effspm 0.1.7__cp313-cp313-macosx_10_13_universal2.whl → 0.1.10__cp313-cp313-macosx_10_13_universal2.whl

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effspm/__init__.py CHANGED
@@ -1,3 +1,3 @@
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- from ._core import PrefixProjection
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+ from ._effspm import PrefixProjection, BTMiner
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2
 
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- __all__ = ['PrefixProjection']
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+ __all__ = ['PrefixProjection', 'BTMiner']
effspm/_effspm.cpp ADDED
@@ -0,0 +1,153 @@
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+ #include <pybind11/pybind11.h>
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+ #include <pybind11/stl.h>
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+
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+ // PrefixProjection headers
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+ #include "freq_miner.hpp"
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+ #include "load_inst.hpp"
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+ #include "utility.hpp"
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+
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+ // BTMiner (wrapped in its own namespace in source files)
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+ #include "btminer/src/freq_miner.hpp"
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+ #include "btminer/src/load_inst.hpp"
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+ #include "btminer/src/utility.hpp"
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+ #include "btminer/src/build_mdd.hpp"
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+
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+ namespace py = pybind11;
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+
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+ PYBIND11_MODULE(_effspm, m) {
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+ m.doc() = "Unified SPM library: PrefixProjection, BTMiner, and more";
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+
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+ // PrefixProjection
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+ m.def("PrefixProjection",
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+ [](py::object data,
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+ double minsup,
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+ unsigned int time_limit,
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+ bool preproc,
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+ bool use_dic,
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+ bool verbose,
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+ const std::string &out_file)
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+ {
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+ ::time_limit = time_limit;
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+ ::pre_pro = preproc;
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+ ::use_dic = use_dic;
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+ ::use_list = false;
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+ ::b_disp = verbose;
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+ ::b_write = !out_file.empty();
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+ ::out_file = out_file;
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+
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+ ClearCollected();
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+ start_time = std::clock();
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+
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+ if (py::isinstance<py::str>(data)) {
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+ std::string path = data.cast<std::string>();
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+ if (!Load_instance(path, minsup))
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+ throw std::runtime_error("Failed to load file: " + path);
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+ } else {
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+ auto seqs = data.cast<std::vector<std::vector<int>>>();
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+ items = std::move(seqs);
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+ N = items.size();
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+
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+ int max_id = 0;
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+ for (auto &seq : items)
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+ for (int x : seq)
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+ max_id = std::max(max_id, std::abs(x));
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+ L = max_id;
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+
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+ theta = (minsup < 1.0) ? std::ceil(minsup * N) : minsup;
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+
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+ DFS.clear();
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+ DFS.reserve(L);
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+ for (unsigned int i = 0; i < L; ++i)
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+ DFS.emplace_back(-static_cast<int>(i) - 1);
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+
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+ M = 0;
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+ E = 0;
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+ for (auto &seq : items) {
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+ M = std::max<unsigned int>(M, seq.size());
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+ E += seq.size();
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+ }
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+ }
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+
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+ Freq_miner();
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+
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+ py::dict out;
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+ out["patterns"] = GetCollected();
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+ out["time"] = give_time(std::clock() - start_time);
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+ return out;
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+ },
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+ py::arg("data"),
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+ py::arg("minsup") = 0.01,
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+ py::arg("time_limit") = 36000,
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+ py::arg("preproc") = false,
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+ py::arg("use_dic") = false,
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+ py::arg("verbose") = false,
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+ py::arg("out_file") = ""
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+ );
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+
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+ // BTMiner
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+ m.def("BTMiner",
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+ [](py::object data,
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+ double minsup,
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+ unsigned int time_limit,
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+ bool preproc,
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+ bool use_dic,
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+ bool verbose,
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+ const std::string &out_file)
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+ {
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+ btminer::time_limit = time_limit;
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+ btminer::pre_pro = preproc;
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+ btminer::use_dic = use_dic;
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+ btminer::use_list = false;
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+ btminer::b_disp = verbose;
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+ btminer::b_write = !out_file.empty();
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+ btminer::out_file = out_file;
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+
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+ btminer::ClearCollected();
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+ btminer::start_time = std::clock();
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+
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+ if (py::isinstance<py::str>(data)) {
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+ std::string path = data.cast<std::string>();
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+ if (!btminer::Load_instance(path, minsup))
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+ throw std::runtime_error("Failed to load file: " + path);
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+ } else {
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+ auto seqs = data.cast<std::vector<std::vector<int>>>();
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+ btminer::items = std::move(seqs);
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+ btminer::N = btminer::items.size();
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+
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+ int max_id = 0;
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+ for (auto &seq : btminer::items)
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+ for (int x : seq)
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+ max_id = std::max(max_id, std::abs(x));
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+ btminer::L = max_id;
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+
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+ btminer::theta = (minsup < 1.0) ? std::ceil(minsup * btminer::N) : minsup;
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+
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+ btminer::DFS.clear();
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+ btminer::DFS.reserve(btminer::L);
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+ for (unsigned int i = 0; i < btminer::L; ++i)
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+ btminer::DFS.emplace_back(-static_cast<int>(i) - 1);
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+
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+ btminer::M = 0;
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+ btminer::E = 0;
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+ for (auto &seq : btminer::items) {
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+ btminer::M = std::max<unsigned int>(btminer::M, seq.size());
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+ btminer::E += seq.size();
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+ }
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+ }
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+
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+ btminer::Freq_miner();
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+
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+ py::dict out;
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+ out["patterns"] = btminer::GetCollected();
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+ out["time"] = btminer::give_time(std::clock() - btminer::start_time);
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+ return out;
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+ },
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+ py::arg("data"),
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+ py::arg("minsup") = 0.01,
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+ py::arg("time_limit") = 36000,
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+ py::arg("preproc") = false,
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+ py::arg("use_dic") = false,
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+ py::arg("verbose") = false,
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+ py::arg("out_file") = ""
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+ );
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+ }
Binary file
@@ -0,0 +1,63 @@
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+ #include <vector>
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+ #include <iostream>
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+ #include <unordered_map>
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+ #include "load_inst.hpp"
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+ #include "build_mdd.hpp"
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+ #include "freq_miner.hpp"
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+ #include "utility.hpp"
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+
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+ namespace btminer {
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+
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+ int Add_arc(int item, int last_arc, int& itmset, std::unordered_map<int, int>& ancest_map);
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+ std::vector<Arc> Tree;
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+
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+ void Build_MDD(std::vector<int>& items) {
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+ std::unordered_map<int, int> ancest_map;
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+ int last_arc = 0, itmset = 0;
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+ for (auto it = items.begin(); it != items.end(); ++it)
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+ last_arc = Add_arc(*it, last_arc, itmset, ancest_map);
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+ }
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+
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+ int Add_arc(int item, int last_arc, int& itmset, std::unordered_map<int, int>& ancest_map) {
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+ int anct;
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+ auto p = ancest_map.find(abs(item));
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+ if (p == ancest_map.end())
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+ anct = 0;
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+ else
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+ anct = p->second;
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+
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+ if (item < 0)
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+ ++itmset;
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+
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+ int last_sibl = Tree[last_arc].chld;
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+
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+ if (last_sibl == -1) {
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+ Tree.emplace_back(item, itmset, anct);
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+ last_sibl = Tree.size() - 1;
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+ Tree[last_arc].chld = last_sibl;
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+ if (anct == 0)
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+ DFS[abs(item) - 1].str_pnt.push_back(last_sibl);
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+ } else {
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+ while (Tree[last_sibl].item != item) {
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+ if (Tree[last_sibl].sibl == -1) {
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+ Tree.emplace_back(item, itmset, anct);
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+ Tree[last_sibl].sibl = Tree.size() - 1;
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+ last_sibl = Tree.size() - 1;
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+ if (anct == 0)
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+ DFS[abs(item) - 1].str_pnt.push_back(last_sibl);
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+ break;
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+ }
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+ last_sibl = Tree[last_sibl].sibl;
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+ }
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+ }
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+
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+ if (anct == 0)
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+ ++DFS[abs(item) - 1].freq;
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+
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+ ++Tree[last_sibl].freq;
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+ ancest_map[abs(item)] = last_sibl;
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+
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+ return last_sibl;
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+ }
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+
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+ } // namespace btminer
@@ -0,0 +1,40 @@
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+ #pragma once
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+
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+ #include <vector>
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+ #include <cmath>
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+ #include "load_inst.hpp"
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+
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+ namespace btminer {
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+
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+ void Build_MDD(std::vector<int>& items);
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+
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+ class Arc {
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+ public:
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+ int chld = -1;
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+ int sibl = -1;
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+ int freq = 0;
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+ int anct;
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+ int itmset;
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+ int item;
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+
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+ Arc(int _itm, int _itmset, int _anc) {
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+ itmset = _itmset;
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+ anct = _anc;
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+ item = _itm;
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+ }
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+
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+ Arc(int _itm, int _anc) {
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+ item = _itm;
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+ anct = _anc;
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+ }
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+
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+ Arc() {
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+ chld = -1;
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+ sibl = -1;
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+ freq = 0;
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+ }
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+ };
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+
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+ extern std::vector<Arc> Tree;
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+
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+ }
@@ -0,0 +1,176 @@
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+ #include <iostream>
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+ #include <time.h>
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+ #include <vector>
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+ #include <fstream>
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+ #include <cmath>
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+ #include "freq_miner.hpp"
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+ #include "build_mdd.hpp"
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+ #include "utility.hpp"
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+
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+ namespace btminer {
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+
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+ void Out_patt(std::vector<int>& seq, int freq);
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+ void Extend_patt(Pattern _patt);
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+
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+ int num_patt = 0;
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+
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+ void Freq_miner() {
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+ std::vector<int> islist;
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+ for (int i = 0; i < L; ++i) {
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+ if (DFS[i].freq >= theta)
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+ islist.push_back(i);
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+ }
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+
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+ for (int i = 0; i < DFS.size(); ++i) {
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+ DFS[i].ilist = islist;
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+ DFS[i].slist = islist;
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+ }
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+
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+ while (!DFS.empty() && give_time(clock() - start_time) < time_limit) {
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+ if (DFS.back().freq >= theta)
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+ Extend_patt(DFS.back());
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+ else
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+ DFS.pop_back();
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+ }
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+ }
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+
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+ void Extend_patt(Pattern _patt) {
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+ DFS.pop_back();
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+ std::vector<bool> slist(L, 0);
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+ std::vector<bool> ilist(L, 0);
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+
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+ for (auto it : _patt.slist) slist[it] = 1;
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+ for (auto it : _patt.ilist) ilist[it] = 1;
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+
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+ int itmset_size = 1;
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+ int last_neg = _patt.seq.size() - 1;
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+ while (_patt.seq[last_neg] > 0) {
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+ --last_neg;
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+ ++itmset_size;
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+ }
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+
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+ std::vector<Pattern> pot_patt(2 * L);
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+ std::vector<int> DFS_patt_init, DFS_patt, DFS_numfound, last_strpnt(L, 0);
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+
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+ for (int pnt = 0; pnt < _patt.str_pnt.size(); ++pnt) {
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+ DFS_patt_init.push_back(_patt.str_pnt[pnt]);
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+ while (!DFS_patt_init.empty()) {
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+ int cur_sibl = Tree[DFS_patt_init.back()].chld;
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+ DFS_patt_init.pop_back();
60
+ while (cur_sibl != -1) {
61
+ int cur_itm = Tree[cur_sibl].item;
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+ if (cur_itm < 0) {
63
+ cur_itm = -cur_itm;
64
+ if (slist[cur_itm - 1]) {
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+ pot_patt[cur_itm + L - 1].freq += Tree[cur_sibl].freq;
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+ pot_patt[cur_itm + L - 1].str_pnt.push_back(cur_sibl);
67
+ }
68
+ if (Tree[cur_sibl].chld != -1) {
69
+ DFS_patt.push_back(cur_sibl);
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+ DFS_numfound.push_back(cur_itm == -_patt.seq[last_neg] ? 1 : 0);
71
+ }
72
+ } else {
73
+ if (ilist[cur_itm - 1]) {
74
+ pot_patt[cur_itm - 1].freq += Tree[cur_sibl].freq;
75
+ pot_patt[cur_itm - 1].str_pnt.push_back(cur_sibl);
76
+ }
77
+ if (Tree[cur_sibl].chld != -1)
78
+ DFS_patt_init.push_back(cur_sibl);
79
+ }
80
+ cur_sibl = Tree[cur_sibl].sibl;
81
+ }
82
+ }
83
+
84
+ for (auto it : _patt.ilist)
85
+ last_strpnt[it] = pot_patt[it].str_pnt.size();
86
+
87
+ while (!DFS_patt.empty()) {
88
+ int cur_sibl = Tree[DFS_patt.back()].chld;
89
+ int num_found = DFS_numfound.back();
90
+ DFS_patt.pop_back();
91
+ DFS_numfound.pop_back();
92
+ while (cur_sibl != -1) {
93
+ int cur_itm = Tree[cur_sibl].item;
94
+ if (cur_itm > 0) {
95
+ if (num_found == itmset_size && ilist[cur_itm - 1] &&
96
+ (Tree[Tree[cur_sibl].anct].itmset < Tree[_patt.str_pnt[pnt]].itmset ||
97
+ !check_parent(cur_sibl, _patt.str_pnt[pnt], last_strpnt[cur_itm - 1], pot_patt[cur_itm - 1].str_pnt))) {
98
+ pot_patt[cur_itm - 1].freq += Tree[cur_sibl].freq;
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+ pot_patt[cur_itm - 1].str_pnt.push_back(cur_sibl);
100
+ }
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+ if (slist[cur_itm - 1] && Tree[Tree[cur_sibl].anct].itmset <= Tree[_patt.str_pnt[pnt]].itmset) {
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+ pot_patt[cur_itm + L - 1].freq += Tree[cur_sibl].freq;
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+ pot_patt[cur_itm + L - 1].str_pnt.push_back(cur_sibl);
104
+ }
105
+ if (Tree[cur_sibl].chld != -1) {
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+ DFS_patt.push_back(cur_sibl);
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+ if (!_patt.ilist.empty()) {
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+ DFS_numfound.push_back((num_found < itmset_size && cur_itm == abs(_patt.seq[last_neg + num_found])) ? num_found + 1 : num_found);
109
+ }
110
+ }
111
+ } else {
112
+ cur_itm = -cur_itm;
113
+ if (slist[cur_itm - 1] && Tree[Tree[cur_sibl].anct].itmset <= Tree[_patt.str_pnt[pnt]].itmset) {
114
+ pot_patt[cur_itm + L - 1].freq += Tree[cur_sibl].freq;
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+ pot_patt[cur_itm + L - 1].str_pnt.push_back(cur_sibl);
116
+ }
117
+ if (Tree[cur_sibl].chld != -1) {
118
+ DFS_patt.push_back(cur_sibl);
119
+ if (!_patt.ilist.empty()) {
120
+ DFS_numfound.push_back(cur_itm == -_patt.seq[last_neg] ? 1 : 0);
121
+ }
122
+ }
123
+ }
124
+ cur_sibl = Tree[cur_sibl].sibl;
125
+ }
126
+ }
127
+ }
128
+
129
+ std::vector<int> slistp, ilistp;
130
+ for (auto it : _patt.ilist) if (pot_patt[it].freq >= theta) ilistp.push_back(it);
131
+ for (auto it : _patt.slist) if (pot_patt[it + L].freq >= theta) slistp.push_back(it);
132
+
133
+ for (auto it : ilistp) {
134
+ pot_patt[it].str_pnt.shrink_to_fit();
135
+ DFS.push_back(pot_patt[it]);
136
+ DFS.back().seq = _patt.seq;
137
+ DFS.back().seq.push_back(it + 1);
138
+ DFS.back().seq.shrink_to_fit();
139
+ DFS.back().slist = slistp;
140
+ DFS.back().ilist = ilistp;
141
+ if (b_disp || b_write) Out_patt(DFS.back().seq, DFS.back().freq);
142
+ ++num_patt;
143
+ }
144
+
145
+ for (auto it : slistp) {
146
+ pot_patt[it + L].str_pnt.shrink_to_fit();
147
+ DFS.push_back(pot_patt[it + L]);
148
+ DFS.back().seq = _patt.seq;
149
+ DFS.back().seq.push_back(-it - 1);
150
+ DFS.back().seq.shrink_to_fit();
151
+ DFS.back().slist = slistp;
152
+ DFS.back().ilist = slistp;
153
+ if (b_disp || b_write) Out_patt(DFS.back().seq, DFS.back().freq);
154
+ ++num_patt;
155
+ }
156
+ }
157
+
158
+ void Out_patt(std::vector<int>& seq, int freq) {
159
+ std::ofstream file_o;
160
+ if (b_write) file_o.open(out_file, std::ios::app);
161
+
162
+ for (int ii = 0; ii < seq.size(); ii++) {
163
+ if (b_disp) std::cout << seq[ii] << " ";
164
+ if (b_write) file_o << seq[ii] << " ";
165
+ }
166
+ if (b_disp) std::cout << std::endl;
167
+ if (b_write) file_o << std::endl;
168
+
169
+ if (b_disp) std::cout << "************** Freq: " << freq << std::endl;
170
+ if (b_write) {
171
+ file_o << "************** Freq: " << freq << std::endl;
172
+ file_o.close();
173
+ }
174
+ }
175
+
176
+ } // namespace btminer
@@ -0,0 +1,39 @@
1
+ #pragma once
2
+
3
+ #include <vector>
4
+ #include "load_inst.hpp"
5
+ #include "build_mdd.hpp"
6
+
7
+ namespace btminer {
8
+
9
+ void Freq_miner();
10
+
11
+ class Pattern {
12
+ public:
13
+ std::vector<int> seq;
14
+ std::vector<int> str_pnt;
15
+ std::vector<int> slist;
16
+ std::vector<int> ilist;
17
+ int freq;
18
+
19
+ Pattern(std::vector<int>& _seq, int item) {
20
+ seq.swap(_seq);
21
+ seq.push_back(item);
22
+ freq = 0;
23
+ }
24
+
25
+ Pattern(int item) {
26
+ seq.push_back(item);
27
+ freq = 0;
28
+ }
29
+
30
+ Pattern() {
31
+ freq = 0;
32
+ }
33
+ };
34
+
35
+ extern int num_patt;
36
+ extern int num_max_patt;
37
+ extern std::vector<Pattern> DFS;
38
+
39
+ } // namespace btminer
@@ -0,0 +1,194 @@
1
+ #include <iostream>
2
+ #include <sstream>
3
+ #include <fstream>
4
+ #include <cmath>
5
+ #include <ctime>
6
+ #include <map>
7
+ #include <vector>
8
+ #include <algorithm>
9
+ #include "load_inst.hpp"
10
+ #include "utility.hpp"
11
+ #include "build_mdd.hpp"
12
+ #include "freq_miner.hpp"
13
+
14
+ namespace btminer {
15
+
16
+ using namespace std;
17
+
18
+ extern int num_nodes, cur_node; // ✅ keep these if needed
19
+
20
+ map<string, int> item_map;
21
+ map<int, string> item_map_rev;
22
+ vector<int> freq;
23
+ vector<int> item_dic;
24
+
25
+
26
+ void Load_items_pre(string& inst_name);
27
+ bool Load_items(string& inst_name);
28
+ bool Preprocess(string& inst, double thresh);
29
+
30
+ bool Load_instance(string& items_file, double thresh) {
31
+ clock_t kk = clock();
32
+ Tree.emplace_back(0, 0, 0);
33
+
34
+ if (pre_pro) {
35
+ if (!Preprocess(items_file, thresh))
36
+ return false;
37
+
38
+ cout << "\nPreprocess done in " << give_time(clock() - kk) << " seconds\n\n";
39
+
40
+ DFS.reserve(L);
41
+ for (int i = 0; i < L; ++i)
42
+ DFS.emplace_back(-i - 1);
43
+
44
+ kk = clock();
45
+ Load_items_pre(items_file);
46
+ } else if (!Load_items(items_file))
47
+ return false;
48
+ else {
49
+ theta = (thresh < 1) ? ceil(thresh * N * N_mult) : thresh;
50
+ }
51
+
52
+ cout << "\nMDD Database built in " << give_time(clock() - kk) << " seconds\n\n";
53
+ cout << "Found " << N * N_mult << " sequence, with max line len " << M << ", and " << L << " items, and " << E << " enteries\n";
54
+ cout << "Total MDD nodes: " << Tree.size() << endl;
55
+
56
+ return true;
57
+ }
58
+
59
+ bool Preprocess(string& inst, double thresh) {
60
+ ifstream file(inst);
61
+ if (!file.good()) {
62
+ cout << "!!!!!! No such file exists: " << inst << " !!!!!!\n";
63
+ return false;
64
+ }
65
+
66
+ string line;
67
+ int size_m, ditem;
68
+ while (getline(file, line) && give_time(clock() - start_time) < time_limit) {
69
+ ++N;
70
+ vector<bool> counted(L, 0);
71
+ istringstream word(line);
72
+ string itm;
73
+ while (word >> itm) {
74
+ ditem = stoi(itm);
75
+ if (L < abs(ditem)) L = abs(ditem);
76
+ while (freq.size() < L) {
77
+ freq.push_back(0);
78
+ counted.push_back(0);
79
+ }
80
+ if (!counted[abs(ditem) - 1]) {
81
+ ++freq[abs(ditem) - 1];
82
+ counted[abs(ditem) - 1] = 1;
83
+ }
84
+ }
85
+ }
86
+
87
+ theta = (thresh < 1) ? ceil(thresh * N * N_mult) : thresh;
88
+
89
+ int real_L = 0;
90
+ item_dic = vector<int>(L, -1);
91
+ for (int i = 0; i < L; ++i) {
92
+ if (freq[i] >= theta)
93
+ item_dic[i] = ++real_L;
94
+ }
95
+
96
+ cout << "Original number of items: " << L << " Reduced to: " << real_L << endl;
97
+ L = real_L;
98
+ N = 0;
99
+ return true;
100
+ }
101
+
102
+ void Load_items_pre(string& inst_name) {
103
+ ifstream file(inst_name);
104
+ if (!file.good()) return;
105
+
106
+ string line;
107
+ int ditem;
108
+ while (getline(file, line) && give_time(clock() - start_time) < time_limit) {
109
+ istringstream word(line);
110
+ string itm;
111
+ vector<int> temp_vec;
112
+ bool sgn = 0;
113
+ while (word >> itm) {
114
+ if (use_dic) {
115
+ auto it = item_map.find(itm);
116
+ if (it == item_map.end()) {
117
+ item_map[itm] = ++L;
118
+ item_map_rev[L] = itm;
119
+ ditem = L;
120
+ } else {
121
+ ditem = it->second;
122
+ }
123
+ } else {
124
+ ditem = stoi(itm);
125
+ }
126
+
127
+ if (freq[abs(ditem) - 1] < theta) {
128
+ if (!sgn)
129
+ sgn = ditem < 0;
130
+ continue;
131
+ } else {
132
+ ditem = (ditem > 0) ? item_dic[ditem - 1] : -item_dic[-ditem - 1];
133
+ }
134
+
135
+ if (sgn && ditem > 0)
136
+ ditem = -ditem;
137
+ sgn = 0;
138
+
139
+ temp_vec.push_back(ditem);
140
+ }
141
+
142
+ if (temp_vec.empty()) continue;
143
+
144
+ ++N;
145
+ if (temp_vec.size() > M) M = temp_vec.size();
146
+
147
+ Build_MDD(temp_vec);
148
+ }
149
+ }
150
+
151
+ bool Load_items(string& inst_name) {
152
+ ifstream file(inst_name);
153
+ if (!file.good()) {
154
+ cout << "!!!!!! No such file exists: " << inst_name << " !!!!!!\n";
155
+ return false;
156
+ }
157
+
158
+ string line;
159
+ int ditem;
160
+ while (getline(file, line) && give_time(clock() - start_time) < time_limit) {
161
+ ++N;
162
+ istringstream word(line);
163
+ string itm;
164
+ vector<int> temp_vec;
165
+ while (word >> itm) {
166
+ if (use_dic) {
167
+ auto it = item_map.find(itm);
168
+ if (it == item_map.end()) {
169
+ item_map[itm] = ++L;
170
+ item_map_rev[L] = itm;
171
+ ditem = L;
172
+ } else {
173
+ ditem = it->second;
174
+ }
175
+ } else {
176
+ ditem = stoi(itm);
177
+ if (L < abs(ditem)) {
178
+ L = abs(ditem);
179
+ while (DFS.size() < L && !just_build) {
180
+ DFS.reserve(L);
181
+ DFS.emplace_back(-DFS.size() - 1);
182
+ }
183
+ }
184
+ }
185
+ temp_vec.push_back(ditem);
186
+ }
187
+
188
+ if (temp_vec.size() > M) M = temp_vec.size();
189
+ Build_MDD(temp_vec);
190
+ }
191
+ return true;
192
+ }
193
+
194
+ } // namespace btminer
@@ -0,0 +1,23 @@
1
+ #pragma once
2
+
3
+ #include <vector>
4
+ #include <string>
5
+ #include <fstream>
6
+ #include <map>
7
+ #include <unordered_set>
8
+ #include <unordered_map>
9
+ #include <ctime>
10
+
11
+ namespace btminer {
12
+
13
+ bool Load_instance(std::string& items_file, double thresh);
14
+
15
+ extern std::string out_file, folder;
16
+
17
+ extern bool b_disp, b_write, use_dic, just_build, pre_pro;
18
+
19
+ extern int N, M, L, theta, num_nodes, M_mult, N_mult, time_limit, cur_node;
20
+
21
+ extern clock_t start_time;
22
+
23
+ } // namespace btminer
@@ -0,0 +1,92 @@
1
+ #include <iostream>
2
+ #include <ctime>
3
+ #include <cstring>
4
+ #include <string>
5
+ #include "load_inst.hpp"
6
+ #include "build_mdd.hpp"
7
+ #include "utility.hpp"
8
+ #include "freq_miner.hpp"
9
+
10
+ namespace btminer {
11
+
12
+ // These variables are declared in utility.hpp and defined in utility.cpp
13
+ extern std::string out_file;
14
+ extern bool b_disp, b_write, use_dic, just_build;
15
+ extern clock_t start_time;
16
+
17
+ // This one is only used in main
18
+ // Local to main
19
+ int time_limit = 30 * 3600; // Local to main
20
+ std::string folder;
21
+
22
+ int main(int argc, char* argv[]) {
23
+ std::string VV, attr;
24
+ double thresh = 0;
25
+
26
+ for (int i = 1; i < argc; i++) {
27
+ if (argv[i][0] != '-' || isdigit(argv[i][1]))
28
+ continue;
29
+ else if (strcmp(argv[i], "-thr") == 0)
30
+ thresh = std::stod(argv[i + 1]);
31
+ else if (strcmp(argv[i], "-file") == 0)
32
+ VV = argv[i + 1];
33
+ else if (strcmp(argv[i], "-N_mult") == 0)
34
+ N_mult = std::stoi(argv[i + 1]);
35
+ else if (strcmp(argv[i], "-M_mult") == 0)
36
+ M_mult = std::stoi(argv[i + 1]);
37
+ else if (strcmp(argv[i], "-time") == 0)
38
+ time_limit = std::stoi(argv[i + 1]);
39
+ else if (strcmp(argv[i], "-jbuild") == 0)
40
+ just_build = true;
41
+ else if (strcmp(argv[i], "-folder") == 0)
42
+ folder = argv[i + 1];
43
+ else if (strcmp(argv[i], "-npre") == 0)
44
+ pre_pro = false;
45
+ else if (strcmp(argv[i], "-dic") == 0)
46
+ use_dic = true;
47
+ else if (strcmp(argv[i], "-out") == 0) {
48
+ if (i + 1 == argc || argv[i + 1][0] == '-')
49
+ b_disp = true;
50
+ else if (argv[i + 1][0] == '+') {
51
+ b_disp = true;
52
+ b_write = true;
53
+ if (strlen(argv[i + 1]) > 1) {
54
+ out_file = argv[i + 1];
55
+ out_file = out_file.substr(1);
56
+ } else {
57
+ out_file = VV;
58
+ }
59
+ } else {
60
+ b_write = true;
61
+ out_file = argv[i + 1];
62
+ }
63
+ } else {
64
+ std::cout << "Command " << argv[i] << " not recognized and skipped.\n";
65
+ }
66
+ }
67
+
68
+ std::cout << "\n********************** " << VV << " N_mult: " << N_mult << " M_mult: " << M_mult << "**********************\n";
69
+
70
+ std::string item_file = folder + VV + ".txt";
71
+
72
+ std::cout << "loading instances...\n";
73
+ start_time = clock();
74
+
75
+ if (!Load_instance(item_file, thresh)) {
76
+ std::cout << "Files invalid, exiting.\n";
77
+ std::cin.get();
78
+ return 0;
79
+ }
80
+
81
+ if (!just_build && give_time(clock() - start_time) < time_limit) {
82
+ Freq_miner();
83
+ if (give_time(clock() - start_time) >= time_limit)
84
+ std::cout << "TIME LIMIT REACHED\n";
85
+ std::cout << "Mining Complete\n\nFound a total of " << num_patt << " patterns\n";
86
+ std::cout << "\nTotal CPU time " << give_time(clock() - start_time) << " seconds\n\n";
87
+ }
88
+
89
+ return 0;
90
+ }
91
+
92
+ } // namespace btminer
@@ -0,0 +1,67 @@
1
+ #include "utility.hpp"
2
+ #include "build_mdd.hpp"
3
+ #include "load_inst.hpp"
4
+ #include <iostream>
5
+
6
+ namespace btminer {
7
+
8
+ // === Global Variables ===
9
+ bool use_dic = false;
10
+ std::vector<std::vector<int>> items;
11
+ bool use_list = false;
12
+ bool just_build = false;
13
+ int E = 0, M = 0, N = 0, L = 0, theta = 0;
14
+ std::vector<Pattern> DFS;
15
+ clock_t start_time;
16
+ bool b_disp = false, b_write = false;
17
+ std::string out_file;
18
+
19
+ bool pre_pro = true;
20
+ int N_mult = 1, M_mult = 1;
21
+ int time_limit = 30 * 3600;
22
+
23
+ // === Function Definitions ===
24
+
25
+ int find_ID(std::vector<int>& vec, int itm) {
26
+ int plc = 0;
27
+ while (plc < vec.size() && vec[plc] != itm)
28
+ ++plc;
29
+ return (plc == vec.size()) ? -1 : plc;
30
+ }
31
+
32
+ bool check_parent(int cur_arc, int str_pnt, int start, std::vector<int>& strpnt_vec) {
33
+ std::vector<int> ancestors;
34
+ int cur_anct = Tree[cur_arc].anct;
35
+
36
+ while (Tree[cur_anct].itmset > Tree[str_pnt].itmset) {
37
+ if (Tree[cur_anct].item > 0)
38
+ ancestors.push_back(cur_anct);
39
+ cur_anct = Tree[cur_anct].anct;
40
+ }
41
+
42
+ if (Tree[cur_anct].itmset == Tree[str_pnt].itmset)
43
+ return true;
44
+
45
+ for (auto it = ancestors.rbegin(); it != ancestors.rend(); ++it) {
46
+ for (int i = start; i < strpnt_vec.size(); ++i) {
47
+ if (strpnt_vec[i] == *it)
48
+ return true;
49
+ }
50
+ }
51
+
52
+ return false;
53
+ }
54
+
55
+ bool find_pnt(Arc* pnt, std::vector<Arc*>& vec, int pos) {
56
+ for (size_t i = pos; i < vec.size(); ++i) {
57
+ if (vec[i] == pnt)
58
+ return true;
59
+ }
60
+ return false;
61
+ }
62
+
63
+ float give_time(clock_t kk) {
64
+ return static_cast<float>(kk) / CLOCKS_PER_SEC;
65
+ }
66
+
67
+ } // namespace btminer
@@ -0,0 +1,44 @@
1
+ #pragma once
2
+
3
+ #include <vector>
4
+ #include <ctime>
5
+ #include <string>
6
+ #include "build_mdd.hpp"
7
+ #include "freq_miner.hpp"
8
+ #include "load_inst.hpp"
9
+
10
+ namespace btminer {
11
+
12
+ // === Utility function declarations ===
13
+ bool find_pnt(Arc* pnt, std::vector<Arc*>& vec, int pos);
14
+ int find_ID(std::vector<int>& vec, int itm);
15
+ float give_time(clock_t kk);
16
+ bool check_parent(int cur_arc, int str_pnt, int start, std::vector<int>& strpnt_vec);
17
+
18
+ // === Global variables (DECLARATIONS ONLY) ===
19
+ extern std::vector<std::vector<int>> items;
20
+ extern bool use_list;
21
+ extern bool just_build;
22
+ extern int E, M, N, L, theta;
23
+ extern std::vector<Pattern> DFS;
24
+ extern clock_t start_time;
25
+ extern bool b_disp, b_write;
26
+ extern std::string out_file;
27
+ extern bool pre_pro;
28
+ extern int N_mult, M_mult;
29
+ extern int time_limit;
30
+
31
+ // === Python-friendly accessors ===
32
+ inline void ClearCollected() {
33
+ DFS.clear();
34
+ }
35
+
36
+ inline std::vector<std::vector<int>> GetCollected() {
37
+ std::vector<std::vector<int>> patterns;
38
+ for (const auto& p : DFS) {
39
+ patterns.push_back(p.seq);
40
+ }
41
+ return patterns;
42
+ }
43
+
44
+ } // namespace btminer
effspm/main.cpp ADDED
@@ -0,0 +1,103 @@
1
+ #include <iostream>
2
+ #include <time.h>
3
+ #include <string.h>
4
+ #include <string>
5
+ #include "load_inst.hpp"
6
+ #include "freq_miner.hpp"
7
+ #include "utility.hpp"
8
+
9
+ using namespace std;
10
+
11
+ string out_file;
12
+
13
+ bool b_disp = 0, b_write = 0, use_dic = 0, use_list = 0, pre_pro = 0;
14
+
15
+ unsigned int time_limit = 10 * 3600;
16
+
17
+ clock_t start_time;
18
+
19
+ int main(int argc, char* argv[]) {
20
+
21
+ double thresh = 0;
22
+ string VV, folder;
23
+ for (int i = 1; i < argc; ++i){
24
+ if (argv[i][0] !='-')
25
+ continue;
26
+ else if (strcmp(argv[i], "-thr") == 0)
27
+ thresh = stof(argv[i + 1]);
28
+ else if (strcmp(argv[i], "-file") == 0)
29
+ VV = argv[i + 1];
30
+ else if (strcmp(argv[i], "-folder") == 0)
31
+ folder = argv[i + 1];
32
+ else if (strcmp(argv[i], "-time") == 0)
33
+ time_limit = stoi(argv[i + 1]);
34
+ else if (strcmp(argv[i], "-uselist") == 0)
35
+ use_list = 1;
36
+ else if (strcmp(argv[i], "-preproc") == 0)
37
+ pre_pro = 1;
38
+ else if (strcmp(argv[i], "-dic") == 0)
39
+ use_dic = 1;
40
+ else if (strcmp(argv[i], "-out") == 0){
41
+ if (i + 1 == argc || argv[i + 1][0] == '-')
42
+ b_disp = 1;
43
+ else if (argv[i + 1][0] == '+') {
44
+ b_disp = 1;
45
+ b_write = 1;
46
+ out_file = argv[i + 1];
47
+ out_file = out_file.substr(1,out_file.size()-1);
48
+ }
49
+ else {
50
+ b_write = 1;
51
+ out_file = argv[i + 1];
52
+ }
53
+ }
54
+ else
55
+ cout << "Command " << argv[i] << " not recognized and skipped.\n";
56
+ }
57
+
58
+ if (thresh == 0){
59
+ cout << "No Threshold given, using threshold deafult of 1%\n";
60
+ thresh = 0.01;
61
+ }
62
+ if (folder.back() != '/'){
63
+ folder += '/';
64
+ }
65
+
66
+
67
+ cout << "\n********************** " << VV << "**********************\n";
68
+
69
+ string item_file = folder + VV + ".txt";
70
+ //out_file = folder + VV + "_result.txt";
71
+ cout << "loading instances...\n";
72
+
73
+ start_time = clock();
74
+
75
+ if(!Load_instance(item_file, thresh)){
76
+ cout << "Files invalid, exiting.\n";
77
+ return 0;
78
+ }
79
+
80
+ cout << "Instances loaded\n";
81
+
82
+ if (give_time(clock() - start_time) < time_limit) {
83
+ cout << "\nRunning mining algorithm...\n";
84
+ Freq_miner();
85
+ if (give_time(clock() - start_time) >= time_limit)
86
+ cout << "TIME LIMIT REACHED\n";
87
+ cout << "Mining Complete\n\nFound a total of " << num_patt << " patterns\n";
88
+ }
89
+
90
+ cout << "Total CPU time is: ";
91
+ cout << give_time(clock() - start_time) << "\n";
92
+
93
+ if (b_write){
94
+ ofstream file;
95
+ file.open(out_file, std::ios::app);
96
+ file << "\nMining completed in " << give_time(clock() - start_time) << " seconds\n";
97
+ //file << "Found a total of " << num_max_patt << " maximal patterns\n";
98
+ file.close();
99
+ }
100
+
101
+
102
+ return 0;
103
+ }
@@ -0,0 +1,237 @@
1
+ Metadata-Version: 2.4
2
+ Name: effspm
3
+ Version: 0.1.10
4
+ Summary: Prefix‑Projection and other sequential pattern mining algorithms
5
+ Author: Yeswanth Vootla
6
+ Author-email: yeshu999 <vootlayeswanth20@gmail.com>
7
+ License: Apache License
8
+ Version 2.0, January 2004
9
+ http://www.apache.org/licenses/
10
+
11
+ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
12
+
13
+ 1. Definitions.
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+
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+ "License" shall mean the terms and conditions for use, reproduction,
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+ and distribution as defined by Sections 1 through 9 of this document.
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+ "Licensor" shall mean the copyright owner or entity authorized by
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+
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+ "Legal Entity" shall mean the union of the acting entity and all
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+ other entities that control, are controlled by, or are under common
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+ control with that entity. For the purposes of this definition,
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+ "control" means (i) the power, direct or indirect, to cause the
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+ direction or management of such entity, whether by contract or
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+ otherwise, or (ii) ownership of fifty percent (50%) or more of the
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+ outstanding shares, or (iii) beneficial ownership of such entity.
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+ "You" (or "Your") shall mean an individual or Legal Entity
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+ "Source" form shall mean the preferred form for making modifications,
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+ "Object" form shall mean any form resulting from mechanical
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+ transformation or translation of a Source form, including but
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+ editorial revisions, annotations, elaborations, or other modifications
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+
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+ Project-URL: Homepage, https://github.com/yeshu999/effspm
210
+ Project-URL: Source, https://github.com/yeshu999/effspm
211
+ Classifier: Programming Language :: Python :: 3.7
212
+ Classifier: Programming Language :: Python :: 3.8
213
+ Classifier: Programming Language :: Python :: 3.9
214
+ Classifier: Programming Language :: Python :: 3.10
215
+ Classifier: Programming Language :: Python :: 3.11
216
+ Classifier: Programming Language :: Python :: 3.12
217
+ Classifier: Programming Language :: Python :: 3.13
218
+ Classifier: Programming Language :: C++
219
+ Classifier: License :: OSI Approved :: MIT License
220
+ Classifier: Operating System :: OS Independent
221
+ Requires-Python: >=3.7
222
+ Description-Content-Type: text/markdown
223
+ License-File: LICENSE
224
+ Requires-Dist: pybind11>=2.6
225
+ Dynamic: author
226
+ Dynamic: license-file
227
+
228
+ # effspm
229
+
230
+ **Efficient Sequential Pattern Mining via Prefix‑Projection**
231
+
232
+ This library provides a Python interface to mine sequential patterns using the prefix‑projection algorithm, implemented in C++ for performance and exposed via pybind11.
233
+
234
+ ## Installation
235
+
236
+ ```bash
237
+ pip install effspm
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@@ -1,6 +1,5 @@
1
1
  Wheel-Version: 1.0
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- Generator: setuptools (79.0.1)
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+ Generator: setuptools (80.8.0)
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  Root-Is-Purelib: false
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  Tag: cp313-cp313-macosx_10_13_universal2
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- Generator: delocate 0.13.0
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Binary file
@@ -1,38 +0,0 @@
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- Metadata-Version: 2.4
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- Name: effspm
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- Version: 0.1.7
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- Summary: Prefix‑Projection sequential pattern mining
5
- Home-page: https://github.com/yeshu999/effspm
6
- Author: yeshu999
7
- Author-email: yeshu999 <vootlayeswanth20@gmail.com>
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- Project-URL: Homepage, https://github.com/yeshu999/effspm
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- Project-URL: Source, https://github.com/yeshu999/effspm
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- Classifier: Programming Language :: Python :: 3
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- Classifier: Programming Language :: C++
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- Classifier: License :: OSI Approved :: MIT License
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- Classifier: Operating System :: OS Independent
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- Requires-Python: >=3.7
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- Description-Content-Type: text/markdown
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- License-File: LICENSE
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- Requires-Dist: pybind11>=2.6
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- Dynamic: author
25
- Dynamic: home-page
26
- Dynamic: license-file
27
- Dynamic: requires-python
28
-
29
- # effspm
30
-
31
- **Efficient Sequential Pattern Mining via Prefix‑Projection**
32
-
33
- This library provides a Python interface to mine sequential patterns using the prefix‑projection algorithm, implemented in C++ for performance and exposed via pybind11.
34
-
35
- ## Installation
36
-
37
- ```bash
38
- pip install effspm
@@ -1,14 +0,0 @@
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