emerge 0.4.9__py3-none-any.whl → 0.4.10__py3-none-any.whl

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Potentially problematic release.


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emerge/_emerge/mesh3d.py CHANGED
@@ -87,6 +87,8 @@ class Mesh3D:
87
87
 
88
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  self.geometry: Mesher = mesher
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89
 
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+ self.exterior_face_tags: list[int] = None
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+
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  # All spatial objects
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  self.nodes: np.ndarray = None
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  self.n_i2t: dict = None
@@ -46,6 +46,13 @@ class MWBoundaryConditionSet(BoundaryConditionSet):
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46
 
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  self._cell: PeriodicCell = None
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48
 
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+ def get_type(self, bctype: Literal['PEC','ModalPort','LumpedPort','PMC','LumpedElement','RectangularWaveguide','Periodic','FloquetPort']) -> FaceSelection:
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+ tags = []
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+ for bc in self.boundary_conditions:
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+ if bctype in str(bc.__class__):
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+ tags.extend(bc.selection.tags)
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+ return FaceSelection(tags)
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+
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  def floquet_port(self, poly: GeoSurface, port_number: int) -> FloquetPort:
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  if self._cell is None:
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  raise ValueError('Periodic cel must be defined for this simulation.')
@@ -874,6 +874,32 @@ class MWField:
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874
 
875
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  return Eff, Hff
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876
 
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+ def optycal(self, faces: FaceSelection | GeoSurface = None) -> tuple:
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+ """Export this models exterior to an Optical acceptable dataset
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+
880
+ Args:
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+ faces (FaceSelection | GeoSurface): The faces to export. Defaults to None
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+
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+ Returns:
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+ tuple: _description_
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+ """
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+ if faces is None:
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+ tags = self.mesh.exterior_face_tags
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+ else:
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+ tags = faces.tags
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+
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+ surface = self.basis.mesh.boundary_surface(tags, None)
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+ field = self.interpolate(*surface.exyz)
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+ vertices = surface.nodes
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+ triangles = surface.tris
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+ print(surface._origin, surface._alignment_origin)
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+ origin = surface._origin
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+ E = field.E
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+ H = field.H
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+ k0 = self.k0
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+ return vertices, triangles, E, H, origin, k0
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+
902
+
877
903
  class MWScalar:
878
904
  """The MWDataSet class stores solution data of FEM Time Harmonic simulations.
879
905
  """
@@ -400,6 +400,7 @@ def plot_ff(
400
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  theta: np.ndarray,
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  E: Union[np.ndarray, Sequence[np.ndarray]],
402
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  grid: bool = True,
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+ dB: bool = False,
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  labels: Optional[List[str]] = None,
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  xlabel: str = "Theta (rad)",
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  ylabel: str = "|E|",
@@ -453,6 +454,8 @@ def plot_ff(
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  fig, ax = plt.subplots()
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  for i, Ei in enumerate(E_list):
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  mag = np.abs(Ei)
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+ if dB:
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+ mag = 20*np.log10(mag)
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  ax.plot(
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  theta, mag,
458
461
  linestyle=linestyles[i],
@@ -277,8 +277,6 @@ class Simulation3D:
277
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  if not self._defined_geometries:
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  self.define_geometry()
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279
 
280
-
281
-
282
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  # Check if frequencies are defined: TODO: Replace with a more generic check
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  if self.mw.frequencies is None:
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  raise ValueError('No frequencies defined for the simulation. Please set frequencies before generating the mesh.')
@@ -296,6 +294,7 @@ class Simulation3D:
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  raise
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295
 
298
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  self.mesh.update(self.mesher._get_periodic_bcs())
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+ self.mesh.exterior_face_tags = self.mesher.domain_boundary_face_tags
299
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  gmsh.model.occ.synchronize()
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  self.set_mesh(self.mesh)
301
300
 
emerge/_emerge/solver.py CHANGED
@@ -392,7 +392,7 @@ class SolverUMFPACK(Solver):
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  super().__init__()
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  self.A: np.ndarray = None
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  self.b: np.ndarray = None
395
- self.up: um.UmfpackContext = um.UmfpackContext('zi')
395
+ self.up: um.UmfpackContext = um.UmfpackContext('zl')
396
396
  self.up.control[um.UMFPACK_PRL] = 0 #less terminal printing
397
397
  self.up.control[um.UMFPACK_IRSTEP] = 2
398
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  self.up.control[um.UMFPACK_STRATEGY] = um.UMFPACK_STRATEGY_SYMMETRIC
@@ -401,6 +401,7 @@ class SolverUMFPACK(Solver):
401
401
  self.up.control[um.UMFPACK_SYM_PIVOT_TOLERANCE] = 0.001
402
402
  self.up.control[um.UMFPACK_BLOCK_SIZE] = 64
403
403
  self.up.control[um.UMFPACK_FIXQ] = -1
404
+ #self.up.control[um.UMFPACK_]
404
405
 
405
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  self.fact_symb: bool = False
406
407
 
@@ -409,6 +410,8 @@ class SolverUMFPACK(Solver):
409
410
 
410
411
  def solve(self, A, b, precon, reuse_factorization: bool = False, id: int = -1):
411
412
  logger.info(f'Calling UMFPACK Solver. ID={id}')
413
+ A.indptr = A.indptr.astype(np.int64)
414
+ A.indices = A.indices.astype(np.int64)
412
415
  if self.fact_symb is False:
413
416
  logger.debug('Executing symbollic factorization.')
414
417
  self.up.symbolic(A)
@@ -647,6 +650,7 @@ class SolveRoutine:
647
650
  self.parallel: Literal['SI','MT','MP'] = 'SI'
648
651
  self.smart_search: bool = False
649
652
  self.forced_solver: list[Solver] = []
653
+ self.disabled_solver: list[Solver] = []
650
654
 
651
655
  self.use_sorter: bool = False
652
656
  self.use_preconditioner: bool = False
@@ -655,6 +659,49 @@ class SolveRoutine:
655
659
  def __str__(self) -> str:
656
660
  return f'SolveRoutine({self.sorter},{self.precon},{self.iterative_solver}, {self.direct_solver})'
657
661
 
662
+ def _legal_solver(self, solver: Solver) -> bool:
663
+ """Checks if a solver is a legal option.
664
+
665
+ Args:
666
+ solver (Solver): The solver to test against
667
+
668
+ Returns:
669
+ bool: If the solver is legal
670
+ """
671
+ if any(isinstance(solver, solvertype) for solvertype in self.disabled_solver):
672
+ return False
673
+ return True
674
+
675
+ @property
676
+ def all_solvers(self) -> list[Solver]:
677
+ return list([solver for solver in self.solvers.values() if not isinstance(solver, EigSolver)])
678
+
679
+ @property
680
+ def all_eig_solvers(self) -> list[Solver]:
681
+ return list([solver for solver in self.solvers.values() if isinstance(solver, EigSolver)])
682
+
683
+
684
+ def _try_solver(self, solver_type: EMSolver) -> Solver:
685
+ """Try to use the selected solver or else find another one that is working.
686
+
687
+ Args:
688
+ solver_type (EMSolver): The solver type to try
689
+
690
+ Raises:
691
+ RuntimeError: Error if no valid solver is found.
692
+
693
+ Returns:
694
+ Solver: The working solver.
695
+ """
696
+ solver = self.solvers[solver_type]
697
+ if self._legal_solver(solver):
698
+ return solver
699
+ for alternative in self.all_solvers:
700
+ if self._legal_solver(alternative):
701
+ logger.debug(f'Falling back on legal solver: {alternative}')
702
+ return alternative
703
+ raise RuntimeError(f'No legal solver could be found. The following are disabled: {self.disabled_solver}')
704
+
658
705
  def duplicate(self) -> SolveRoutine:
659
706
  """Creates a copy of this SolveRoutine class object.
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707
 
@@ -667,17 +714,30 @@ class SolveRoutine:
667
714
  new_routine.forced_solver = self.forced_solver
668
715
  return new_routine
669
716
 
670
- def set_solver(self, *solver: EMSolver | EigSolver | Solver) -> None:
717
+ def set_solver(self, *solvers: EMSolver | EigSolver | Solver) -> None:
671
718
  """Set a given Solver class instance as the main solver. Solvers will be checked on validity for the given problem.
672
719
 
673
720
  Args:
674
721
  solver (EMSolver | Solver): The solver objects
675
722
  """
676
- if isinstance(solver, EMSolver):
677
- self.forced_solver.append(solver.get_solver())
678
- else:
679
- self.forced_solver.append(solver)
680
-
723
+ for solver in solvers:
724
+ if isinstance(solver, EMSolver):
725
+ self.forced_solver.append(solver.get_solver())
726
+ else:
727
+ self.forced_solver.append(solver)
728
+
729
+ def disable(self, *solvers: EMSolver) -> None:
730
+ """Disable a given Solver class instance as the main solver. Solvers will be checked on validity for the given problem.
731
+
732
+ Args:
733
+ solver (EMSolver): The solver objects
734
+ """
735
+ for solver in solvers:
736
+ if isinstance(solver, EMSolver):
737
+ self.disabled_solver.append(solver.get_solver().__class__)
738
+ else:
739
+ self.disabled_solver.append(solver.__class__)
740
+
681
741
  def configure(self,
682
742
  parallel: Literal['SI','MT','MP'] = 'SI', smart_search: bool = False) -> SolveRoutine:
683
743
  """Configure the solver with the given settings
@@ -705,6 +765,7 @@ class SolveRoutine:
705
765
  self.parallel: Literal['SI','MT','MP'] = 'SI'
706
766
  self.smart_search: bool = False
707
767
  self.forced_solver = []
768
+ self.disabled_solver: list[Solver] = []
708
769
 
709
770
  def _get_solver(self, A: lil_matrix, b: np.ndarray) -> Solver:
710
771
  """Returns the relevant Solver object given a certain matrix and source vector
@@ -720,6 +781,8 @@ class SolveRoutine:
720
781
 
721
782
  """
722
783
  for solver in self.forced_solver:
784
+ if not self._legal_solver(solver):
785
+ continue
723
786
  if isinstance(solver, Solver):
724
787
  return solver
725
788
  return self.pick_solver(A,b)
@@ -738,7 +801,7 @@ class SolveRoutine:
738
801
  Solver: Returns the direct solver
739
802
 
740
803
  """
741
- return self.solvers[EMSolver.SUPERLU]
804
+ return self._try_solver(EMSolver.SUPERLU)
742
805
 
743
806
  def _get_eig_solver(self, A: lil_matrix, b: lil_matrix, direct: bool = None) -> Solver:
744
807
  """Returns the relevant eigenmode Solver object given a certain matrix and source vector
@@ -973,21 +1036,21 @@ class AutomaticRoutine(SolveRoutine):
973
1036
  """
974
1037
  N = b.shape[0]
975
1038
  if N < 10_000:
976
- return self.solvers[EMSolver.SUPERLU]
1039
+ return self._try_solver(EMSolver.SUPERLU)
977
1040
  if self.parallel=='SI':
978
1041
  if _PARDISO_AVAILABLE:
979
- return self.solvers[EMSolver.PARDISO]
1042
+ return self._try_solver(EMSolver.PARDISO)
980
1043
  elif _UMFPACK_AVAILABLE:
981
- return self.solvers[EMSolver.UMFPACK]
1044
+ return self._try_solver(EMSolver.UMFPACK)
982
1045
  else:
983
- return self.solvers[EMSolver.SUPERLU]
1046
+ return self._try_solver(EMSolver.SUPERLU)
984
1047
  elif self.parallel=='MP':
985
1048
  if _UMFPACK_AVAILABLE:
986
- return self.solvers[EMSolver.UMFPACK]
1049
+ return self._try_solver(EMSolver.UMFPACK)
987
1050
  else:
988
- return self.solvers[EMSolver.SUPERLU]
1051
+ return self._try_solver(EMSolver.SUPERLU)
989
1052
  elif self.parallel=='MT':
990
- return self.solvers[EMSolver.SUPERLU]
991
- return self.solvers[EMSolver.SUPERLU]
1053
+ return self._try_solver(EMSolver.SUPERLU)
1054
+ return self._try_solver(EMSolver.SUPERLU)
992
1055
 
993
1056
  DEFAULT_ROUTINE = AutomaticRoutine()
@@ -1,9 +1,10 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: emerge
3
- Version: 0.4.9
3
+ Version: 0.4.10
4
4
  Summary: An open source EM FEM simulator in Python
5
5
  Project-URL: Homepage, https://github.com/FennisRobert/EMerge
6
6
  Project-URL: Issues, https://github.com/FennisRobert/EMerge/issues
7
+ License-File: LICENSE
7
8
  Requires-Python: <4.0,>=3.10
8
9
  Requires-Dist: gmsh>=4.13.1
9
10
  Requires-Dist: joblib>=1.5.1
@@ -31,14 +32,25 @@ If you have suggestions/changes/questions either use the Github issue system or
31
32
 
32
33
  ## How to install
33
34
 
34
- Clone this repository or download the files. While in the EMerge path containing the src/emerge folder, install the module using:
35
+ You can now install the basic version of emerge from PyPi!
35
36
  ```
36
- pip install .
37
+ pip install emerge
37
38
  ```
38
39
  If you want to install the library with PyPardiso on Intel machines, you can install the optional dependency with EMerge using:
39
40
  ```
40
- pip install ".[pypardiso]"
41
+ pip install emerge[pypardiso]
41
42
  ```
43
+ On MacOS and Linux you can install it with the very fast UMFPACK through scikit-umfpack
44
+
45
+ ```
46
+ pip install emerge[scikit-umfpack]
47
+ ```
48
+ On linux and MacOS with intel or AMD chips you can also include both:
49
+
50
+ ```
51
+ pip install emerge[scikit-umfpack, pypardiso]
52
+ ```
53
+ The `scikit-umfpack` solver can be installed on Windows as well from binaries with conda. This is a bit more complicated and is described in the installation guide.
42
54
 
43
55
  ## Compatibility
44
56
 
@@ -54,7 +66,7 @@ def main():
54
66
  if __name__ == "__main__":
55
67
  main()
56
68
  ```
57
- Otherwise, the parallel solver will default to SuperLU which is significantly slower on larger problems.
69
+ Otherwise, the parallel solver will default to SuperLU which can be slower on larger problems with a very densely connected/compact matrix.
58
70
 
59
71
  ## Required libraries
60
72
 
@@ -62,13 +74,15 @@ To run this FEM library you need the following libraries
62
74
 
63
75
  - numpy
64
76
  - scipy
65
- - pypardiso
66
77
  - gmsh
67
78
  - loguru
68
79
  - numba
69
80
  - matplotlib (for the matplotlib base display)
70
81
  - pyvista (for the PyVista base display)
71
82
  - numba-progress
83
+
84
+ Optional:
85
+ - pypardiso
72
86
  - scikit-umfpack
73
87
 
74
88
  ## NOTICE
@@ -14,14 +14,14 @@ emerge/_emerge/geometry.py,sha256=gWLdmkP4Sb-OHinCSuXiNw1BV7hQ8_zmo0PrcfEJXEA,16
14
14
  emerge/_emerge/howto.py,sha256=63AwiLbBN0aou12qDOhWuPk7GiBmDySixv5xmRzctV8,8208
15
15
  emerge/_emerge/logsettings.py,sha256=eq0hIikrtx4TLFx3W1qlV5CpcH2JRForQb9fi6eXXGI,144
16
16
  emerge/_emerge/material.py,sha256=8c3bEov76xqpH1w9s3ZGZ47EuofUNjVeI_IO4RG15Rk,3879
17
- emerge/_emerge/mesh3d.py,sha256=yOiVHkZRHY0gnXTv5g0V0MsSgyuWC31RxcN_VqfCfXg,29815
17
+ emerge/_emerge/mesh3d.py,sha256=bHy3YxshTFDmzb816udcF0NfKClCHucSx7YAyfMu9cQ,29874
18
18
  emerge/_emerge/mesher.py,sha256=cYq6AS1xUWpCrx3JCml5OCoDwNR0Z6FnFFOcH7QoSa4,12654
19
19
  emerge/_emerge/periodic.py,sha256=s6B6-zQQ_7MZ4tNRd2a1jzTR3p-RGCW0Y97vLGwirco,9874
20
20
  emerge/_emerge/plot.py,sha256=cf1I9mj7EIUJcq8vmANlUkqoV6QqVaJaP-zlC-T9E18,8041
21
21
  emerge/_emerge/selection.py,sha256=HoRILOW52pJG1griLqdI5NsIEa3kwB0lsSojVcWtaBA,21087
22
- emerge/_emerge/simmodel.py,sha256=dfjMWb1AIYqLlLr5XcYAnIotyQijCajBMSXXNYvj5Fc,17241
22
+ emerge/_emerge/simmodel.py,sha256=xlQoS1ecj7w1vXHI_X5NRpvkqDTqOSAbpt5vUIQK1-w,17300
23
23
  emerge/_emerge/simulation_data.py,sha256=E3567Ro1YxQlidwZrc5G8IxG46Gnfy-k0wYWxckt1Iw,14128
24
- emerge/_emerge/solver.py,sha256=zFNenzBGHch2MizT0JY08dqPpqBTsPT9nWREXIvMeww,36437
24
+ emerge/_emerge/solver.py,sha256=Ynij5wphKHC9ibi7nzSyzPEQ1eUFBBuLtKOhQ-YZwVg,38814
25
25
  emerge/_emerge/system.py,sha256=p4HNz7d_LMRNE9Gk75vVdFecDH2iN_groAM9u-yQTpk,1618
26
26
  emerge/_emerge/elements/__init__.py,sha256=I3n9aic6lJW-oGeqTEZ-Fpxvyl2i-WqsHdnrM3v1oB8,799
27
27
  emerge/_emerge/elements/femdata.py,sha256=Gul5JJQq_gEDjFyf9RwLU-E7Aoh7hIpmrR7nL8SX4Hg,7893
@@ -48,8 +48,8 @@ emerge/_emerge/physics/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3
48
48
  emerge/_emerge/physics/microwave/__init__.py,sha256=QHeILGYWmvbfLl1o9wrTiWLm0evfXDgS0JiikUoMTts,28
49
49
  emerge/_emerge/physics/microwave/adaptive_freq.py,sha256=5Ph2V4TTDjrFMeI7MI20JID9BNUNQ_ygtDSHj5Bkpmw,9736
50
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  emerge/_emerge/physics/microwave/microwave_3d.py,sha256=X4hR1wKpnp0BEYj7zkgnDyFgqPX4BIugJokHAeoTwQU,46966
51
- emerge/_emerge/physics/microwave/microwave_bc.py,sha256=D61ijheyN2Wv1qxhcdsqqk2GNGIRkUy3PJ5LCxV28-g,35236
52
- emerge/_emerge/physics/microwave/microwave_data.py,sha256=NQiSeUZ27qq476W_LLvzgcjHUpWBjbs2sJFlC12d1mw,42870
51
+ emerge/_emerge/physics/microwave/microwave_bc.py,sha256=ko1yCzbJgoXoQ2QYtzWblCDFkraZsbMDrW6VhtvHMxo,35585
52
+ emerge/_emerge/physics/microwave/microwave_data.py,sha256=jm2PZu4zjcWn6caof4y0xa5wFlFkkYZ58PTxq-1m3tY,43691
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  emerge/_emerge/physics/microwave/periodic.py,sha256=wYSUgLFVtCLqSG3EDKoCDRU93iPUzBdXzVRdHTRmbpI,3000
54
54
  emerge/_emerge/physics/microwave/port_functions.py,sha256=aVU__AkVk8b1kH2J_oDLF5iNReCxC9nzCtesFSSSSQo,2112
55
55
  emerge/_emerge/physics/microwave/sc.py,sha256=EjbbHEZ1zc42V0s8ItrN8jIXkrg3N5R495gfurZ2Wck,4992
@@ -63,7 +63,7 @@ emerge/_emerge/physics/microwave/assembly/robinbc.py,sha256=tJg5GzOGuNybu5qdtOuI
63
63
  emerge/_emerge/plot/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
64
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  emerge/_emerge/plot/display.py,sha256=akwFUOgVEZEIyY6eo05jeFgNvKXy41blwpHohAtn8OM,18247
65
65
  emerge/_emerge/plot/grapher.py,sha256=A-FftkaKTHI405hcxP00_FQ9Z6GnvkiP6qRVosiWVcw,2596
66
- emerge/_emerge/plot/simple_plots.py,sha256=J1ZgzUT4PFMvnlddk7vZ4e07IldUhCIO7m27Sg9PDCQ,18472
66
+ emerge/_emerge/plot/simple_plots.py,sha256=Sy-x1RYsNy2n9t8o34ux7Rp4--TYxvgL0uCNMRBbNEk,18544
67
67
  emerge/_emerge/plot/matplotlib/mpldisplay.py,sha256=szKafDrgdAW5Nyc5UOHuJC87n0WGkXYackOVv182TDQ,8671
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  emerge/_emerge/plot/pyvista/__init__.py,sha256=CPclatEu6mFnJZzCQk09g6T6Fh20WTbiLAJGSwAnPXU,30
69
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  emerge/_emerge/plot/pyvista/display.py,sha256=PJnM5yDSYrTPT0Ts7Sia2LOkaSs8h1Mj_Gt7q9lF-i4,32908
@@ -72,7 +72,8 @@ emerge/_emerge/projects/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG
72
72
  emerge/_emerge/projects/_gen_base.txt,sha256=oQ1y985IeqLo4T7jmKiXLUukn2rSMXfXQS09FoYOqkk,607
73
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  emerge/_emerge/projects/_load_base.txt,sha256=JTAhWvHXJQYKe-aDD4HDdmE7f3VXxeurhDzwFCegrEg,511
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  emerge/_emerge/projects/generate_project.py,sha256=TNw-0SpLc82MBq0bd9hB_yqvBZCgmuPonCBsHTp91uk,1450
75
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- emerge-0.4.9.dist-info/RECORD,,
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+ emerge-0.4.10.dist-info/METADATA,sha256=remQfJ3rwwkledMVscUFWMSUSZnOyaS2lIS5tbiPCkQ,2952
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+ emerge-0.4.10.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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+ emerge-0.4.10.dist-info/entry_points.txt,sha256=8rFvAXticpKg4OTC8JEvAksnduW72KIEskCGG9XnFf8,43
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+ emerge-0.4.10.dist-info/licenses/LICENSE,sha256=6tAv8fkWA_-Ell_nboaXajWH3H-vRftIr_4CU2t0S4Y,15180
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+ emerge-0.4.10.dist-info/RECORD,,
@@ -0,0 +1,280 @@
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+ GNU GENERAL PUBLIC LICENSE
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+ Version 2, June 1991
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+
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+ Copyright (C) 1989, 1991 Free Software Foundation, Inc.,
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+ <https://fsf.org/>
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+ Preamble
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