emdbva 0.0.1.dev135__py3-none-any.whl → 0.0.1.dev136__py3-none-any.whl

{emdbva-0.0.1.dev135.dist-info → emdbva-0.0.1.dev136.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: emdbva
-Version: 0.0.1.dev135
+Version: 0.0.1.dev136
 Summary: CryoEM validation toolkit
 Home-page: https://test.pypi.org/project/va/
 Author: Zhe Wang

{emdbva-0.0.1.dev135.dist-info → emdbva-0.0.1.dev136.dist-info}/RECORD

@@ -3,7 +3,7 @@ va/mainva.py,sha256=pfO8f9-UKW75Nl5QAb76RTWWuJUvxubuCGchHdY4BRo,12871
 va/preparation.py,sha256=yUH8CJJ-lz3yvvgjvcP7ErLBEdVMsyLiXxlV5hzmJeE,111052
 va/qscores.csv,sha256=O_4JWiqyu6g6AgndbWExD7tSbFYGF-HK2VdnS9zBYuw,1283930
 va/validationanalysis.py,sha256=AQWut9RxjqqYHhBLrgjwE0DA0X4ZQOBLqsfoOT1v2e0,325383
-va/version.py,sha256=Gf5EyF5O8LRPG5wXEdXuipIvJnzMJhNj0xnYLScaXxU,760
+va/version.py,sha256=f4k2xWh9g6-wsQmRTu8gDpXKeU_HntlZKvT9yAvzKbc,760
 va/metrics/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 va/metrics/bars.py,sha256=MPrVnaf7pr6Q6c4XDVdwnm8Ix1tVQeW2rJEKOGC15nU,23577
 va/metrics/connected_percentage.py,sha256=HwsuC-Ehi767R57AE9NBGW7s-NwcJI0BGJA-3f0ZgsU,2209
@@ -15,7 +15,7 @@ va/metrics/overlap_percentage.py,sha256=WSbJXq3R_ezf5tzoQte-y1oFDAzbUdYTU7-r9BzN
 va/metrics/phaserandomization.py,sha256=tDL06TGW956VpGgQt7ctiVDWSE5NFRCn1662qkBCSX0,9600
 va/metrics/phenix_cc.py,sha256=sagK8svWJF15NkyrJdsdlo9s8UwM3qQvEqx2e4jabVU,10804
 va/metrics/phenix_mm.py,sha256=rNIsbSqzsWE0wz47yvX9u37KVbh4jEtg3WyHxs9JAno,5916
-va/metrics/projections.py,sha256=e7djjVS4ZKV3dyBhg-1r6eRRY3cHU26zgWN9eaCKQrU,18988
+va/metrics/projections.py,sha256=vVxwGTkgDMiWX5rOdyvXQDPBMzTtGOLrRKdOBqBeR94,20721
 va/metrics/qscore.py,sha256=I4pUy3UN7FVuQpr-5YE8j1cE26QH7r5VAHXi59LpsuQ,43040
 va/metrics/residue_locres.py,sha256=dXLwyfaKVxT8ZQtkN7sOOuPsP-G8Up6k14h8sU-s9JQ,6004
 va/metrics/resmap.py,sha256=DhrXZVQegftTeVC8gzA2ho7uLiCdzYpWoYhMq8jyB3A,19960
@@ -33,9 +33,9 @@ va/utils/log_utils.py,sha256=6ercMPRiiy_IITkHfgOO4ydyoIp97QV-KB4pUdEy4KY,520
 va/utils/misc.py,sha256=dYcZf7J6ubzsvwfpy_QP-6R22RexS8ZawzWasOl7PIE,22010
 va/utils/rescolor.py,sha256=kOcjd1m7ItLGt4dMfJiH-MLRQOzqUVOSTyiKO1vvmV4,1847
 va/utils/stars.py,sha256=oV3zzxp3rty36MwBhTdP8RrZegFOX6Gu9RJfxxfP42U,26462
-emdbva-0.0.1.dev135.dist-info/LICENSE,sha256=EKRtSIAJIDq0FaOStnUlRfcyVCRaNuXBEZWfcjSoAYo,11338
-emdbva-0.0.1.dev135.dist-info/METADATA,sha256=wXVo7-ctgUo6bzHe2sP8cy0bt9KB2qTSL9M3F11qe2E,1474
-emdbva-0.0.1.dev135.dist-info/WHEEL,sha256=yQN5g4mg4AybRjkgi-9yy4iQEFibGQmlz78Pik5Or-A,92
-emdbva-0.0.1.dev135.dist-info/entry_points.txt,sha256=3GDgE_RPnedndxYSN7AbQ6ojnQR8dYM3VvJrR_mShSw,38
-emdbva-0.0.1.dev135.dist-info/top_level.txt,sha256=XkRzdik-cabgu1rSDVUmRKNy0pF_RGh-XAviUV9H0p8,3
-emdbva-0.0.1.dev135.dist-info/RECORD,,
+emdbva-0.0.1.dev136.dist-info/LICENSE,sha256=EKRtSIAJIDq0FaOStnUlRfcyVCRaNuXBEZWfcjSoAYo,11338
+emdbva-0.0.1.dev136.dist-info/METADATA,sha256=S4p1-4wRUIPGcsE98SpwBAxbMYSxJSgAnZHPdTAxawo,1474
+emdbva-0.0.1.dev136.dist-info/WHEEL,sha256=yQN5g4mg4AybRjkgi-9yy4iQEFibGQmlz78Pik5Or-A,92
+emdbva-0.0.1.dev136.dist-info/entry_points.txt,sha256=3GDgE_RPnedndxYSN7AbQ6ojnQR8dYM3VvJrR_mShSw,38
+emdbva-0.0.1.dev136.dist-info/top_level.txt,sha256=XkRzdik-cabgu1rSDVUmRKNy0pF_RGh-XAviUV9H0p8,3
+emdbva-0.0.1.dev136.dist-info/RECORD,,

va/metrics/projections.py

@@ -183,7 +183,10 @@ class Projections:
     def _green_percentage(self, image_obj):
         """
         image_obj can be a file path, PIL Image, or numpy array.
-        Returns green percentage as a float.
+        Returns a dictionary with:
+          - percentage: total green percentage in the whole image
+          - diff_vertical: left-half green percentage minus right-half green percentage
+          - diff_horizontal: top-half green percentage minus bottom-half green percentage
         """
         if isinstance(image_obj, str):
             img = Image.open(image_obj).convert("RGB")
@@ -193,10 +196,43 @@ class Projections:
             img = Image.fromarray(image_obj).convert("RGB")
 
         img_array = np.array(img)
-        green_pixels = np.sum(np.all(img_array == [0, 138, 0], axis=-1))
-        total_pixels = img_array.shape[0] * img_array.shape[1]
-        proportion_green = (green_pixels / total_pixels) * 100 if total_pixels else 0.0
-        return round(proportion_green, 2)
+        green_mask = np.all(img_array == [0, 138, 0], axis=-1)
+        height, width = green_mask.shape
+        total_pixels = height * width
+        if total_pixels == 0:
+            return {
+                'percentage': 0.0,
+                'diff_vertical': 0.0,
+                'diff_horizontal': 0.0,
+            }
+
+        green_pixels = np.sum(green_mask)
+        proportion_green = (green_pixels / total_pixels) * 100
+
+        mid_vertical = width // 2
+        left_total = height * mid_vertical
+        right_total = height * (width - mid_vertical)
+        green_pixels_left_half = np.sum(green_mask[:, :mid_vertical])
+        green_pixels_right_half = np.sum(green_mask[:, mid_vertical:])
+        proportion_green_left_half = (green_pixels_left_half / left_total) * 100 if left_total else 0.0
+        proportion_green_right_half = (green_pixels_right_half / right_total) * 100 if right_total else 0.0
+        diff_vertical = proportion_green_left_half - proportion_green_right_half
+
+        mid_horizontal = height // 2
+        top_total = mid_horizontal * width
+        bottom_total = (height - mid_horizontal) * width
+        green_pixels_top_half = np.sum(green_mask[:mid_horizontal, :])
+        green_pixels_bottom_half = np.sum(green_mask[mid_horizontal:, :])
+        proportion_green_top_half = (green_pixels_top_half / top_total) * 100 if top_total else 0.0
+        proportion_green_bottom_half = (green_pixels_bottom_half / bottom_total) * 100 if bottom_total else 0.0
+        diff_horizontal = proportion_green_top_half - proportion_green_bottom_half
+
+        return {
+            'percentage': round(proportion_green, 2),
+            'diff_vertical': round(diff_vertical, 2),
+            'diff_horizontal': round(diff_horizontal, 2),
+        }
+
 
     def orthogonal_projections(self, mapin=None, workdir=None, type=None, label=''):
         map, workdir = self.mapincheck(mapin, workdir)

va/version.py

@@ -18,5 +18,5 @@ under the License.
 
 """
 
-__version__ = '0.0.1.dev135'
+__version__ = '0.0.1.dev136'
 __em_statistics_version__ = '202505.v01'