empathy-framework 4.6.3__py3-none-any.whl → 4.6.5__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {empathy_framework-4.6.3.dist-info → empathy_framework-4.6.5.dist-info}/METADATA +53 -11
- {empathy_framework-4.6.3.dist-info → empathy_framework-4.6.5.dist-info}/RECORD +32 -57
- empathy_llm_toolkit/agent_factory/crews/health_check.py +7 -4
- empathy_llm_toolkit/agent_factory/decorators.py +3 -2
- empathy_llm_toolkit/agent_factory/memory_integration.py +6 -2
- empathy_llm_toolkit/contextual_patterns.py +5 -2
- empathy_llm_toolkit/git_pattern_extractor.py +8 -4
- empathy_llm_toolkit/providers.py +4 -3
- empathy_os/__init__.py +1 -1
- empathy_os/cli/__init__.py +306 -0
- empathy_os/cli/__main__.py +26 -0
- empathy_os/cli/commands/__init__.py +8 -0
- empathy_os/cli/commands/inspection.py +48 -0
- empathy_os/cli/commands/memory.py +56 -0
- empathy_os/cli/commands/provider.py +86 -0
- empathy_os/cli/commands/utilities.py +94 -0
- empathy_os/cli/core.py +32 -0
- empathy_os/cli.py +18 -6
- empathy_os/cli_unified.py +19 -3
- empathy_os/memory/short_term.py +12 -2
- empathy_os/project_index/scanner.py +151 -49
- empathy_os/socratic/visual_editor.py +9 -4
- empathy_os/workflows/bug_predict.py +70 -1
- empathy_os/workflows/pr_review.py +6 -0
- empathy_os/workflows/security_audit.py +13 -0
- empathy_os/workflows/tier_tracking.py +50 -2
- wizards/discharge_summary_wizard.py +4 -2
- wizards/incident_report_wizard.py +4 -2
- empathy_os/meta_workflows/agent_creator 2.py +0 -254
- empathy_os/meta_workflows/builtin_templates 2.py +0 -567
- empathy_os/meta_workflows/cli_meta_workflows 2.py +0 -1551
- empathy_os/meta_workflows/form_engine 2.py +0 -304
- empathy_os/meta_workflows/intent_detector 2.py +0 -298
- empathy_os/meta_workflows/pattern_learner 2.py +0 -754
- empathy_os/meta_workflows/session_context 2.py +0 -398
- empathy_os/meta_workflows/template_registry 2.py +0 -229
- empathy_os/meta_workflows/workflow 2.py +0 -980
- empathy_os/orchestration/pattern_learner 2.py +0 -699
- empathy_os/orchestration/real_tools 2.py +0 -938
- empathy_os/socratic/__init__ 2.py +0 -273
- empathy_os/socratic/ab_testing 2.py +0 -969
- empathy_os/socratic/blueprint 2.py +0 -532
- empathy_os/socratic/cli 2.py +0 -689
- empathy_os/socratic/collaboration 2.py +0 -1112
- empathy_os/socratic/domain_templates 2.py +0 -916
- empathy_os/socratic/embeddings 2.py +0 -734
- empathy_os/socratic/engine 2.py +0 -729
- empathy_os/socratic/explainer 2.py +0 -663
- empathy_os/socratic/feedback 2.py +0 -767
- empathy_os/socratic/forms 2.py +0 -624
- empathy_os/socratic/generator 2.py +0 -716
- empathy_os/socratic/llm_analyzer 2.py +0 -635
- empathy_os/socratic/mcp_server 2.py +0 -751
- empathy_os/socratic/session 2.py +0 -306
- empathy_os/socratic/storage 2.py +0 -635
- empathy_os/socratic/success 2.py +0 -719
- empathy_os/socratic/visual_editor 2.py +0 -812
- empathy_os/socratic/web_ui 2.py +0 -925
- empathy_os/workflows/batch_processing 2.py +0 -310
- empathy_os/workflows/release_prep_crew 2.py +0 -968
- empathy_os/workflows/test_coverage_boost_crew 2.py +0 -848
- {empathy_framework-4.6.3.dist-info → empathy_framework-4.6.5.dist-info}/WHEEL +0 -0
- {empathy_framework-4.6.3.dist-info → empathy_framework-4.6.5.dist-info}/entry_points.txt +0 -0
- {empathy_framework-4.6.3.dist-info → empathy_framework-4.6.5.dist-info}/licenses/LICENSE +0 -0
- {empathy_framework-4.6.3.dist-info → empathy_framework-4.6.5.dist-info}/top_level.txt +0 -0
empathy_os/cli_unified.py
CHANGED
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@@ -441,11 +441,24 @@ def workflow_list():
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@workflow_app.command("run")
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def workflow_run(
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name: str = typer.Argument(..., help="Workflow name"),
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path: Path = Path("."),
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path: Path = typer.Option(Path("."), "--path", "-p", help="Target path for workflow"),
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input_json: str = typer.Option(None, "--input", "-i", help="JSON input for workflow (overrides --path)"),
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use_recommended_tier: bool = False,
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health_score_threshold: int = 95,
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json_output: bool = typer.Option(False, "--json", help="Output as JSON"),
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):
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"""Run a multi-model workflow.
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"""Run a multi-model workflow.
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Examples:
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empathy workflow run code-review --path ./src
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empathy workflow run test-gen --input '{"path": ".", "file_types": [".py"]}'
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"""
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# Determine input JSON - explicit --input takes precedence over --path
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if input_json:
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workflow_input = input_json
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else:
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workflow_input = f'{{"path": "{path}"}}'
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cmd = [
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sys.executable,
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"-m",
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"run",
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name,
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"--input",
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workflow_input,
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if use_recommended_tier:
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if health_score_threshold != 95:
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cmd.extend(["--health-score-threshold", str(health_score_threshold)])
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if json_output:
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cmd.append("--json")
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subprocess.run(cmd, check=False)
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empathy_os/memory/short_term.py
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# Convert back to original type
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try:
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return json.loads(sanitized_str), pii_count
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except json.JSONDecodeError:
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# If PII scrubbing broke JSON structure, return original
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# This can happen if regex matches part of JSON syntax
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logger.warning("pii_scrubbing_broke_json_returning_original")
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return data, 0
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elif isinstance(data, list):
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try:
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return json.loads(sanitized_str), pii_count
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except json.JSONDecodeError:
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logger.warning("pii_scrubbing_broke_json_returning_original")
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return data, 0
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return sanitized_str, pii_count
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import hashlib
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import heapq
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import os
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import re
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from datetime import datetime
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from functools import lru_cache
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from pathlib import Path
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self.project_root = Path(project_root)
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self.config = config or IndexConfig()
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self._test_file_map: dict[str, str] = {} # source -> test mapping
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# Pre-compile glob patterns for O(1) matching (vs recompiling on every call)
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# This optimization reduces _matches_glob_pattern() time by ~70%
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self._compiled_patterns: dict[str, tuple[re.Pattern, str | None]] = {}
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self._compile_glob_patterns()
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def _compile_glob_patterns(self) -> None:
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"""Pre-compile glob patterns for faster matching.
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Called once at init to avoid recompiling patterns on every file check.
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Profiling showed fnmatch.fnmatch() called 823,433 times - this optimization
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reduces that overhead by ~70% by using pre-compiled regex patterns.
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"""
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for pattern in all_patterns:
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if pattern in self._compiled_patterns:
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continue
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# Extract directory name for ** patterns
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dir_name = None
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if pattern.startswith("**/") and pattern.endswith("/**"):
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dir_name = pattern[3:-3] # e.g., "**/node_modules/**" -> "node_modules"
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elif pattern.endswith("/**"):
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dir_name = pattern.replace("**/", "").replace("/**", "")
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try:
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return files
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~800K+ times during a full scan, so caching the compiled patterns
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provides significant speedup.
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"""
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"""
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def _analyze_dependencies(self, records: list[FileRecord]) -> None:
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Optimized from O(n³) to O(n*m) where n=records, m=avg imports per file.
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"""
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# Build record lookup by path for O(1) access (eliminates innermost loop)
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records_by_path: dict[str, FileRecord] = {r.path: r for r in records}
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# Key: module name or suffix -> Value: path
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module_to_path: dict[str, str] = {}
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module_suffix_to_path: dict[str, str] = {} # For "endswith" matching
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for record in records:
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if record.language == "python":
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-
# Convert path to module name
|
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-
module_name = record.path.replace("/", ".").replace("\\", ".")
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# Convert path to module name: src/empathy_os/core.py -> src.empathy_os.core
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module_name = record.path.replace("/", ".").replace("\\", ".")
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if module_name.endswith(".py"):
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module_name = module_name[:-3]
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# Also index by module suffix parts for partial matching
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# e.g., "empathy_os.core" and "core" for "src.empathy_os.core"
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parts = module_name.split(".")
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module_suffix_to_path[suffix] = record.path
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# Track which records have been updated (for imported_by deduplication)
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# Update imported_by relationships with O(1) lookups
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#
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break
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if record.path not in imported_by_sets[target_path]:
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def _calculate_impact_scores(self, records: list[FileRecord]) -> None:
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"""Calculate impact score for each file."""
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@@ -329,6 +329,7 @@ class WorkflowVisualizer:
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new_stages.append(StageSpec(
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id=stage_node.node_id,
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name=stage_node.label,
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|
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@@ -383,10 +384,14 @@ class ASCIIVisualizer:
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|
# Agents summary
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lines.append(self._box("Agents"))
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for agent in blueprint.agents:
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-
tools
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-
if
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-
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# Access tools via spec since AgentBlueprint wraps AgentSpec
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+
agent_tools = agent.spec.tools if hasattr(agent, "spec") else []
|
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+
tools = ", ".join(t.id for t in agent_tools[:3])
|
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|
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if len(agent_tools) > 3:
|
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tools += f" (+{len(agent_tools) - 3} more)"
|
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+
agent_role = agent.spec.role if hasattr(agent, "spec") else agent.role
|
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+
agent_name = agent.spec.name if hasattr(agent, "spec") else agent.name
|
|
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|
+
lines.append(f" [{agent_role.value[:3].upper()}] {agent_name}")
|
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395
|
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|
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@@ -235,6 +235,8 @@ def _is_dangerous_eval_usage(content: str, file_path: str) -> bool:
|
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235
235
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- Pattern definitions for security scanners
|
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- Test fixtures: code written via write_text() or similar for testing
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|
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- Scanner test files that deliberately contain example bad patterns
|
|
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+
- Docstrings documenting security policies (e.g., "No eval() or exec() usage")
|
|
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|
+
- Security policy documentation in comments
|
|
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240
|
|
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239
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|
Returns:
|
|
240
242
|
True if dangerous eval/exec usage is found, False otherwise.
|
|
@@ -292,14 +294,22 @@ def _is_dangerous_eval_usage(content: str, file_path: str) -> bool:
|
|
|
292
294
|
if "eval(" not in content_without_regex_exec and "exec(" not in content_without_regex_exec:
|
|
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295
|
return False
|
|
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|
|
|
297
|
+
# Remove docstrings before line-by-line analysis
|
|
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|
+
# This prevents false positives from documentation that mentions eval/exec
|
|
299
|
+
content_without_docstrings = _remove_docstrings(content)
|
|
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|
+
|
|
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|
# Check each line for real dangerous usage
|
|
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|
-
lines =
|
|
302
|
+
lines = content_without_docstrings.splitlines()
|
|
297
303
|
for line in lines:
|
|
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304
|
# Skip comment lines
|
|
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305
|
stripped = line.strip()
|
|
300
306
|
if stripped.startswith("#") or stripped.startswith("//") or stripped.startswith("*"):
|
|
301
307
|
continue
|
|
302
308
|
|
|
309
|
+
# Skip security policy documentation (e.g., "- No eval() or exec()")
|
|
310
|
+
if _is_security_policy_line(stripped):
|
|
311
|
+
continue
|
|
312
|
+
|
|
303
313
|
# Check for eval( or exec( in this line
|
|
304
314
|
if "eval(" not in line and "exec(" not in line:
|
|
305
315
|
continue
|
|
@@ -348,6 +358,65 @@ def _is_dangerous_eval_usage(content: str, file_path: str) -> bool:
|
|
|
348
358
|
return False
|
|
349
359
|
|
|
350
360
|
|
|
361
|
+
def _remove_docstrings(content: str) -> str:
|
|
362
|
+
"""Remove docstrings from Python content to avoid false positives.
|
|
363
|
+
|
|
364
|
+
Docstrings often document security policies (e.g., "No eval() usage")
|
|
365
|
+
which should not trigger the scanner.
|
|
366
|
+
|
|
367
|
+
Args:
|
|
368
|
+
content: Python source code
|
|
369
|
+
|
|
370
|
+
Returns:
|
|
371
|
+
Content with docstrings replaced by placeholder comments.
|
|
372
|
+
"""
|
|
373
|
+
# Remove triple-quoted strings (docstrings)
|
|
374
|
+
# Match """ ... """ and ''' ... ''' including multiline
|
|
375
|
+
content = re.sub(r'"""[\s\S]*?"""', '# [docstring removed]', content)
|
|
376
|
+
content = re.sub(r"'''[\s\S]*?'''", "# [docstring removed]", content)
|
|
377
|
+
return content
|
|
378
|
+
|
|
379
|
+
|
|
380
|
+
def _is_security_policy_line(line: str) -> bool:
|
|
381
|
+
"""Check if a line is documenting security policy rather than using eval/exec.
|
|
382
|
+
|
|
383
|
+
Args:
|
|
384
|
+
line: Stripped line of code
|
|
385
|
+
|
|
386
|
+
Returns:
|
|
387
|
+
True if this appears to be security documentation.
|
|
388
|
+
"""
|
|
389
|
+
line_lower = line.lower()
|
|
390
|
+
|
|
391
|
+
# Patterns indicating security policy documentation
|
|
392
|
+
policy_patterns = [
|
|
393
|
+
r"no\s+eval", # "No eval" or "no eval()"
|
|
394
|
+
r"no\s+exec", # "No exec" or "no exec()"
|
|
395
|
+
r"never\s+use\s+eval",
|
|
396
|
+
r"never\s+use\s+exec",
|
|
397
|
+
r"avoid\s+eval",
|
|
398
|
+
r"avoid\s+exec",
|
|
399
|
+
r"don'?t\s+use\s+eval",
|
|
400
|
+
r"don'?t\s+use\s+exec",
|
|
401
|
+
r"prohibited.*eval",
|
|
402
|
+
r"prohibited.*exec",
|
|
403
|
+
r"security.*eval",
|
|
404
|
+
r"security.*exec",
|
|
405
|
+
]
|
|
406
|
+
|
|
407
|
+
for pattern in policy_patterns:
|
|
408
|
+
if re.search(pattern, line_lower):
|
|
409
|
+
return True
|
|
410
|
+
|
|
411
|
+
# Check for list item documentation (e.g., "- No eval() or exec() usage")
|
|
412
|
+
if line.startswith("-") and ("eval" in line_lower or "exec" in line_lower):
|
|
413
|
+
# If it contains "no", "never", "avoid", it's policy documentation
|
|
414
|
+
if any(word in line_lower for word in ["no ", "never", "avoid", "don't", "prohibited"]):
|
|
415
|
+
return True
|
|
416
|
+
|
|
417
|
+
return False
|
|
418
|
+
|
|
419
|
+
|
|
351
420
|
# Define step configurations for executor-based execution
|
|
352
421
|
BUG_PREDICT_STEPS = {
|
|
353
422
|
"recommend": WorkflowStepConfig(
|
|
@@ -126,6 +126,7 @@ class PRReviewWorkflow:
|
|
|
126
126
|
diff: str | None = None,
|
|
127
127
|
files_changed: list[str] | None = None,
|
|
128
128
|
target_path: str = ".",
|
|
129
|
+
target: str | None = None, # Alias for target_path (compatibility)
|
|
129
130
|
context: dict | None = None,
|
|
130
131
|
) -> PRReviewResult:
|
|
131
132
|
"""Execute comprehensive PR review with both crews.
|
|
@@ -134,6 +135,7 @@ class PRReviewWorkflow:
|
|
|
134
135
|
diff: PR diff content (auto-generated from git if not provided)
|
|
135
136
|
files_changed: List of changed files
|
|
136
137
|
target_path: Path to codebase for security audit
|
|
138
|
+
target: Alias for target_path (for CLI compatibility)
|
|
137
139
|
context: Additional context
|
|
138
140
|
|
|
139
141
|
Returns:
|
|
@@ -144,6 +146,10 @@ class PRReviewWorkflow:
|
|
|
144
146
|
files_changed = files_changed or []
|
|
145
147
|
context = context or {}
|
|
146
148
|
|
|
149
|
+
# Support 'target' as alias for 'target_path'
|
|
150
|
+
if target and target_path == ".":
|
|
151
|
+
target_path = target
|
|
152
|
+
|
|
147
153
|
# Auto-generate diff from git if not provided
|
|
148
154
|
if not diff:
|
|
149
155
|
import subprocess
|
|
@@ -102,6 +102,19 @@ SECURITY_EXAMPLE_PATHS = [
|
|
|
102
102
|
"pii_scrubber.py", # Privacy tool
|
|
103
103
|
"secure_memdocs", # Secure storage module
|
|
104
104
|
"/security/", # Security modules
|
|
105
|
+
"/benchmarks/", # Benchmark files with test fixtures
|
|
106
|
+
"benchmark_", # Benchmark files (e.g., benchmark_caching.py)
|
|
107
|
+
"phase_2_setup.py", # Setup file with educational patterns
|
|
108
|
+
]
|
|
109
|
+
|
|
110
|
+
# Patterns indicating test fixture data (code written to temp files for testing)
|
|
111
|
+
TEST_FIXTURE_PATTERNS = [
|
|
112
|
+
r"SECURITY_TEST_FILES\s*=", # Dict of test fixture code
|
|
113
|
+
r"write_text\s*\(", # Writing test data to temp files
|
|
114
|
+
r"# UNSAFE - DO NOT USE", # Educational comments showing bad patterns
|
|
115
|
+
r"# SAFE -", # Educational comments showing good patterns
|
|
116
|
+
r"# INJECTION RISK", # Educational markers
|
|
117
|
+
r"pragma:\s*allowlist\s*secret", # Explicit allowlist marker
|
|
105
118
|
]
|
|
106
119
|
|
|
107
120
|
# Test file patterns - findings here are informational, not critical
|
|
@@ -86,6 +86,11 @@ class WorkflowTierTracker:
|
|
|
86
86
|
"premium": 0.450,
|
|
87
87
|
}
|
|
88
88
|
|
|
89
|
+
# Retention policy: keep only this many workflow files
|
|
90
|
+
MAX_WORKFLOW_FILES = 100
|
|
91
|
+
# Only run cleanup every N saves to avoid overhead
|
|
92
|
+
CLEANUP_FREQUENCY = 10
|
|
93
|
+
|
|
89
94
|
def __init__(
|
|
90
95
|
self,
|
|
91
96
|
workflow_name: str,
|
|
@@ -302,6 +307,11 @@ class WorkflowTierTracker:
|
|
|
302
307
|
# Also update consolidated patterns file
|
|
303
308
|
self._update_consolidated_patterns(progression)
|
|
304
309
|
|
|
310
|
+
# Periodic cleanup of old workflow files (every CLEANUP_FREQUENCY saves)
|
|
311
|
+
workflow_count = len(list(self.patterns_dir.glob("workflow_*.json")))
|
|
312
|
+
if workflow_count > self.MAX_WORKFLOW_FILES + self.CLEANUP_FREQUENCY:
|
|
313
|
+
self._cleanup_old_workflow_files()
|
|
314
|
+
|
|
305
315
|
return pattern_file
|
|
306
316
|
|
|
307
317
|
except Exception as e:
|
|
@@ -439,7 +449,7 @@ class WorkflowTierTracker:
|
|
|
439
449
|
return actual_cost * 5 # Conservative multiplier
|
|
440
450
|
|
|
441
451
|
def _update_consolidated_patterns(self, progression: dict[str, Any]):
|
|
442
|
-
"""Update the consolidated patterns.json file."""
|
|
452
|
+
"""Update the consolidated patterns.json file with retention policy."""
|
|
443
453
|
consolidated_file = self.patterns_dir / "all_patterns.json"
|
|
444
454
|
|
|
445
455
|
try:
|
|
@@ -454,13 +464,51 @@ class WorkflowTierTracker:
|
|
|
454
464
|
# Add new progression
|
|
455
465
|
data["patterns"].append(progression)
|
|
456
466
|
|
|
467
|
+
# Apply retention policy: keep only MAX_WORKFLOW_FILES patterns
|
|
468
|
+
if len(data["patterns"]) > self.MAX_WORKFLOW_FILES:
|
|
469
|
+
data["patterns"] = data["patterns"][-self.MAX_WORKFLOW_FILES :]
|
|
470
|
+
|
|
457
471
|
# Save updated file
|
|
458
472
|
validated_consolidated = _validate_file_path(str(consolidated_file))
|
|
459
473
|
with open(validated_consolidated, "w") as f:
|
|
460
474
|
json.dump(data, f, indent=2)
|
|
461
475
|
|
|
462
|
-
except (OSError, ValueError) as e:
|
|
476
|
+
except (OSError, ValueError, json.JSONDecodeError) as e:
|
|
463
477
|
logger.warning(f"Could not update consolidated patterns: {e}")
|
|
478
|
+
# If file is corrupted, start fresh
|
|
479
|
+
try:
|
|
480
|
+
data = {"patterns": [progression]}
|
|
481
|
+
validated_consolidated = _validate_file_path(str(consolidated_file))
|
|
482
|
+
with open(validated_consolidated, "w") as f:
|
|
483
|
+
json.dump(data, f, indent=2)
|
|
484
|
+
logger.info("Recreated consolidated patterns file")
|
|
485
|
+
except (OSError, ValueError) as e2:
|
|
486
|
+
logger.warning(f"Could not recreate consolidated patterns: {e2}")
|
|
487
|
+
|
|
488
|
+
def _cleanup_old_workflow_files(self):
|
|
489
|
+
"""Remove old workflow files to prevent unbounded growth.
|
|
490
|
+
|
|
491
|
+
Called periodically during save_progression to keep disk usage bounded.
|
|
492
|
+
Keeps only the most recent MAX_WORKFLOW_FILES workflow files.
|
|
493
|
+
"""
|
|
494
|
+
try:
|
|
495
|
+
workflow_files = sorted(
|
|
496
|
+
self.patterns_dir.glob("workflow_*.json"),
|
|
497
|
+
key=lambda p: p.stat().st_mtime,
|
|
498
|
+
reverse=True,
|
|
499
|
+
)
|
|
500
|
+
|
|
501
|
+
# Delete files beyond retention limit
|
|
502
|
+
files_to_delete = workflow_files[self.MAX_WORKFLOW_FILES :]
|
|
503
|
+
if files_to_delete:
|
|
504
|
+
for f in files_to_delete:
|
|
505
|
+
try:
|
|
506
|
+
f.unlink()
|
|
507
|
+
except OSError:
|
|
508
|
+
pass # Best effort cleanup
|
|
509
|
+
logger.debug(f"Cleaned up {len(files_to_delete)} old workflow files")
|
|
510
|
+
except OSError as e:
|
|
511
|
+
logger.debug(f"Workflow file cleanup skipped: {e}")
|
|
464
512
|
|
|
465
513
|
|
|
466
514
|
def auto_recommend_tier(
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@@ -157,7 +157,8 @@ async def _store_wizard_session(wizard_id: str, session_data: dict[str, Any]) ->
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json.dumps(session_data), # FIXED: use JSON
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)
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return True
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-
except Exception:
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+
except Exception: # noqa: BLE001
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+
# INTENTIONAL: Graceful degradation - fall back to in-memory storage if Redis fails
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pass
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_wizard_sessions[wizard_id] = session_data
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return True
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@@ -174,7 +175,8 @@ async def _get_wizard_session(wizard_id: str) -> dict[str, Any] | None:
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if session_str:
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# SECURITY FIX: Use json.loads() instead of ast.literal_eval()
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return json.loads(session_str)
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-
except Exception:
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+
except Exception: # noqa: BLE001
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+
# INTENTIONAL: Graceful degradation - fall back to in-memory storage if Redis fails
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pass
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return _wizard_sessions.get(wizard_id)
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@@ -143,7 +143,8 @@ async def _store_wizard_session(wizard_id: str, session_data: dict[str, Any]) ->
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json.dumps(session_data), # FIXED: use JSON
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)
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return True
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-
except Exception:
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+
except Exception: # noqa: BLE001
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+
# INTENTIONAL: Graceful degradation - fall back to in-memory storage if Redis fails
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pass
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_wizard_sessions[wizard_id] = session_data
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return True
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@@ -160,7 +161,8 @@ async def _get_wizard_session(wizard_id: str) -> dict[str, Any] | None:
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if session_str:
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# SECURITY FIX: Use json.loads() instead of ast.literal_eval()
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return json.loads(session_str)
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-
except Exception:
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+
except Exception: # noqa: BLE001
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+
# INTENTIONAL: Graceful degradation - fall back to in-memory storage if Redis fails
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pass
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return _wizard_sessions.get(wizard_id)
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