empix 0.0.1__py3-none-any.whl → 0.0.2__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- empix/__init__.py +97 -133
- empix/version.py +2 -2
- {empix-0.0.1.dist-info → empix-0.0.2.dist-info}/METADATA +11 -11
- empix-0.0.2.dist-info/RECORD +7 -0
- {empix-0.0.1.dist-info → empix-0.0.2.dist-info}/WHEEL +1 -1
- empix-0.0.1.dist-info/RECORD +0 -7
- {empix-0.0.1.dist-info → empix-0.0.2.dist-info}/LICENSE +0 -0
- {empix-0.0.1.dist-info → empix-0.0.2.dist-info}/top_level.txt +0 -0
empix/__init__.py
CHANGED
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@@ -23,12 +23,6 @@ microscopy data that are not available in `hyperspy
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## Load libraries/packages/modules ##
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#####################################
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# For accessing attributes of functions.
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import inspect
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# For randomly selecting items in dictionaries.
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import random
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# For performing deep copies.
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import copy
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@@ -62,7 +56,7 @@ import skimage.measure
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# Get version of current package.
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from
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from empix.version import __version__
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@@ -92,9 +86,7 @@ __all__ = ["abs_sq",
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def _check_and_convert_action_to_apply_to_input_signal(params):
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char_idx = 19
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obj_name = current_func_name[char_idx:]
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obj_name = "action_to_apply_to_input_signal"
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action_to_apply_to_input_signal = params[obj_name]
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return action_to_apply_to_input_signal
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@@ -102,9 +94,7 @@ def _check_and_convert_action_to_apply_to_input_signal(params):
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def _check_and_convert_input_signal(params):
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char_idx = 19
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obj_name = current_func_name[char_idx:]
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obj_name = "input_signal"
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input_signal = params[obj_name]
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action_to_apply_to_input_signal = params["action_to_apply_to_input_signal"]
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@@ -131,9 +121,7 @@ def _check_and_convert_input_signal(params):
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def _check_and_convert_title(params):
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char_idx = 19
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obj_name = current_func_name[char_idx:]
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obj_name = "title"
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obj = params[obj_name]
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accepted_types = (str, type(None))
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@@ -184,7 +172,7 @@ def _generate_title(input_signal, action_to_apply_to_input_signal):
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def _pre_serialize_title(title):
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obj_to_pre_serialize =
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obj_to_pre_serialize = title
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serializable_rep = obj_to_pre_serialize
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return serializable_rep
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@@ -227,17 +215,16 @@ def abs_sq(input_signal, title=_default_title):
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"""
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params = locals()
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params["action_to_apply_to_input_signal"] =
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params["action_to_apply_to_input_signal"] = "abs_sq"
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global_symbol_table = globals()
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for param_name in params:
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func_name = "_check_and_convert_" + param_name
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func_alias =
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func_alias = global_symbol_table[func_name]
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params[param_name] = func_alias(params)
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func_name = "_" + inspect.stack()[0][3]
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func_alias = globals()[func_name]
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kwargs = params
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del kwargs["action_to_apply_to_input_signal"]
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output_signal =
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output_signal = _abs_sq(**kwargs)
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return output_signal
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@@ -257,9 +244,7 @@ def _abs_sq(input_signal, title):
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def _check_and_convert_center(params):
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char_idx = 19
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obj_name = current_func_name[char_idx:]
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obj_name = "center"
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obj = params[obj_name]
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param_name = "action_to_apply_to_input_signal"
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@@ -267,6 +252,8 @@ def _check_and_convert_center(params):
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param_name = "input_signal"
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input_signal = params.get(param_name, None)
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current_func_name = "_check_and_convert_center"
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if obj is not None:
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try:
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def _pre_serialize_center(center):
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obj_to_pre_serialize =
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obj_to_pre_serialize = center
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serializable_rep = obj_to_pre_serialize
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return serializable_rep
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@@ -346,13 +333,13 @@ def _de_pre_serialize_center(serializable_rep):
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def _check_and_convert_radial_range(params):
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char_idx = 19
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obj_name = current_func_name[char_idx:]
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obj_name = "radial_range"
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obj = params[obj_name]
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param_name = "input_signal"
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input_signal = params.get(param_name, None)
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current_func_name = "_check_and_convert_radial_range"
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if obj is not None:
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def _pre_serialize_radial_range(radial_range):
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obj_to_pre_serialize =
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obj_to_pre_serialize = radial_range
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serializable_rep = obj_to_pre_serialize
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return serializable_rep
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@@ -396,13 +383,13 @@ def _de_pre_serialize_radial_range(serializable_rep):
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def _check_and_convert_num_bins(params):
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obj_name = current_func_name[char_idx:]
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obj_name = "num_bins"
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obj = params[obj_name]
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param_name = "input_signal"
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input_signal = params.get(param_name, None)
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current_func_name = "_check_and_convert_num_bins"
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if obj is not None:
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def _pre_serialize_num_bins(num_bins):
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obj_to_pre_serialize =
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obj_to_pre_serialize = num_bins
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serializable_rep = obj_to_pre_serialize
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return serializable_rep
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def _check_and_convert_optional_params(params):
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obj_name = current_func_name[char_idx:]
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obj_name = "optional_params"
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obj = params[obj_name]
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param_name = "action_to_apply_to_input_signal"
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{"input_signal": _check_and_convert_input_signal(params),
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"action_to_apply_to_input_signal": action_to_apply_to_input_signal,
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**optional_params_core_attrs}
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global_symbol_table = globals()
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for param_name in optional_params_core_attrs:
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func_name = "_check_and_convert_" + param_name
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func_alias =
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func_alias = global_symbol_table[func_name]
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optional_params_core_attrs[param_name] = func_alias(params)
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kwargs = {"skip_validation_and_conversion": True,
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"""
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params = locals()
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params["action_to_apply_to_input_signal"] =
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params["action_to_apply_to_input_signal"] = "azimuthally_average"
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global_symbol_table = globals()
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for param_name in params:
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func_name = "_check_and_convert_" + param_name
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func_alias =
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func_alias = global_symbol_table[func_name]
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params[param_name] = func_alias(params)
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func_name = "_" + inspect.stack()[0][3]
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func_alias = globals()[func_name]
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kwargs = params
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output_signal =
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output_signal = _azimuthally_average(**kwargs)
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"""
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params = locals()
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params["action_to_apply_to_input_signal"] =
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params["action_to_apply_to_input_signal"] = "azimuthally_integrate"
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global_symbol_table = globals()
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for param_name in params:
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func_name = "_check_and_convert_" + param_name
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func_alias =
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func_alias = global_symbol_table[func_name]
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params[param_name] = func_alias(params)
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func_name = "_" + inspect.stack()[0][3]
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func_alias = globals()[func_name]
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kwargs = params
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output_signal =
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output_signal = _azimuthally_integrate(**kwargs)
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params["action_to_apply_to_input_signal"] =
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params["action_to_apply_to_input_signal"] = "annularly_average"
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global_symbol_table = globals()
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for param_name in params:
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func_name = "_check_and_convert_" + param_name
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func_alias =
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func_alias = global_symbol_table[func_name]
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params[param_name] = func_alias(params)
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func_name = "_" + inspect.stack()[0][3]
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func_alias = globals()[func_name]
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kwargs = params
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output_signal =
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output_signal = _annularly_average(**kwargs)
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return output_signal
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params["action_to_apply_to_input_signal"] =
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params["action_to_apply_to_input_signal"] = "annularly_integrate"
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global_symbol_table = globals()
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func_name = "_check_and_convert_" + param_name
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func_alias =
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func_alias = global_symbol_table[func_name]
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func_name = "_" + inspect.stack()[0][3]
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func_alias = globals()[func_name]
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kwargs = params
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output_signal =
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output_signal = _annularly_integrate(**kwargs)
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def _check_and_convert_limits(params):
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obj_name = "limits"
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obj = params[obj_name]
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current_func_name = "_check_and_convert_limits"
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if obj is not None:
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kwargs = {"obj": obj, "obj_name": obj_name}
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@@ -1862,7 +1844,7 @@ def _calc_u_coords_1d(signal):
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def _pre_serialize_limits(limits):
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obj_to_pre_serialize = limits
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serializable_rep = obj_to_pre_serialize
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def _check_and_convert_normalize(params):
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obj_name = current_func_name[char_idx:]
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obj_name = "normalize"
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kwargs = {"obj": params[obj_name], "obj_name": obj_name}
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normalize = czekitout.convert.to_bool(**kwargs)
|
|
1885
1865
|
|
|
@@ -1888,7 +1868,7 @@ def _check_and_convert_normalize(params):
|
|
|
1888
1868
|
|
|
1889
1869
|
|
|
1890
1870
|
def _pre_serialize_normalize(normalize):
|
|
1891
|
-
obj_to_pre_serialize =
|
|
1871
|
+
obj_to_pre_serialize = normalize
|
|
1892
1872
|
serializable_rep = obj_to_pre_serialize
|
|
1893
1873
|
|
|
1894
1874
|
return serializable_rep
|
|
@@ -2137,17 +2117,16 @@ def cumulatively_integrate_1d(input_signal,
|
|
|
2137
2117
|
|
|
2138
2118
|
"""
|
|
2139
2119
|
params = locals()
|
|
2140
|
-
params["action_to_apply_to_input_signal"] =
|
|
2120
|
+
params["action_to_apply_to_input_signal"] = "cumulatively_integrate_1d"
|
|
2121
|
+
global_symbol_table = globals()
|
|
2141
2122
|
for param_name in params:
|
|
2142
2123
|
func_name = "_check_and_convert_" + param_name
|
|
2143
|
-
func_alias =
|
|
2124
|
+
func_alias = global_symbol_table[func_name]
|
|
2144
2125
|
params[param_name] = func_alias(params)
|
|
2145
2126
|
|
|
2146
|
-
func_name = "_" + inspect.stack()[0][3]
|
|
2147
|
-
func_alias = globals()[func_name]
|
|
2148
2127
|
kwargs = params
|
|
2149
2128
|
del kwargs["action_to_apply_to_input_signal"]
|
|
2150
|
-
output_signal =
|
|
2129
|
+
output_signal = _cumulatively_integrate_1d(**kwargs)
|
|
2151
2130
|
|
|
2152
2131
|
return output_signal
|
|
2153
2132
|
|
|
@@ -2264,14 +2243,14 @@ def _cumulatively_integrate_input_signal_datasubset(input_signal_datasubset,
|
|
|
2264
2243
|
|
|
2265
2244
|
|
|
2266
2245
|
def _check_and_convert_window_dims(params):
|
|
2267
|
-
|
|
2268
|
-
char_idx = 19
|
|
2269
|
-
obj_name = current_func_name[char_idx:]
|
|
2246
|
+
obj_name = "window_dims"
|
|
2270
2247
|
obj = params[obj_name]
|
|
2271
2248
|
|
|
2272
2249
|
param_name = "input_signal"
|
|
2273
2250
|
input_signal = params.get(param_name, None)
|
|
2274
2251
|
|
|
2252
|
+
current_func_name = "_check_and_convert_window_dims"
|
|
2253
|
+
|
|
2275
2254
|
if obj is not None:
|
|
2276
2255
|
try:
|
|
2277
2256
|
kwargs = {"obj": obj, "obj_name": obj_name}
|
|
@@ -2291,7 +2270,7 @@ def _check_and_convert_window_dims(params):
|
|
|
2291
2270
|
|
|
2292
2271
|
|
|
2293
2272
|
def _pre_serialize_window_dims(window_dims):
|
|
2294
|
-
obj_to_pre_serialize =
|
|
2273
|
+
obj_to_pre_serialize = window_dims
|
|
2295
2274
|
serializable_rep = obj_to_pre_serialize
|
|
2296
2275
|
|
|
2297
2276
|
return serializable_rep
|
|
@@ -2306,9 +2285,7 @@ def _de_pre_serialize_window_dims(serializable_rep):
|
|
|
2306
2285
|
|
|
2307
2286
|
|
|
2308
2287
|
def _check_and_convert_pad_mode(params):
|
|
2309
|
-
|
|
2310
|
-
char_idx = 19
|
|
2311
|
-
obj_name = current_func_name[char_idx:]
|
|
2288
|
+
obj_name = "pad_mode"
|
|
2312
2289
|
obj = params[obj_name]
|
|
2313
2290
|
|
|
2314
2291
|
kwargs = {"obj": obj, "obj_name": obj_name}
|
|
@@ -2322,7 +2299,7 @@ def _check_and_convert_pad_mode(params):
|
|
|
2322
2299
|
|
|
2323
2300
|
|
|
2324
2301
|
def _pre_serialize_pad_mode(pad_mode):
|
|
2325
|
-
obj_to_pre_serialize =
|
|
2302
|
+
obj_to_pre_serialize = pad_mode
|
|
2326
2303
|
serializable_rep = obj_to_pre_serialize
|
|
2327
2304
|
|
|
2328
2305
|
return serializable_rep
|
|
@@ -2337,9 +2314,7 @@ def _de_pre_serialize_pad_mode(serializable_rep):
|
|
|
2337
2314
|
|
|
2338
2315
|
|
|
2339
2316
|
def _check_and_convert_apply_symmetric_mask(params):
|
|
2340
|
-
|
|
2341
|
-
char_idx = 19
|
|
2342
|
-
obj_name = current_func_name[char_idx:]
|
|
2317
|
+
obj_name = "apply_symmetric_mask"
|
|
2343
2318
|
kwargs = {"obj": params[obj_name], "obj_name": obj_name}
|
|
2344
2319
|
apply_symmetric_mask = czekitout.convert.to_bool(**kwargs)
|
|
2345
2320
|
|
|
@@ -2348,7 +2323,7 @@ def _check_and_convert_apply_symmetric_mask(params):
|
|
|
2348
2323
|
|
|
2349
2324
|
|
|
2350
2325
|
def _pre_serialize_apply_symmetric_mask(apply_symmetric_mask):
|
|
2351
|
-
obj_to_pre_serialize =
|
|
2326
|
+
obj_to_pre_serialize = apply_symmetric_mask
|
|
2352
2327
|
serializable_rep = obj_to_pre_serialize
|
|
2353
2328
|
|
|
2354
2329
|
return serializable_rep
|
|
@@ -2608,25 +2583,22 @@ def crop(input_signal, optional_params=_default_optional_params):
|
|
|
2608
2583
|
|
|
2609
2584
|
"""
|
|
2610
2585
|
params = locals()
|
|
2611
|
-
params["action_to_apply_to_input_signal"] =
|
|
2586
|
+
params["action_to_apply_to_input_signal"] = "crop"
|
|
2587
|
+
global_symbol_table = globals()
|
|
2612
2588
|
for param_name in params:
|
|
2613
2589
|
func_name = "_check_and_convert_" + param_name
|
|
2614
|
-
func_alias =
|
|
2590
|
+
func_alias = global_symbol_table[func_name]
|
|
2615
2591
|
params[param_name] = func_alias(params)
|
|
2616
2592
|
|
|
2617
|
-
func_name = "_" + inspect.stack()[0][3]
|
|
2618
|
-
func_alias = globals()[func_name]
|
|
2619
2593
|
kwargs = params
|
|
2620
2594
|
del kwargs["action_to_apply_to_input_signal"]
|
|
2621
|
-
output_signal =
|
|
2595
|
+
output_signal = _crop(**kwargs)
|
|
2622
2596
|
|
|
2623
2597
|
return output_signal
|
|
2624
2598
|
|
|
2625
2599
|
|
|
2626
2600
|
|
|
2627
2601
|
def _crop(input_signal, optional_params):
|
|
2628
|
-
current_func_name = inspect.stack()[0][3]
|
|
2629
|
-
|
|
2630
2602
|
optional_params_core_attrs = optional_params.get_core_attrs(deep_copy=False)
|
|
2631
2603
|
title = optional_params_core_attrs["title"]
|
|
2632
2604
|
|
|
@@ -2637,6 +2609,8 @@ def _crop(input_signal, optional_params):
|
|
|
2637
2609
|
navigation_dims = input_signal.data.shape[:-2]
|
|
2638
2610
|
num_patterns = int(np.prod(navigation_dims))
|
|
2639
2611
|
|
|
2612
|
+
current_func_name = "_crop"
|
|
2613
|
+
|
|
2640
2614
|
for pattern_idx in range(0, num_patterns):
|
|
2641
2615
|
navigation_indices = np.unravel_index(pattern_idx, navigation_dims)
|
|
2642
2616
|
input_signal_datasubset = input_signal.data[navigation_indices]
|
|
@@ -2798,9 +2772,7 @@ def _crop_input_signal_datasubset(input_signal_datasubset,
|
|
|
2798
2772
|
|
|
2799
2773
|
|
|
2800
2774
|
def _check_and_convert_block_dims(params):
|
|
2801
|
-
|
|
2802
|
-
char_idx = 19
|
|
2803
|
-
obj_name = current_func_name[char_idx:]
|
|
2775
|
+
obj_name = "block_dims"
|
|
2804
2776
|
kwargs = {"obj": params[obj_name], "obj_name": obj_name}
|
|
2805
2777
|
block_dims = czekitout.convert.to_pair_of_positive_ints(**kwargs)
|
|
2806
2778
|
|
|
@@ -2809,7 +2781,7 @@ def _check_and_convert_block_dims(params):
|
|
|
2809
2781
|
|
|
2810
2782
|
|
|
2811
2783
|
def _pre_serialize_block_dims(block_dims):
|
|
2812
|
-
obj_to_pre_serialize =
|
|
2784
|
+
obj_to_pre_serialize = block_dims
|
|
2813
2785
|
serializable_rep = obj_to_pre_serialize
|
|
2814
2786
|
|
|
2815
2787
|
return serializable_rep
|
|
@@ -2824,9 +2796,7 @@ def _de_pre_serialize_block_dims(serializable_rep):
|
|
|
2824
2796
|
|
|
2825
2797
|
|
|
2826
2798
|
def _check_and_convert_padding_const(params):
|
|
2827
|
-
|
|
2828
|
-
char_idx = 19
|
|
2829
|
-
obj_name = current_func_name[char_idx:]
|
|
2799
|
+
obj_name = "padding_const"
|
|
2830
2800
|
kwargs = {"obj": params[obj_name], "obj_name": obj_name}
|
|
2831
2801
|
padding_const = czekitout.convert.to_float(**kwargs)
|
|
2832
2802
|
|
|
@@ -2835,7 +2805,7 @@ def _check_and_convert_padding_const(params):
|
|
|
2835
2805
|
|
|
2836
2806
|
|
|
2837
2807
|
def _pre_serialize_padding_const(padding_const):
|
|
2838
|
-
obj_to_pre_serialize =
|
|
2808
|
+
obj_to_pre_serialize = padding_const
|
|
2839
2809
|
serializable_rep = obj_to_pre_serialize
|
|
2840
2810
|
|
|
2841
2811
|
return serializable_rep
|
|
@@ -2850,9 +2820,7 @@ def _de_pre_serialize_padding_const(serializable_rep):
|
|
|
2850
2820
|
|
|
2851
2821
|
|
|
2852
2822
|
def _check_and_convert_downsample_mode(params):
|
|
2853
|
-
|
|
2854
|
-
char_idx = 19
|
|
2855
|
-
obj_name = current_func_name[char_idx:]
|
|
2823
|
+
obj_name = "downsample_mode"
|
|
2856
2824
|
kwargs = {"obj": params[obj_name], "obj_name": obj_name}
|
|
2857
2825
|
downsample_mode = czekitout.convert.to_str_from_str_like(**kwargs)
|
|
2858
2826
|
|
|
@@ -2864,7 +2832,7 @@ def _check_and_convert_downsample_mode(params):
|
|
|
2864
2832
|
|
|
2865
2833
|
|
|
2866
2834
|
def _pre_serialize_downsample_mode(downsample_mode):
|
|
2867
|
-
obj_to_pre_serialize =
|
|
2835
|
+
obj_to_pre_serialize = downsample_mode
|
|
2868
2836
|
serializable_rep = obj_to_pre_serialize
|
|
2869
2837
|
|
|
2870
2838
|
return serializable_rep
|
|
@@ -3059,17 +3027,16 @@ def downsample(input_signal, optional_params=_default_optional_params):
|
|
|
3059
3027
|
|
|
3060
3028
|
"""
|
|
3061
3029
|
params = locals()
|
|
3062
|
-
params["action_to_apply_to_input_signal"] =
|
|
3030
|
+
params["action_to_apply_to_input_signal"] = "downsample"
|
|
3031
|
+
global_symbol_table = globals()
|
|
3063
3032
|
for param_name in params:
|
|
3064
3033
|
func_name = "_check_and_convert_" + param_name
|
|
3065
|
-
func_alias =
|
|
3034
|
+
func_alias = global_symbol_table[func_name]
|
|
3066
3035
|
params[param_name] = func_alias(params)
|
|
3067
3036
|
|
|
3068
|
-
func_name = "_" + inspect.stack()[0][3]
|
|
3069
|
-
func_alias = globals()[func_name]
|
|
3070
3037
|
kwargs = params
|
|
3071
3038
|
del kwargs["action_to_apply_to_input_signal"]
|
|
3072
|
-
output_signal =
|
|
3039
|
+
output_signal = _downsample(**kwargs)
|
|
3073
3040
|
|
|
3074
3041
|
return output_signal
|
|
3075
3042
|
|
|
@@ -3134,14 +3101,14 @@ def _downsample_input_signal_datasubset(input_signal_datasubset,
|
|
|
3134
3101
|
|
|
3135
3102
|
|
|
3136
3103
|
def _check_and_convert_new_signal_space_sizes(params):
|
|
3137
|
-
|
|
3138
|
-
char_idx = 19
|
|
3139
|
-
obj_name = current_func_name[char_idx:]
|
|
3104
|
+
obj_name = "new_signal_space_sizes"
|
|
3140
3105
|
obj = params[obj_name]
|
|
3141
3106
|
|
|
3142
3107
|
param_name = "input_signal"
|
|
3143
3108
|
input_signal = params.get(param_name, None)
|
|
3144
3109
|
|
|
3110
|
+
current_func_name = "_check_and_convert_new_signal_space_sizes"
|
|
3111
|
+
|
|
3145
3112
|
if obj is not None:
|
|
3146
3113
|
try:
|
|
3147
3114
|
func_alias = czekitout.convert.to_pair_of_positive_ints
|
|
@@ -3162,7 +3129,7 @@ def _check_and_convert_new_signal_space_sizes(params):
|
|
|
3162
3129
|
|
|
3163
3130
|
|
|
3164
3131
|
def _pre_serialize_new_signal_space_sizes(new_signal_space_sizes):
|
|
3165
|
-
obj_to_pre_serialize =
|
|
3132
|
+
obj_to_pre_serialize = new_signal_space_sizes
|
|
3166
3133
|
serializable_rep = obj_to_pre_serialize
|
|
3167
3134
|
|
|
3168
3135
|
return serializable_rep
|
|
@@ -3177,14 +3144,14 @@ def _de_pre_serialize_new_signal_space_sizes(serializable_rep):
|
|
|
3177
3144
|
|
|
3178
3145
|
|
|
3179
3146
|
def _check_and_convert_new_signal_space_scales(params):
|
|
3180
|
-
|
|
3181
|
-
char_idx = 19
|
|
3182
|
-
obj_name = current_func_name[char_idx:]
|
|
3147
|
+
obj_name = "new_signal_space_scales"
|
|
3183
3148
|
obj = params[obj_name]
|
|
3184
3149
|
|
|
3185
3150
|
param_name = "input_signal"
|
|
3186
3151
|
input_signal = params.get(param_name, None)
|
|
3187
3152
|
|
|
3153
|
+
current_func_name = "_check_and_convert_new_signal_space_scales"
|
|
3154
|
+
|
|
3188
3155
|
if obj is not None:
|
|
3189
3156
|
try:
|
|
3190
3157
|
func_alias = czekitout.convert.to_pair_of_floats
|
|
@@ -3209,7 +3176,7 @@ def _check_and_convert_new_signal_space_scales(params):
|
|
|
3209
3176
|
|
|
3210
3177
|
|
|
3211
3178
|
def _pre_serialize_new_signal_space_scales(new_signal_space_scales):
|
|
3212
|
-
obj_to_pre_serialize =
|
|
3179
|
+
obj_to_pre_serialize = new_signal_space_scales
|
|
3213
3180
|
serializable_rep = obj_to_pre_serialize
|
|
3214
3181
|
|
|
3215
3182
|
return serializable_rep
|
|
@@ -3224,14 +3191,14 @@ def _de_pre_serialize_new_signal_space_scales(serializable_rep):
|
|
|
3224
3191
|
|
|
3225
3192
|
|
|
3226
3193
|
def _check_and_convert_new_signal_space_offsets(params):
|
|
3227
|
-
|
|
3228
|
-
char_idx = 19
|
|
3229
|
-
obj_name = current_func_name[char_idx:]
|
|
3194
|
+
obj_name = "new_signal_space_offsets"
|
|
3230
3195
|
obj = params[obj_name]
|
|
3231
3196
|
|
|
3232
3197
|
param_name = "input_signal"
|
|
3233
3198
|
input_signal = params.get(param_name, None)
|
|
3234
3199
|
|
|
3200
|
+
current_func_name = "_check_and_convert_new_signal_space_offsets"
|
|
3201
|
+
|
|
3235
3202
|
if obj is not None:
|
|
3236
3203
|
try:
|
|
3237
3204
|
func_alias = czekitout.convert.to_pair_of_floats
|
|
@@ -3252,7 +3219,7 @@ def _check_and_convert_new_signal_space_offsets(params):
|
|
|
3252
3219
|
|
|
3253
3220
|
|
|
3254
3221
|
def _pre_serialize_new_signal_space_offsets(new_signal_space_offsets):
|
|
3255
|
-
obj_to_pre_serialize =
|
|
3222
|
+
obj_to_pre_serialize = new_signal_space_offsets
|
|
3256
3223
|
serializable_rep = obj_to_pre_serialize
|
|
3257
3224
|
|
|
3258
3225
|
return serializable_rep
|
|
@@ -3267,12 +3234,12 @@ def _de_pre_serialize_new_signal_space_offsets(serializable_rep):
|
|
|
3267
3234
|
|
|
3268
3235
|
|
|
3269
3236
|
def _check_and_convert_spline_degrees(params):
|
|
3270
|
-
|
|
3271
|
-
char_idx = 19
|
|
3272
|
-
obj_name = current_func_name[char_idx:]
|
|
3237
|
+
obj_name = "spline_degrees"
|
|
3273
3238
|
kwargs = {"obj": params[obj_name], "obj_name": obj_name}
|
|
3274
3239
|
spline_degrees = czekitout.convert.to_pair_of_positive_ints(**kwargs)
|
|
3275
3240
|
|
|
3241
|
+
current_func_name = "_check_and_convert_spline_degrees"
|
|
3242
|
+
|
|
3276
3243
|
if (spline_degrees[0] > 5) or (spline_degrees[1] > 5):
|
|
3277
3244
|
err_msg = globals()[current_func_name+"_err_msg_1"]
|
|
3278
3245
|
raise ValueError(err_msg)
|
|
@@ -3282,7 +3249,7 @@ def _check_and_convert_spline_degrees(params):
|
|
|
3282
3249
|
|
|
3283
3250
|
|
|
3284
3251
|
def _pre_serialize_spline_degrees(spline_degrees):
|
|
3285
|
-
obj_to_pre_serialize =
|
|
3252
|
+
obj_to_pre_serialize = spline_degrees
|
|
3286
3253
|
serializable_rep = obj_to_pre_serialize
|
|
3287
3254
|
|
|
3288
3255
|
return serializable_rep
|
|
@@ -3297,9 +3264,7 @@ def _de_pre_serialize_spline_degrees(serializable_rep):
|
|
|
3297
3264
|
|
|
3298
3265
|
|
|
3299
3266
|
def _check_and_convert_interpolate_polar_cmpnts(params):
|
|
3300
|
-
|
|
3301
|
-
char_idx = 19
|
|
3302
|
-
obj_name = current_func_name[char_idx:]
|
|
3267
|
+
obj_name = "interpolate_polar_cmpnts"
|
|
3303
3268
|
kwargs = {"obj": params[obj_name], "obj_name": obj_name}
|
|
3304
3269
|
interpolate_polar_cmpnts = czekitout.convert.to_bool(**kwargs)
|
|
3305
3270
|
|
|
@@ -3308,7 +3273,7 @@ def _check_and_convert_interpolate_polar_cmpnts(params):
|
|
|
3308
3273
|
|
|
3309
3274
|
|
|
3310
3275
|
def _pre_serialize_interpolate_polar_cmpnts(interpolate_polar_cmpnts):
|
|
3311
|
-
obj_to_pre_serialize =
|
|
3276
|
+
obj_to_pre_serialize = interpolate_polar_cmpnts
|
|
3312
3277
|
serializable_rep = obj_to_pre_serialize
|
|
3313
3278
|
|
|
3314
3279
|
return serializable_rep
|
|
@@ -3521,17 +3486,16 @@ def resample(input_signal, optional_params=_default_optional_params):
|
|
|
3521
3486
|
|
|
3522
3487
|
"""
|
|
3523
3488
|
params = locals()
|
|
3524
|
-
params["action_to_apply_to_input_signal"] =
|
|
3489
|
+
params["action_to_apply_to_input_signal"] = "resample"
|
|
3490
|
+
global_symbol_table = globals()
|
|
3525
3491
|
for param_name in params:
|
|
3526
3492
|
func_name = "_check_and_convert_" + param_name
|
|
3527
|
-
func_alias =
|
|
3493
|
+
func_alias = global_symbol_table[func_name]
|
|
3528
3494
|
params[param_name] = func_alias(params)
|
|
3529
3495
|
|
|
3530
|
-
func_name = "_" + inspect.stack()[0][3]
|
|
3531
|
-
func_alias = globals()[func_name]
|
|
3532
3496
|
kwargs = params
|
|
3533
3497
|
del kwargs["action_to_apply_to_input_signal"]
|
|
3534
|
-
output_signal =
|
|
3498
|
+
output_signal = _resample(**kwargs)
|
|
3535
3499
|
|
|
3536
3500
|
return output_signal
|
|
3537
3501
|
|
empix/version.py
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
|
-
Metadata-Version: 2.
|
|
1
|
+
Metadata-Version: 2.2
|
|
2
2
|
Name: empix
|
|
3
|
-
Version: 0.0.
|
|
3
|
+
Version: 0.0.2
|
|
4
4
|
Summary: Contains tools for analyzing electron microscopy data that are not available in ``hyperspy``.
|
|
5
5
|
Author-email: Matthew Fitzpatrick <matthew.rc.fitzpatrick@gmail.com>
|
|
6
6
|
Project-URL: Homepage, https://mrfitzpa.github.io/empix
|
|
@@ -25,19 +25,19 @@ Requires-Dist: czekitout
|
|
|
25
25
|
Requires-Dist: fancytypes>=1.0.0
|
|
26
26
|
Requires-Dist: hyperspy[all]
|
|
27
27
|
Requires-Dist: pyFAI
|
|
28
|
-
Provides-Extra:
|
|
29
|
-
Requires-Dist:
|
|
28
|
+
Provides-Extra: tests
|
|
29
|
+
Requires-Dist: pytest-cov; extra == "tests"
|
|
30
|
+
Provides-Extra: examples
|
|
31
|
+
Requires-Dist: jupyter; extra == "examples"
|
|
32
|
+
Requires-Dist: ipympl; extra == "examples"
|
|
30
33
|
Provides-Extra: docs
|
|
31
34
|
Requires-Dist: sphinx<7; extra == "docs"
|
|
32
|
-
Requires-Dist:
|
|
35
|
+
Requires-Dist: sphinx_rtd_theme; extra == "docs"
|
|
33
36
|
Requires-Dist: sphinx-autodoc-typehints; extra == "docs"
|
|
34
37
|
Requires-Dist: numpydoc; extra == "docs"
|
|
35
38
|
Requires-Dist: docutils; extra == "docs"
|
|
36
|
-
Provides-Extra:
|
|
37
|
-
Requires-Dist:
|
|
38
|
-
Requires-Dist: ipympl; extra == "examples"
|
|
39
|
-
Provides-Extra: tests
|
|
40
|
-
Requires-Dist: pytest-cov; extra == "tests"
|
|
39
|
+
Provides-Extra: all
|
|
40
|
+
Requires-Dist: empix[docs,examples,tests]; extra == "all"
|
|
41
41
|
|
|
42
42
|
# empix
|
|
43
43
|
|
|
@@ -52,7 +52,7 @@ Requires-Dist: pytest-cov; extra == "tests"
|
|
|
52
52
|
microscopy data that are not available in
|
|
53
53
|
[`hyperspy`](https://hyperspy.org/hyperspy-doc/current/index.html).
|
|
54
54
|
|
|
55
|
-
Visit the `empix` [website](https://mrfitzpa.
|
|
55
|
+
Visit the `empix` [website](https://mrfitzpa.github.io/empix) for a web version
|
|
56
56
|
of the installation instructions, the reference guide, and the examples archive.
|
|
57
57
|
|
|
58
58
|
<!--
|
|
@@ -0,0 +1,7 @@
|
|
|
1
|
+
empix/__init__.py,sha256=Yj_pxDlZOjk_4IPyo1ZB3qEP1paaDkSzkJ7z2p6DBt8,145721
|
|
2
|
+
empix/version.py,sha256=NDHlyIcJZjLz8wKlmD1-pr6me5FHBAYwO_ynLG-37N8,411
|
|
3
|
+
empix-0.0.2.dist-info/LICENSE,sha256=N0P3pKtRMvfb64jmgJdlerg3TnS0a2QC776AzPsbZIg,35128
|
|
4
|
+
empix-0.0.2.dist-info/METADATA,sha256=bnI1Ha9AwrCcB1Xe3pn6g_PJqlKEL1L7sNVAvi2m3PQ,3062
|
|
5
|
+
empix-0.0.2.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
|
|
6
|
+
empix-0.0.2.dist-info/top_level.txt,sha256=6tteq_gpCW5Q3p1mBQfWv4h9jSqHMOyUrpe7PEXYdso,6
|
|
7
|
+
empix-0.0.2.dist-info/RECORD,,
|
empix-0.0.1.dist-info/RECORD
DELETED
|
@@ -1,7 +0,0 @@
|
|
|
1
|
-
empix/__init__.py,sha256=cja_zG-KePl0a8J3ETC4BkT85DaZMtuBMJt0oTp4Lqc,147515
|
|
2
|
-
empix/version.py,sha256=pMnmqZnpVmaqR5nqHztNWzbbtb1oy5bPN_v7uhOH8K8,411
|
|
3
|
-
empix-0.0.1.dist-info/LICENSE,sha256=N0P3pKtRMvfb64jmgJdlerg3TnS0a2QC776AzPsbZIg,35128
|
|
4
|
-
empix-0.0.1.dist-info/METADATA,sha256=r7-1SSt0TudUNRgI1T7PWJpzqUtK3O_kGpLaq9dXz94,3062
|
|
5
|
-
empix-0.0.1.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
|
|
6
|
-
empix-0.0.1.dist-info/top_level.txt,sha256=6tteq_gpCW5Q3p1mBQfWv4h9jSqHMOyUrpe7PEXYdso,6
|
|
7
|
-
empix-0.0.1.dist-info/RECORD,,
|
|
File without changes
|
|
File without changes
|