endoreg-db 0.3.6__py3-none-any.whl → 0.8.6.1__py3-none-any.whl

endoreg_db/data/requirement/medication.yaml

@@ -0,0 +1,93 @@
+- model: endoreg_db.requirement
+  fields:
+    name: "medication_aspirin_is_defined_in_requirement"
+    requirement_types: ["medication"]
+    operators: ["models_match_any"]
+    medications: ["aspirin"]
+
+- model: endoreg_db.requirement
+  fields:
+    name: "medication_apixaban_is_defined_in_requirement"
+    requirement_types: ["medication"]
+    operators: ["models_match_any"]
+    medications: ["apixaban"]
+
+- model: endoreg_db.requirement
+  fields:
+    name: "indication_non_valvular_af_apixaban_is_defined_in_requirement"
+    requirement_types: ["medication_indication"]
+    operators: ["models_match_any"]
+    medication_indications: ["te_prevention-non_valvular_af-apixaban"]
+
+# medication indication te_prevention-after_hip-apixaban
+- model: endoreg_db.requirement
+  fields:
+    name: "indication_after_hip_apixaban_is_defined_in_requirement"
+    requirement_types: ["medication_indication"]
+    operators: ["models_match_any"]
+    medication_indications: ["te_prevention-after_hip-apixaban"]
+
+# te_prevention-after_knee-apixaban
+- model: endoreg_db.requirement
+  fields:
+    name: "indication_after_knee_apixaban_is_defined_in_requirement"
+    requirement_types: ["medication_indication"]
+    operators: ["models_match_any"]
+    medication_indications: ["te_prevention-after_knee-apixaban"]
+
+# te_prevention-non_valvular_af-apixaban
+- model: endoreg_db.requirement
+  fields:
+    name: "intake_time_daily_morning_for_non_valvular_af_apixaban_is_defined_in_requirement"
+    requirement_types: ["medication_intake_time"]
+    operators: ["models_match_any"]
+    medication_intake_times: ["daily-morning"]
+
+- model: endoreg_db.requirement
+  fields:
+    name: "intake_time_daily_morning_is_defined_in_requirement"
+    requirement_types: ["medication_intake_time"]
+    operators: ["models_match_any"]
+    medication_intake_times: ["daily-morning"]
+
+- model: endoreg_db.requirement
+  fields:
+    name: "schedule_apixaban_5mg_bid_is_defined_in_requirement"
+    requirement_types: ["medication_schedule"]
+    operators: ["models_match_any"]
+    medication_schedules: ["apixaban-5mg-twice_daily"]
+
+- model: endoreg_db.requirement
+  fields:
+    name: "patient_has_medication_aspirin"
+    requirement_types: ["patient", "patient_medication", "patient_medication_schedule"]
+    operators: ["models_match_any"]
+    medications: ["aspirin"] # Checks against PatientMedication.medication
+
+- model: endoreg_db.requirement
+  fields:
+    name: "patient_has_medication_apixaban_for_non_valvular_af"
+    requirement_types: ["patient", "patient_medication", "patient_medication_schedule"]
+    operators: ["models_match_any"]
+    medications: ["apixaban"]
+    medication_indications: ["te_prevention-non_valvular_af-apixaban"] # Checks against PatientMedication.medication_indication
+
+- model: endoreg_db.requirement
+  fields:
+    name: "patient_medication_intake_includes_daily_morning"
+    requirement_types: [
+      "patient", 
+      "patient_medication",
+      "patient_medication_schedule" # Added
+    ]
+    operators: ["models_match_any"]
+    # This requirement implies that the operator will look into the
+    # PatientMedication.intake_times M2M field.
+    medication_intake_times: ["daily-morning"]
+
+- model: endoreg_db.requirement
+  fields:
+    name: "patient_schedule_contains_apixaban_5mg_bid_profile"
+    requirement_types: ["patient", "patient_medication_schedule"]
+    operators: ["patient_medication_schedule_matches_template"] # Changed operator
+    medication_schedules: ["apixaban-5mg-twice_daily"]

endoreg_db/data/requirement_operator/age.yaml

@@ -0,0 +1,13 @@
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "age_gte"
+    name_de: "Alter >="
+    name_en: "Age >="
+    description: "Make sure that the provided age is greater than or equal to the given value. The value is defined using the numeric_value_min field."
+
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "age_lte"
+    name_de: "Alter <="
+    name_en: "Age <="
+    description: "Make sure that the provided age is less than or equal to the given value. The value is defined using the numeric_value_max field."

endoreg_db/data/requirement_operator/lab_operators.yaml

@@ -0,0 +1,129 @@
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_numeric_normal"
+    name_de: "Laborwert normal"
+    name_en: "Lab value normal"
+    description: "Make sure that the provided numeric lab value is within the normal range. The normal range is defined using the numeric_value_min and numeric_value_max fields. To work, the passed lab value must have a reference value"
+    
+# lab_numeric_increased
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_numeric_increased"
+    name_de: "Laborwert erhöht"
+    name_en: "Lab value increased"
+    description: "Make sure that the provided numeric lab value is above the normal range. The normal range is defined using the numeric_value_min and numeric_value_max fields."
+    
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_numeric_decreased"
+    name_de: "Laborwert verringert"
+    name_en: "Lab value decreased"
+    description: "Make sure that the provided numeric lab value is below the normal range. The normal range is defined using the numeric_value_min and numeric_value_max fields."
+    
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_numeric_decreased_factor"
+    name_de: "Laborwert um Faktor verringert"
+    name_en: "Lab value decreased by factor"
+    description: "Make sure that the provided numeric lab value is decreased by a factor. The factor is defined using the numeric_value_min field."
+    
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_numeric_increased_factor"
+    name_de: "Laborwert um Faktor erhöht"
+    name_en: "Lab value increased by factor"
+    description: "Make sure that the provided numeric lab value is increased by a factor. The factor is defined using the numeric_value_min field."
+    
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_numeric_lower_than_value"
+    name_de: "Laborwert kleiner als Wert"
+    name_en: "Lab value lower than value"
+    description: "Make sure that the provided numeric lab value is lower than the given value. The value is defined using the numeric_value_min field."
+    
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_numeric_greater_than_value"
+    name_de: "Laborwert größer als Wert"
+    name_en: "Lab value greater than value"
+    description: "Make sure that the provided numeric lab value is greater than the given value. The value is defined using the numeric_value_min field."
+    
+# Timeframe
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_numeric_normal_in_timeframe"
+    name_de: "Laborwert normal im angegebenen Zeitraum"
+    name_en: "Lab value normal in the given timeframe"
+    description: "Make sure that the provided numeric lab value is always within the normal range within the given timeframe. The normal range is defined using the numeric_value_min and numeric_value_max fields and the timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week)."
+    
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_numeric_decreased_factor_in_timeframe"
+    name_de: "Laborwert um Faktor verringert im angegebenen Zeitraum"
+    name_en: "Lab value decreased by factor in the given timeframe"
+    description: "Make sure that the provided numeric lab value is always decreased by a factor within the given timeframe. The factor is defined using the numeric_value_min field and the timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week)."
+    
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_numeric_increased_factor_in_timeframe"
+    name_de: "Laborwert um Faktor erhöht im angegebenen Zeitraum"
+    name_en: "Lab value increased by factor in the given timeframe"
+    description: "Make sure that the provided numeric lab value is always increased by a factor within the given timeframe. The factor is defined using the numeric_value_min field and the timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week)."
+    
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_numeric_lower_than_value_in_timeframe"
+    name_de: "Laborwert kleiner als Wert im angegebenen Zeitraum"
+    name_en: "Lab value lower than value in the given timeframe"
+    description: "Make sure that the provided numeric lab value is lower than the given value within the given timeframe. The value is defined using the numeric_value_min field and the timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week)."
+    
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_numeric_greater_than_value_in_timeframe"
+    name_de: "Laborwert größer als Wert im angegebenen Zeitraum"
+    name_en: "Lab value greater than value in the given timeframe"
+    description: "Make sure that the provided numeric lab value is greater than the given value within the given timeframe. The value is defined using the numeric_value_min field and the timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week)."
+    
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_categorical_match"
+    name_de: "Text-basierter Laborwert entspricht exakt"
+    name_en: "Text-based lab value matches exactly"
+    description: "Make sure that the provided categorical lab value matches exactly the given value. The value is defined using the string_value field."
+    
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_categorical_match_substring"
+    name_de: "Text-basierter Laborwert enthält Teilstring"
+    name_en: "Text-based lab value contains substring"
+    description: "Make sure that the provided categorical lab value contains the given substring. The substring is defined using the string_value field."
+    
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_categorical_match_regex"
+    name_de: "Text-basierter Laborwert entspricht Regex"
+    name_en: "Text-based lab value matches regex"
+    description: "Make sure that the provided categorical lab value matches the given regex. The regex is defined using the string_value field."
+    
+# Timeframe
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_categorical_match_in_timeframe"
+    name_de: "Text-basierter Laborwert entspricht exakt im angegebenen Zeitraum"
+    name_en: "Text-based lab value matches exactly in the given timeframe"
+    description: "Make sure that the provided categorical lab value matches exactly the given value within the given timeframe. The value is defined using the string_value field and the timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week)."
+    
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_categorical_match_substring_in_timeframe"
+    name_de: "Text-basierter Laborwert enthält Teilstring im angegebenen Zeitraum"
+    name_en: "Text-based lab value contains substring in the given timeframe"
+    description: "Make sure that the provided categorical lab value contains the given substring within the given timeframe. The substring is defined using the string_value field and the timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week)."
+    
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "lab_latest_categorical_match_regex_in_timeframe"
+    name_de: "Text-basierter Laborwert entspricht Regex im angegebenen Zeitraum"
+    name_en: "Text-based lab value matches regex in the given timeframe"
+    description: "Make sure that the provided categorical lab value matches the given regex within the given timeframe. The regex is defined using the string_value field and the timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week)."
+    

endoreg_db/data/requirement_operator/model_operators.yaml

@@ -0,0 +1,96 @@
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "models_match_all"
+    name_de: "Modelle existieren"
+    name_en: "Models exist"
+    description: "Make sure that all the provided Foreign Key models exist."
+
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "models_match_any"
+    name_de: "Mindestens ein Modell existiert"
+    name_en: "At least one model exists"
+    description: "Make sure that at least one of the provided Foreign Key models exist."
+
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "models_match_none"
+    name_de: "Kein Modell existiert"
+    name_en: "No model exists"
+    description: "Make sure that none of the provided Foreign Key models exist."
+
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "models_match_n"
+    name_de: " Exakt n Modelle existieren"
+    name_en: "Exactly n models exist"
+    description: "Make sure that exactly n of the provided Foreign Key models exist. The number n is defined using the numeric_value_min field."
+
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "models_match_n_or_more"
+    name_de: "Mindestens n Modelle existieren"
+    name_en: "At least n models exist"
+    description: "Make sure that at least n of the provided Foreign Key models exist. The number n is defined using the numeric_value_min field."
+
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "models_match_n_or_less"
+    name_de: "Höchstens n Modelle existieren"
+    name_en: "At most n models exist"
+    description: "Make sure that at most n of the provided Foreign Key models exist. The number n is defined using the numeric_value_min field."
+
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "models_match_count_in_range"
+    name_de: "Anzahl der Modelle liegt im angegebenen Bereich"
+    name_en: "Number of models is in the given range"
+    description: "Make sure that the number of provided Foreign Key models is in the given range. The range is defined using numeric_value_min and numeric_value_max."
+
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "models_match_any_in_timeframe"
+    name_de: "Mindestens ein Modell existiert im angegebenen Zeitraum"
+    name_en: "At least one model exists in the given timeframe"
+    description: "Make sure that at least one of the provided Foreign Key models exist and its associated date falls within the specified timeframe. Timeframe is defined by numeric_value_min, numeric_value_max, and unit on the Requirement."
+
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "models_match_all_in_timeframe"
+    name_de: "Modelle existieren im angegebenen Zeitraum"
+    name_en: "Models exist in the given timeframe"
+    description: "Make sure that all the provided Foreign Key models have a date within the given timeframe. The timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week)."
+
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "models_match_none_in_timeframe"
+    name_de: "Kein Modell existiert im angegebenen Zeitraum"
+    name_en: "No model exists in the given timeframe"
+    description: "Make sure that none of the provided Foreign Key models have a date within the given timeframe. The timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week)."
+
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "models_match_n_in_timeframe"
+    name_de: "Exakt n Modelle existieren im angegebenen Zeitraum"
+    name_en: "Exactly n models exist in the given timeframe"
+    description: "Make sure that exactly n of the provided Foreign Key models have a date within the given timeframe. The timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week). The number n is defined using the numeric_value_min field."
+
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "models_match_n_or_more_in_timeframe"
+    name_de: "Mindestens n Modelle existieren im angegebenen Zeitraum"
+    name_en: "At least n models exist in the given timeframe"
+    description: "Make sure that at least n of the provided Foreign Key models have a date within the given timeframe. The timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week). The number n is defined using the numeric_value_min field."
+
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "models_match_n_or_less_in_timeframe"
+    name_de: "Höchstens n Modelle existieren im angegebenen Zeitraum"
+    name_en: "At most n models exist in the given timeframe"
+    description: "Make sure that at most n of the provided Foreign Key models have a date within the given timeframe. The timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week). The number n is defined using the numeric_value_min field."
+
+- model: endoreg_db.requirement_operator
+  fields:
+    name: "patient_medication_schedule_matches_template"
+    description: "Checks if any PatientMedication in the input PatientMedicationSchedule matches the profile (medication, dose, unit, intake times) of any MedicationSchedule template linked to the requirement."
+    evaluation_function_name: "_evaluate_patient_medication_schedule_matches_template"

endoreg_db/data/requirement_set/01_endoscopy_generic.yaml

@@ -0,0 +1,48 @@
+- models: endoreg_db.requirement_set
+  fields:
+    name: "patient_gender_generic"
+    name_de: "Patientengeschlecht (männlich/weiblich)"
+    name_en: "Patient gender generic" 
+    description: "Patient gender (generic)"
+    requirement_set_type: "any"
+    requirements:
+      - patient_gender_is_male
+      - patient_gender_is_female
+
+- models: endoreg_db.requirement_set
+  fields:
+    name: "basic_lab_values_normal"
+    name_de: "Basis-Labortests (Unauffällig)"
+    name_en: "Basic Lab Tests (Normal)"
+    description: "Basic lab tests (normal)"
+    requirement_set_type: "all"
+    requirements:
+      - "lab_value_hb_normal"
+      - "lab_value_leukocytes_normal"
+      - "lab_value_platelets_normal"
+      - "lab_value_creatinine_normal"
+      - "lab_value_inr_normal"
+
+- models: endoreg_db.requirement_set
+  fields:
+    name: "patient_age_generic"
+    name_de: "Patientenalter (18-100 Jahre)"
+    name_en: "Patient Age (18-100 years)"
+    description: "Patient age between 18 and 100 years"
+    requirement_set_type: "all"
+    requirements:
+      - "patient_age_gte_18"
+      - "patient_age_lte_100"
+
+# - models: endoreg_db.requirement_set
+- models: endoreg_db.requirement_set
+  fields:
+    name: "generic_patient"
+    requirement_set_type: "all"
+    description: "Generic patient requirement set"
+    name_de: "Generische Patientenanforderung"
+    name_en: "Generic Patient Requirement"
+    links_to_sets:
+      - "patient_age_generic"
+      - "patient_gender_generic"
+      - "basic_lab_values_normal"

endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml

@@ -0,0 +1,57 @@
+
+
+- models: endoreg_db.requirement_set
+  fields:
+    name: "colonoscopy_austria_screening_finding_polyp_required_classifications"
+    name_de: "Vorsorge Koloskopie Österreich: Polyp"
+    requirement_set_type: "all"
+    links_to_sets: []
+    requirements:
+      - "colon_austria_screening_polyp_size"
+      - "colonoscopy_austria_screening_polyp_location"
+      - "colonoscopy_austria_screening_polyp_histology"
+
+- models: endoreg_db.requirement_set
+  fields:
+    name: "colonoscopy_austria_screening_examination_complete"
+    requirement_set_type: "any"
+    requirements:
+      - "colonoscopy_austria_screening_examination_cecum_visualized"
+      - "colonoscopy_austria_screening_examination_reason_incomplete"
+
+- models: endoreg_db.requirement_set
+  fields:
+    name: "colonoscopy_austria_screening_examination_required_findings"
+    links_to_sets:
+      - "colonoscopy_austria_screening_examination_complete"
+    requirement_set_type: "all"
+    requirements:
+      - "colonoscopy_austria_screening_bowel_prep"
+      - "colonoscopy_austria_screening_sedation"
+
+- models: endoreg_db.requirement_set
+  fields:
+    name: "colonoscopy_austria_screening_required_patient_information"
+    name_de: "Vorsorge Koloskopie Österreich: Patienteninformation"
+    requirement_set_type: "all"
+    links_to_sets:
+      - "patient_gender_generic"
+      - "patient_age_generic"
+
+- models: endoreg_db.requirement_set
+  fields:
+    name: "colonoscopy_austria_screening_qa"
+    name_de: "Vorsorge Koloskopie Österreich QA"
+    name_en: "Colonoscopy Austria Screening QA"
+    description: "Colonoscopy Austria Screening QA"
+    requirement_set_type: "all"
+    links_to_sets:
+      - "colonoscopy_austria_screening_finding_polyp_required_classifications"
+      - "colonoscopy_austria_screening_required_patient_information"
+      - "colonoscopy_austria_screening_examination_required_findings"
+    tags:
+      - "report_mask_requirement_set"
+      - "colonoscopy_austria_screening"
+    reqset_exam_links:
+      - "colonoscopy_austria_req_sets"
+      - "colonoscopy_req_sets"

endoreg_db/data/requirement_set/endoscopy_bleeding_risk.yaml

@@ -0,0 +1,52 @@
+- models: endoreg_db.requirement_set
+  fields:
+    name: "endoscopy_bleeding_risk_high"
+    name_de: "Endoskopie - Blutungsrisiko: hoch"
+    name_en: "Endoscopy - Bleeding Risk: High"
+    description: "Endoskopie - Blutungsrisiko: hoch"
+    # linked_sets: [] # if this rule depends on others
+    requirement_set_type: "any"
+    requirements:
+      - "endoscopy_intervention_bleeding_risk_high"
+
+
+
+- models: endoreg_db.requirement_set
+  fields:
+    name: "endoscopy_bleeding_risk_low"
+    name_de: "Endoskopie - Blutungsrisiko: niedrig"
+    name_en: "Endoscopy - Bleeding Risk: Low"
+    description: "Endoskopie - Blutungsrisiko: niedrig"
+    # linked_sets: [] # if this rule depends on others
+    requirement_set_type: "any"
+    requirements:
+      - "endoscopy_intervention_bleeding_risk_low"
+    links_to_sets: []
+
+
+
+    
+- models: endoreg_db.requirement_set
+  fields:
+    name: "patient_medication_indication_anticoagulation"
+    name_de: "Patientenmedikation - Antikoagulation"
+    name_en: "Patient Medication - Anticoagulation"
+    description: "Patient medication - anticoagulation"
+    requirement_set_type: "any"
+    requirements:
+      - "indication_non_valvular_af_apixaban_is_defined_in_requirement"
+      - "indication_after_hip_apixaban_is_defined_in_requirement"
+      - "indication_after_knee_apixaban_is_defined_in_requirement"
+    
+
+- models: endoreg_db.requirement_set
+  fields:
+    name: "high_bleed_risk_endoscopy_w_patient_w_anticoagulation"
+    name_de: "Endoskopie - hohes Blutungsrisiko mit generischen Patientenanforderungen"
+    name_en: "High Bleed Risk Endoscopy with Generic Patient Requirements"
+    description: "High bleed risk endoscopy with generic patient requirements"
+    requirement_set_type: "all"
+    links_to_sets:
+      - "endoscopy_bleeding_risk_high"
+      - "generic_patient"
+      - "patient_medication_indication_anticoagulation"

endoreg_db/data/requirement_set_type/data.yaml

@@ -0,0 +1,20 @@
+- model: endoreg_db.requirement_set_type
+  fields:
+    name: "all"
+    name_de: "alle"
+    name_en: "all"
+    description: "All requirement are true"
+
+- model: endoreg_db.requirement_set_type
+  fields:
+    name: "any"
+    name_de: "mindestens eine"
+    name_en: "at least one"
+    description: "At least one requirement is true"
+
+- model: endoreg_db.requirement_set_type
+  fields:
+    name: "none"
+    name_de: "keine"
+    name_en: "none"
+    description: "No requirement is true"