
52
+ product_group: Plastic-Large
53
+ transport_route: generic_overseas
54
+ model: endoreg_db.Product
55
+ - fields:
56
+ name: foliodress_gown_standard
57
+ name_de: Foliodress gown Standard
58
+ product_group: Coat
59
+ transport_route: generic_europe
60
+ model: endoreg_db.Product
61
+ - fields:
62
+ name: absorbant_pad
63
+ name_de: Unterlage
64
+ product_group: Absorbant-Pad
65
+ transport_route: generic_overseas
66
+ model: endoreg_db.Product
endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml ADDED
@@ -0,0 +1,33 @@
1
+ - fields:
2
+ name: Balloon
3
+ model: endoreg_db.ProductGroup
4
+ - fields:
5
+ name: Bougie
6
+ model: endoreg_db.ProductGroup
7
+ - fields:
8
+ name: Wire
9
+ model: endoreg_db.ProductGroup
10
+ - fields:
11
+ name: PEG
12
+ model: endoreg_db.ProductGroup
13
+ - fields:
14
+ name: Instrument
15
+ model: endoreg_db.ProductGroup
16
+ - fields:
17
+ name: Metal-Stent
18
+ model: endoreg_db.ProductGroup
19
+ - fields:
20
+ name: Plastic-Stent
21
+ model: endoreg_db.ProductGroup
22
+ - fields:
23
+ name: Plastic
24
+ model: endoreg_db.ProductGroup
25
+ - fields:
26
+ name: Plastic-Large
27
+ model: endoreg_db.ProductGroup
28
+ - fields:
29
+ name: Coat
30
+ model: endoreg_db.ProductGroup
31
+ - fields:
32
+ name: Absorbant-Pad
33
+ model: endoreg_db.ProductGroup
endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml ADDED
@@ -0,0 +1,308 @@
1
+ - fields:
2
+ component: product
3
+ material: plastic
4
+ product: extraction_balloon_escort_2
5
+ quantity: 0.042
6
+ unit: kilogram
7
+ model: endoreg_db.ProductMaterial
8
+ - fields:
9
+ component: package
10
+ material: plastic
11
+ product: extraction_balloon_escort_2
12
+ quantity: 0.0225
13
+ unit: kilogram
14
+ model: endoreg_db.ProductMaterial
15
+ - fields:
16
+ component: package
17
+ material: paper
18
+ product: extraction_balloon_escort_2
19
+ quantity: 0.0095
20
+ unit: kilogram
21
+ model: endoreg_db.ProductMaterial
22
+ - fields:
23
+ component: product
24
+ material: silicone
25
+ product: esophageal_dilator
26
+ quantity: 0.119
27
+ unit: kilogram
28
+ model: endoreg_db.ProductMaterial
29
+ - fields:
30
+ component: product
31
+ material: steel
32
+ product: esophageal_dilator
33
+ quantity: 0.001
34
+ unit: kilogram
35
+ model: endoreg_db.ProductMaterial
36
+ - fields:
37
+ component: package
38
+ material: paper_coated
39
+ product: esophageal_dilator
40
+ quantity: 0.007
41
+ unit: kilogram
42
+ model: endoreg_db.ProductMaterial
43
+ - fields:
44
+ component: package
45
+ material: plastic
46
+ product: esophageal_dilator
47
+ quantity: 0.007
48
+ unit: kilogram
49
+ model: endoreg_db.ProductMaterial
50
+ - fields:
51
+ component: product
52
+ material: metal
53
+ product: visiglide_2
54
+ quantity: 0.045
55
+ unit: kilogram
56
+ model: endoreg_db.ProductMaterial
57
+ - fields:
58
+ component: package
59
+ material: cardboard
60
+ product: visiglide_2
61
+ quantity: 0.108
62
+ unit: kilogram
63
+ model: endoreg_db.ProductMaterial
64
+ - fields:
65
+ component: package
66
+ material: paper
67
+ product: visiglide_2
68
+ quantity: 0.015
69
+ unit: kilogram
70
+ model: endoreg_db.ProductMaterial
71
+ - fields:
72
+ component: package
73
+ material: paper_coated
74
+ product: visiglide_2
75
+ quantity: 0.013
76
+ unit: kilogram
77
+ model: endoreg_db.ProductMaterial
78
+ - fields:
79
+ component: package
80
+ material: plastic
81
+ product: visiglide_2
82
+ quantity: 0.013
83
+ unit: kilogram
84
+ model: endoreg_db.ProductMaterial
85
+ - fields:
86
+ component: product
87
+ material: metal
88
+ product: peg_freka_15_ch
89
+ quantity: 0.0074
90
+ unit: kilogram
91
+ model: endoreg_db.ProductMaterial
92
+ - fields:
93
+ component: product
94
+ material: plastic
95
+ product: peg_freka_15_ch
96
+ quantity: 0.0222
97
+ unit: kilogram
98
+ model: endoreg_db.ProductMaterial
99
+ - fields:
100
+ component: product
101
+ material: silicone
102
+ product: peg_freka_15_ch
103
+ quantity: 0.0074
104
+ unit: kilogram
105
+ model: endoreg_db.ProductMaterial
106
+ - fields:
107
+ component: package
108
+ material: cardboard
109
+ product: peg_freka_15_ch
110
+ quantity: 0.072
111
+ unit: kilogram
112
+ model: endoreg_db.ProductMaterial
113
+ - fields:
114
+ component: package
115
+ material: paper
116
+ product: peg_freka_15_ch
117
+ quantity: 0.086
118
+ unit: kilogram
119
+ model: endoreg_db.ProductMaterial
120
+ - fields:
121
+ component: package
122
+ material: plastic
123
+ product: peg_freka_15_ch
124
+ quantity: 0.033
125
+ unit: kilogram
126
+ model: endoreg_db.ProductMaterial
127
+ - fields:
128
+ component: product
129
+ material: metal
130
+ product: biopsy_grasper_hot_radial_jaw_4
131
+ quantity: 0.0295
132
+ unit: kilogram
133
+ model: endoreg_db.ProductMaterial
134
+ - fields:
135
+ component: product
136
+ material: plastic
137
+ product: biopsy_grasper_hot_radial_jaw_4
138
+ quantity: 0.0295
139
+ unit: kilogram
140
+ model: endoreg_db.ProductMaterial
141
+ - fields:
142
+ component: package
143
+ material: paper
144
+ product: biopsy_grasper_hot_radial_jaw_4
145
+ quantity: 0.0085
146
+ unit: kilogram
147
+ model: endoreg_db.ProductMaterial
148
+ - fields:
149
+ component: package
150
+ material: plastic
151
+ product: biopsy_grasper_hot_radial_jaw_4
152
+ quantity: 0.0085
153
+ unit: kilogram
154
+ model: endoreg_db.ProductMaterial
155
+ - fields:
156
+ component: product
157
+ material: nickel
158
+ product: nitinol_stent_aix_oel
159
+ quantity: 0.015
160
+ unit: kilogram
161
+ model: endoreg_db.ProductMaterial
162
+ - fields:
163
+ component: product
164
+ material: plastic
165
+ product: nitinol_stent_aix_oel
166
+ quantity: 0.024
167
+ unit: kilogram
168
+ model: endoreg_db.ProductMaterial
169
+ - fields:
170
+ component: product
171
+ material: silicone
172
+ product: nitinol_stent_aix_oel
173
+ quantity: 0.003
174
+ unit: kilogram
175
+ model: endoreg_db.ProductMaterial
176
+ - fields:
177
+ component: product
178
+ material: tantal
179
+ product: nitinol_stent_aix_oel
180
+ quantity: 0.003
181
+ unit: kilogram
182
+ model: endoreg_db.ProductMaterial
183
+ - fields:
184
+ component: product
185
+ material: titan
186
+ product: nitinol_stent_aix_oel
187
+ quantity: 0.015
188
+ unit: kilogram
189
+ model: endoreg_db.ProductMaterial
190
+ - fields:
191
+ component: package
192
+ material: paper
193
+ product: nitinol_stent_aix_oel
194
+ quantity: 0.106
195
+ unit: kilogram
196
+ model: endoreg_db.ProductMaterial
197
+ - fields:
198
+ component: package
199
+ material: plastic
200
+ product: nitinol_stent_aix_oel
201
+ quantity: 0.03
202
+ unit: kilogram
203
+ model: endoreg_db.ProductMaterial
204
+ - fields:
205
+ component: product
206
+ material: gold
207
+ product: biliary_stent_cotton_leung_sof_flex
208
+ quantity: 0.007
209
+ unit: kilogram
210
+ model: endoreg_db.ProductMaterial
211
+ - fields:
212
+ component: package
213
+ material: paper
214
+ product: biliary_stent_cotton_leung_sof_flex
215
+ quantity: 0.014
216
+ unit: kilogram
217
+ model: endoreg_db.ProductMaterial
218
+ - fields:
219
+ component: package
220
+ material: plastic
221
+ product: biliary_stent_cotton_leung_sof_flex
222
+ quantity: 0.004
223
+ unit: kilogram
224
+ model: endoreg_db.ProductMaterial
225
+ - fields:
226
+ component: product
227
+ material: plastic
228
+ product: bite_protector
229
+ quantity: 0.006
230
+ unit: kilogram
231
+ model: endoreg_db.ProductMaterial
232
+ - fields:
233
+ component: product
234
+ material: textile
235
+ product: bite_protector
236
+ quantity: 0.005
237
+ unit: kilogram
238
+ model: endoreg_db.ProductMaterial
239
+ - fields:
240
+ component: package
241
+ material: paper
242
+ product: bite_protector
243
+ quantity: 0.001
244
+ unit: kilogram
245
+ model: endoreg_db.ProductMaterial
246
+ - fields:
247
+ component: package
248
+ material: plastic
249
+ product: bite_protector
250
+ quantity: 0.001
251
+ unit: kilogram
252
+ model: endoreg_db.ProductMaterial
253
+ - fields:
254
+ component: product
255
+ material: plastic
256
+ product: pressure_syringe_60_ml
257
+ quantity: 0.07
258
+ unit: kilogram
259
+ model: endoreg_db.ProductMaterial
260
+ - fields:
261
+ component: product
262
+ material: steel
263
+ product: pressure_syringe_60_ml
264
+ quantity: 0.03
265
+ unit: kilogram
266
+ model: endoreg_db.ProductMaterial
267
+ - fields:
268
+ component: package
269
+ material: paper
270
+ product: pressure_syringe_60_ml
271
+ quantity: 0.004
272
+ unit: kilogram
273
+ model: endoreg_db.ProductMaterial
274
+ - fields:
275
+ component: package
276
+ material: plastic
277
+ product: pressure_syringe_60_ml
278
+ quantity: 0.039
279
+ unit: kilogram
280
+ model: endoreg_db.ProductMaterial
281
+ - fields:
282
+ component: product
283
+ material: plastic
284
+ product: foliodress_gown_standard
285
+ quantity: 0.036
286
+ unit: kilogram
287
+ model: endoreg_db.ProductMaterial
288
+ - fields:
289
+ component: package
290
+ material: plastic
291
+ product: foliodress_gown_standard
292
+ quantity: 0.001
293
+ unit: kilogram
294
+ model: endoreg_db.ProductMaterial
295
+ - fields:
296
+ component: product
297
+ material: plastic_coated
298
+ product: absorbant_pad
299
+ quantity: 0.057
300
+ unit: kilogram
301
+ model: endoreg_db.ProductMaterial
302
+ - fields:
303
+ component: package
304
+ material: plastic
305
+ product: absorbant_pad
306
+ quantity: 0.001
307
+ unit: kilogram
308
+ model: endoreg_db.ProductMaterial
endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml ADDED
@@ -0,0 +1,88 @@
1
+ - fields:
2
+ manufacturer: 0.1862
3
+ measured: 0.077
4
+ name: weight_extraction_balloon_escort_2
5
+ product: extraction_balloon_escort_2
6
+ unit: kilogram
7
+ verified: 0.074
8
+ model: endoreg_db.ProductWeight
9
+ - fields:
10
+ manufacturer: .nan
11
+ measured: .nan
12
+ name: weight_esophageal_dilator
13
+ product: esophageal_dilator
14
+ unit: kilogram
15
+ verified: 0.134
16
+ model: endoreg_db.ProductWeight
17
+ - fields:
18
+ manufacturer: 0.27
19
+ measured: 0.19
20
+ name: weight_visiglide_2
21
+ product: visiglide_2
22
+ unit: kilogram
23
+ verified: 0.194
24
+ model: endoreg_db.ProductWeight
25
+ - fields:
26
+ manufacturer: 0.037
27
+ measured: 0.234
28
+ name: weight_peg_freka_15_ch
29
+ product: peg_freka_15_ch
30
+ unit: kilogram
31
+ verified: 0.228
32
+ model: endoreg_db.ProductWeight
33
+ - fields:
34
+ manufacturer: 0.15
35
+ measured: 0.067
36
+ name: weight_biopsy_grasper_hot_radial_jaw_4
37
+ product: biopsy_grasper_hot_radial_jaw_4
38
+ unit: kilogram
39
+ verified: 0.076
40
+ model: endoreg_db.ProductWeight
41
+ - fields:
42
+ manufacturer: .nan
43
+ measured: .nan
44
+ name: weight_nitinol_stent_aix_oel
45
+ product: nitinol_stent_aix_oel
46
+ unit: kilogram
47
+ verified: 0.413
48
+ model: endoreg_db.ProductWeight
49
+ - fields:
50
+ manufacturer: .nan
51
+ measured: 0.061
52
+ name: weight_biliary_stent_cotton_leung_sof_flex
53
+ product: biliary_stent_cotton_leung_sof_flex
54
+ unit: kilogram
55
+ verified: 0.058
56
+ model: endoreg_db.ProductWeight
57
+ - fields:
58
+ manufacturer: .nan
59
+ measured: 0.014
60
+ name: weight_bite_protector
61
+ product: bite_protector
62
+ unit: kilogram
63
+ verified: 0.013
64
+ model: endoreg_db.ProductWeight
65
+ - fields:
66
+ manufacturer: 0.25
67
+ measured: 0.146
68
+ name: weight_pressure_syringe_60_ml
69
+ product: pressure_syringe_60_ml
70
+ unit: kilogram
71
+ verified: 0.143
72
+ model: endoreg_db.ProductWeight
73
+ - fields:
74
+ manufacturer: .nan
75
+ measured: 0.094
76
+ name: weight_foliodress_gown_standard
77
+ product: foliodress_gown_standard
78
+ unit: kilogram
79
+ verified: 0.036
80
+ model: endoreg_db.ProductWeight
81
+ - fields:
82
+ manufacturer: .nan
83
+ measured: 0.092
84
+ name: weight_absorbant_pad
85
+ product: absorbant_pad
86
+ unit: kilogram
87
+ verified: 0.057
88
+ model: endoreg_db.ProductWeight
endoreg_db/data/profession/data.yaml ADDED
@@ -0,0 +1,70 @@
1
+ - model: endoreg_db.Profession
2
+ fields:
3
+ name: "nurse"
4
+ name_de: "Pflegekraft"
5
+ name_en: "Nurse"
6
+ description: "Not further specified nurse"
7
+
8
+ # endoscopy nurse
9
+ - model: endoreg_db.Profession
10
+ fields:
11
+ name: "endoscopy-nurse"
12
+ name_de: "Pflegekraft (Endoskopie)"
13
+ name_en: "Endoscopy nurse"
14
+ description: "Endoscopy nurse"
15
+
16
+ - model: endoreg_db.Profession
17
+ fields:
18
+ name: "physician"
19
+ name_de: "Arzt"
20
+ name_en: "Physician"
21
+ description: "Not further specified doctor"
22
+
23
+ # Physician in training (gastroenterology)
24
+ - model: endoreg_db.Profession
25
+ fields:
26
+ name: "physician-in-training-gastroenterology"
27
+ name_de: "Arzt in Weiterbildung Gastroenterologie"
28
+ name_en: "Physician in training (gastroenterology)"
29
+ description: "Physician in training (gastroenterology)"
30
+
31
+ # Physician in training (internal medicine)
32
+ - model: endoreg_db.Profession
33
+ fields:
34
+ name: "physician-in-training-internal-medicine"
35
+ name_de: "Arzt in Weiterbildung Innere Medizin"
36
+ name_en: "Physician in training (internal medicine)"
37
+ description: "Physician in training (internal medicine)"
38
+
39
+ # Physician in training (general surgery)
40
+ - model: endoreg_db.Profession
41
+ fields:
42
+ name: "physician-in-training-general-surgery"
43
+ name_de: "Arzt in Weiterbildung Allgemeinchirurgie"
44
+ name_en: "Physician in training (general surgery)"
45
+ description: "Physician in training (general surgery)"
46
+
47
+ # Physician (Internal Medicine)
48
+ - model: endoreg_db.Profession
49
+ fields:
50
+ name: "physician-internal-medicine"
51
+ name_de: "Arzt Innere Medizin"
52
+ name_en: "Physician (Internal Medicine)"
53
+ description: "Physician (Internal Medicine)"
54
+
55
+ # Physician (Gastroenterology)
56
+ - model: endoreg_db.Profession
57
+ fields:
58
+ name: "physician-gastroenterology"
59
+ name_de: "Arzt Gastroenterologie"
60
+ name_en: "Physician (Gastroenterology)"
61
+ description: "Physician (Gastroenterology)"
62
+
63
+ # Physician (General Surgery)
64
+ - model: endoreg_db.Profession
65
+ fields:
66
+ name: "physician-general-surgery"
67
+ name_de: "Arzt Allgemeinchirurgie"
68
+ name_en: "Physician (General Surgery)"
69
+ description: "Physician (General Surgery)"
70
+
endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml ADDED
@@ -0,0 +1,55 @@
1
+ - fields:
2
+ name: reference_balloon_wuerzburg
3
+ product: extraction_balloon_escort_2
4
+ product_group: Balloon
5
+ model: endoreg_db.ReferenceProduct
6
+ - fields:
7
+ name: reference_bougie_wuerzburg
8
+ product: esophageal_dilator
9
+ product_group: Bougie
10
+ model: endoreg_db.ReferenceProduct
11
+ - fields:
12
+ name: reference_wire_wuerzburg
13
+ product: visiglide_2
14
+ product_group: Wire
15
+ model: endoreg_db.ReferenceProduct
16
+ - fields:
17
+ name: reference_peg_wuerzburg
18
+ product: peg_freka_15_ch
19
+ product_group: PEG
20
+ model: endoreg_db.ReferenceProduct
21
+ - fields:
22
+ name: reference_instrument_wuerzburg
23
+ product: biopsy_grasper_hot_radial_jaw_4
24
+ product_group: Instrument
25
+ model: endoreg_db.ReferenceProduct
26
+ - fields:
27
+ name: reference_metalstent_wuerzburg
28
+ product: nitinol_stent_aix_oel
29
+ product_group: Metal-Stent
30
+ model: endoreg_db.ReferenceProduct
31
+ - fields:
32
+ name: reference_plasticstent_wuerzburg
33
+ product: biliary_stent_cotton_leung_sof_flex
34
+ product_group: Plastic-Stent
35
+ model: endoreg_db.ReferenceProduct
36
+ - fields:
37
+ name: reference_plastic_wuerzburg
38
+ product: bite_protector
39
+ product_group: Plastic
40
+ model: endoreg_db.ReferenceProduct
41
+ - fields:
42
+ name: reference_plastic-large_wuerzburg
43
+ product: pressure_syringe_60_ml
44
+ product_group: Plastic-Large
45
+ model: endoreg_db.ReferenceProduct
46
+ - fields:
47
+ name: reference_coat_wuerzburg
48
+ product: foliodress_gown_standard
49
+ product_group: Coat
50
+ model: endoreg_db.ReferenceProduct
51
+ - fields:
52
+ name: reference_absorbant-pad_wuerzburg
53
+ product: absorbant_pad
54
+ product_group: Absorbant-Pad
55
+ model: endoreg_db.ReferenceProduct
endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml ADDED
@@ -0,0 +1,30 @@
1
+ # yaml definitions for report reader flag objects
2
+ # PATIENT_INFO_LINE_FLAG = "Patient: "
3
+ # ENDOSCOPE_INFO_LINE_FLAG = "Gerät: "
4
+ # EXAMINER_INFO_LINE_FLAG = "1. Unters.:"
5
+ # CUT_OFF_BELOW_LINE_FLAG = "________________"
6
+
7
+ - model: endoreg_db.report_reader_flag
8
+ fields:
9
+ name: "ukw-examination-generic-patient-info-line"
10
+ value: "Patient: "
11
+
12
+ - model: endoreg_db.report_reader_flag
13
+ fields:
14
+ name: "ukw-examination-generic-endoscope-info-line"
15
+ value: "Gerät: "
16
+
17
+ - model: endoreg_db.report_reader_flag
18
+ fields:
19
+ name: "ukw-examination-generic-examiner-info-line"
20
+ value: "1. Unters.:"
21
+
22
+ - model: endoreg_db.report_reader_flag
23
+ fields:
24
+ name: "ukw-examination-generic-cut-off-below-line-01"
25
+ value: "________________"
26
+
27
+ - model: endoreg_db.report_reader_flag
28
+ fields:
29
+ name: "ukw-examination-generic-anamnese-info-line"
30
+ value: "Anamnese: "
endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml ADDED
@@ -0,0 +1,19 @@
1
+ - model: endoreg_db.report_reader_flag
2
+ fields:
3
+ name: "ukw-histology-generic-patient-info-line"
4
+ value: "Patient:"
5
+
6
+ - model: endoreg_db.report_reader_flag
7
+ fields:
8
+ name: "ukw-histology-generic-examiner-info-line"
9
+ value: "Eingang am:"
10
+
11
+ - model: endoreg_db.report_reader_flag
12
+ fields:
13
+ name: "ukw-histology-generic-cut-off-below-line-01"
14
+ value: "$$-3"
15
+
16
+ - model: endoreg_db.report_reader_flag
17
+ fields:
18
+ name: "ukw-histology-generic-endoscope-info-line"
19
+ value: ""