eegdash 0.3.3.dev178374711__py3-none-any.whl → 0.3.4__py3-none-any.whl

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eegdash/__init__.py CHANGED
@@ -7,4 +7,4 @@ __init__mongo_client()
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  __all__ = ["EEGDash", "EEGDashDataset", "EEGChallengeDataset"]
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- __version__ = "0.3.3.dev178374711"
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+ __version__ = "0.3.4"
eegdash/data_utils.py CHANGED
@@ -2,10 +2,12 @@ import json
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  import logging
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  import os
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  import re
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+ import warnings
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  from pathlib import Path
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  from typing import Any
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  import mne
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+ import mne_bids
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  import numpy as np
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  import pandas as pd
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  import s3fs
@@ -174,7 +176,16 @@ class EEGDashBaseDataset(BaseDataset):
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  self._download_dependencies()
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  self._download_s3()
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  if self._raw is None:
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- self._raw = mne.io.read_raw(fname=self.bidspath, verbose=False)
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+ # capturing any warnings
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+ # to-do: remove this once is fixed on the mne-bids side.
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+ with warnings.catch_warnings(record=True) as w:
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+ self._raw = mne_bids.read_raw_bids(
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+ bids_path=self.bidspath, verbose="ERROR"
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+ )
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+ for warning in w:
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+ logger.warning(
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+ f"Warning while reading BIDS file: {warning.message}"
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+ )
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  # === BaseDataset and PyTorch Dataset interface ===
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@@ -0,0 +1,255 @@
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+ dataset,n_records,n_subjects,n_tasks,nchans_set,sampling_freqs,duration_hours_total
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+ ds002718,18,18,1,74,250,14.844
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+ ds005505,1342,136,10,129,500,125.366
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+ ds004745,6,6,1,,1000,0.0
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+ ds005514,2885,295,10,129,500,213.008
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+ ds005512,2320,257,10,129,500,196.205
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+ ds005510,1227,135,10,129,500,112.464
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+ ds005511,3100,381,10,"6,129",500,285.629
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+ ds005509,3326,330,10,129,500,274.559
10
+ ds005508,3342,324,10,129,500,269.281
11
+ ds005507,1812,184,10,129,500,168.649
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+ ds005506,1405,150,10,129,500,127.896
13
+ ds004854,1,1,1,64,128,0.535
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+ ds004853,1,1,1,64,128,0.535
15
+ ds004844,68,17,1,64,1024,21.252
16
+ ds004843,92,14,1,64,256,29.834
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+ ds004842,102,14,1,64,256,20.102
18
+ ds004852,1,1,1,64,128,0.535
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+ ds004851,1,1,1,64,128,0.535
20
+ ds004850,1,1,1,64,128,0.535
21
+ ds004855,1,1,1,64,128,0.535
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+ ds004849,1,1,1,64,128,0.535
23
+ ds004841,147,20,1,64,256,29.054
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+ ds004661,17,17,1,64,128,10.137
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+ ds004660,42,21,1,32,"2048,512",23.962
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+ ds004657,119,24,1,64,"1024,8192",27.205
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+ ds004362,1526,109,1,64,"128,160",48.592
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+ ds004010,24,24,1,64,1000,26.457
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+ ds002181,226,226,1,125,500,7.676
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+ ds004554,16,16,1,99,1000,0.024
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+ ds005697,50,50,1,"65,69",1000,77.689
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+ ds004350,240,24,5,64,256,41.265
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+ ds004785,17,17,1,32,500,0.019
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+ ds004504,88,88,1,19,500,19.608
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+ ds004635,55,55,1,129,1000,20.068
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+ ds005787,448,19,1,"64,66","1000,500",23.733
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+ ds005079,60,1,15,65,500,3.25
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+ ds005342,32,32,1,17,250,33.017
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+ ds005034,100,25,2,129,1000,37.525
40
+ ds002680,350,14,1,31,1000,21.244
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+ ds003805,1,1,1,19,500,0.033
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+ ds003838,130,65,2,63,1000,136.757
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+ ds002691,20,20,1,32,250,6.721
44
+ ds003690,375,75,3,"64,66",500,46.771
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+ ds004040,4,2,1,64,512,4.229
46
+ ds003061,39,13,1,79,256,8.196
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+ ds005672,3,3,1,"65,69",1000,4.585
48
+ ds005410,81,81,1,63,1000,22.976
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+ ds003753,25,25,1,64,500,10.104
50
+ ds005565,24,24,1,,500,11.436
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+ ds002893,52,49,1,33,"250,250.0293378038558",36.114
52
+ ds002578,2,2,1,256,256,1.455
53
+ ds005089,36,36,1,63,1000,68.82
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+ ds003822,25,25,1,64,500,12.877
55
+ ds003670,62,25,1,32,2000,72.772
56
+ ds005048,35,35,1,,250,5.203
57
+ ds004574,146,146,1,"63,64,66",500,31.043
58
+ ds004519,40,40,1,62,250,0.067
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+ ds004602,546,182,3,128,"250,500",87.11
60
+ ds004784,6,1,6,128,512,0.518
61
+ ds004771,61,61,1,34,256,0.022
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+ ds003518,137,110,1,64,500,89.888
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+ ds005207,39,20,1,"6,10,12,14,15,16,17,18","128,250",422.881
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+ ds005866,60,60,1,,500,15.976
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+ ds003523,221,91,1,64,500,84.586
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+ ds004347,48,24,1,64,"128,512",6.389
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+ ds004588,42,42,1,24,300,4.957
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+ ds005811,448,19,1,62,"1000,500",23.733
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+ ds003987,69,23,1,64,500.0930232558139,52.076
70
+ ds004317,50,50,1,60,500,37.767
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+ ds004033,36,18,2,64,500,42.645
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+ ds004315,50,50,1,60,500,21.104
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+ ds003474,122,122,1,64,500,36.61
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+ ds003509,84,56,1,64,500,48.535
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+ ds005868,48,48,1,,500,13.094
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+ ds003516,25,25,1,47,500,22.57
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+ ds004942,62,62,1,65,1000,28.282
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+ ds004348,18,9,2,34,200,35.056
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+ ds004625,543,32,9,120,500,28.397
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+ ds003517,34,17,1,64,500,13.273
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+ ds004368,40,39,1,63,128,0.033
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+ ds004584,149,149,1,"63,64,66",500,6.641
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+ ds003506,84,56,1,64,500,35.381
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+ ds003570,40,40,1,64,2048,26.208
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+ ds003490,75,50,1,64,500,12.76
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+ ds004117,85,23,1,69,"1000,250,500,500.059",15.941
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+ ds004505,25,25,1,120,250,30.398
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+ ds004580,147,147,1,"63,64,66",500,36.514
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+ ds004532,137,110,1,64,500,49.651
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+ ds004902,218,71,2,61,"500,5000",18.118
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+ ds004295,26,26,1,66,"1024,512",34.313
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+ ds003519,54,27,1,64,500,20.504
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+ ds003458,23,23,1,64,500,10.447
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+ ds003004,34,34,1,"134,180,189,196,201,206,207,208,209,211,212,213,214,215,218,219,220,221,222,223,224,226,227,229,231,232,235",256,49.072
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+ ds004200,20,20,1,37,1000,14.123
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+ ds004015,36,36,1,18,500,47.29
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+ ds004595,53,53,1,64,500,17.078
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+ ds004626,52,52,1,68,1000,21.359
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+ ds004475,30,30,1,"113,115,118,119,120,122,123,124,125,126,127,128",512,26.899
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+ ds004515,54,54,1,64,500,20.61
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+ ds004883,516,172,3,128,500,137.855
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+ ds003739,120,30,4,128,256,20.574
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+ ds004389,260,26,4,42,10000,30.932
104
+ ds004367,40,40,1,68,1200,24.81
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+ ds004369,41,41,1,4,500,37.333
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+ ds004579,139,139,1,"63,64,66",500,55.703
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+ ds005416,23,23,1,64,1000,24.68
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+ ds001785,54,18,3,63,"1000,1024",14.644
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+ ds001971,273,20,1,108,512,46.183
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+ ds004388,399,40,3,67,10000,43.327
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+ ds003478,243,122,1,64,500,23.57
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+ ds004306,15,12,1,124,1024,18.183
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+ ds005305,165,165,1,64,"2048,512",14.136
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+ ds005114,223,91,1,64,500,125.701
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+ ds003039,16,16,1,64,500,14.82
116
+ ds003602,699,118,6,35,1000,159.35
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+ ds003655,156,156,1,19,500,130.923
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+ ds003522,200,96,1,64,500,57.079
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+ ds003801,20,20,1,24,250,13.689
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+ ds005296,62,62,1,,500,37.205
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+ ds004561,23,23,1,62,10000,11.379
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+ ds005131,63,58,2,64,500,52.035
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+ ds005028,66,11,3,,,0.0
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+ ds005170,225,5,1,,,0.0
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+ ds004840,51,9,3,8,"1024,256,512",11.306
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+ ds004718,51,51,1,64,1000,21.836
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+ ds002725,105,21,5,30,1000,0.0
128
+ ds004408,380,19,1,128,512,20.026
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+ ds004796,235,79,3,,1000,0.0
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+ ds004511,134,45,3,139,3000,48.922
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+ ds004817,20,20,1,63,1000,0.0
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+ ds003190,280,19,1,0,256,29.891
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+ ds004917,24,24,1,,,0.0
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+ ds004357,16,16,1,63,1000,0.0
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+ ds005397,26,26,1,64,500,27.923
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+ ds003846,60,19,1,64,500,24.574
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+ ds004024,497,13,3,64,20000,55.503
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+ ds005815,137,26,4,30,"1000,500",38.618
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+ ds005429,61,15,3,64,"2500,5000",14.474
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+ ds003702,47,47,1,61,500,0.0
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+ ds004577,130,103,1,"19,21,24",200,22.974
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+ ds003574,18,18,1,64,500,0.0
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+ ds005779,250,19,16,"64,67,70",5000,16.65
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+ ds005185,356,20,3,8,500,0.0
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+ ds001787,40,24,1,64,256,27.607
146
+ ds003505,37,19,2,128,2048,0.0
147
+ ds005340,15,15,1,2,10000,35.297
148
+ ds005363,43,43,1,64,1000,43.085
149
+ ds005121,39,34,1,58,512,41.498
150
+ ds004256,53,53,2,64,500,42.337
151
+ ds005420,72,37,2,20,500,5.485
152
+ ds002034,167,14,4,64,512,37.248
153
+ ds003825,50,50,1,"63,128",1000,0.0
154
+ ds004587,114,103,1,59,10000,25.491
155
+ ds004598,20,9,1,,10000,0.0
156
+ ds005383,240,30,1,30,200,8.327
157
+ ds003195,20,10,2,19,200,4.654
158
+ ds005403,32,32,1,62,10000,13.383
159
+ ds004621,167,42,4,,1000,0.0
160
+ ds005863,357,127,4,27,500,0.0
161
+ ds005594,16,16,1,64,1000,12.934
162
+ ds002336,54,10,6,,5000,0.0
163
+ ds004043,20,20,1,63,1000,0.0
164
+ ds005106,42,42,1,32,500,0.012
165
+ ds004284,18,18,1,129,1000,9.454
166
+ ds005620,202,21,3,"64,65",5000,21.811
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+ ds002720,165,18,10,19,1000,0.0
168
+ ds005307,73,7,1,"72,104",10000,1.335
169
+ ds002094,43,20,3,30,5000,18.593
170
+ ds002833,80,20,1,257,1000,11.604
171
+ ds002218,18,18,1,0,256,16.52
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+ ds005021,36,36,1,64,1024,0.0
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+ ds004264,21,21,1,31,1000,0.0
174
+ ds004446,237,30,1,129,1000,33.486
175
+ ds004980,17,17,1,64,"499.9911824,499.9912809,499.991385,499.9914353,499.9914553,499.9915179,499.9917272,499.9917286,499.9917378,499.9919292,499.9919367,499.9923017,499.9923795,500",36.846
176
+ ds002722,94,19,5,32,1000,0.0
177
+ ds003944,82,82,1,61,"1000,3000.00030000003",6.999
178
+ ds004279,60,56,1,64,1000,53.729
179
+ ds005876,29,29,1,32,1000,16.017
180
+ ds003816,1077,48,8,127,1000,159.313
181
+ ds005385,3264,608,2,64,1000,169.62
182
+ ds004572,516,52,10,58,1000,52.624
183
+ ds005095,48,48,1,63,1000,16.901
184
+ ds004460,40,20,1,160,1000,27.494
185
+ ds005189,30,30,1,61,1000,0.0
186
+ ds005274,22,22,1,6,500,0.0
187
+ ds004075,116,29,4,,1000,0.0
188
+ ds004447,418,22,1,"128,129",1000,23.554
189
+ ds004952,245,10,1,128,1000,123.411
190
+ ds002724,96,10,4,32,1000,0.0
191
+ ds005571,45,24,2,64,5000,0.0
192
+ ds004262,21,21,1,31,1000,0.0
193
+ ds005273,33,33,1,63,1000,58.055
194
+ ds004520,33,33,1,62,250,0.055
195
+ ds004444,465,30,1,129,1000,55.687
196
+ ds004582,73,73,1,59,10000,34.244
197
+ ds002723,44,8,6,32,1000,0.0
198
+ ds003751,38,38,1,128,250,19.95
199
+ ds003421,80,20,1,257,1000,11.604
200
+ ds002158,117,20,1,,,0.0
201
+ ds004951,23,11,1,63,1000,29.563
202
+ ds004802,38,38,1,65,"2048,512",0.0
203
+ ds004816,20,20,1,63,1000,0.0
204
+ ds005873,2850,125,1,2,256,11935.09
205
+ ds003194,29,15,2,"19,21",200,7.178
206
+ ds004356,24,22,1,34,10000,0.0
207
+ ds004381,437,18,1,"4,5,7,8,10",20000,11.965
208
+ ds004196,4,4,1,64,512,1.511
209
+ ds005692,59,30,1,24,5000,112.206
210
+ ds002338,85,17,4,,5000,0.0
211
+ ds004022,21,7,1,"16,18",500,0.0
212
+ ds004603,37,37,1,64,1024,30.653
213
+ ds004752,136,15,1,"0,8,10,19,20,21,23","200,2000,4000,4096",0.302
214
+ ds003768,255,33,2,,,0.0
215
+ ds003947,61,61,1,61,"1000,3000.00030000003",5.266
216
+ ds005530,21,17,1,10,500,154.833
217
+ ds005555,256,128,1,"2,8,9,11,12,13",256,2002.592
218
+ ds004477,9,9,1,79,2048,13.557
219
+ ds005688,89,20,5,4,"10000,20000",2.502
220
+ ds003766,124,31,4,129,1000,39.973
221
+ ds005540,103,59,1,64,"1200,600",0.0
222
+ ds004152,21,21,1,31,1000,0.0
223
+ ds003626,30,10,1,,,0.0
224
+ ds002814,168,21,1,68,1200,0.0
225
+ ds003645,108,18,1,,,0.0
226
+ ds005586,23,23,1,60,1000,33.529
227
+ ds003810,50,10,1,15,125,0.0
228
+ ds003969,392,98,4,64,"1024,2048",66.512
229
+ ds004000,86,43,2,128,2048,0.0
230
+ ds004995,20,20,1,,,0.0
231
+ ds003638,57,57,1,64,512,40.597
232
+ ds004521,34,34,1,62,250,0.057
233
+ ds001849,120,20,1,30,5000,0.0
234
+ ds004252,1,1,1,,,0.0
235
+ ds004448,280,56,1,129,1000,43.732
236
+ ds005795,39,34,2,72,500,0.0
237
+ ds004018,32,16,1,63,1000,0.0
238
+ ds004324,26,26,1,28,500,19.216
239
+ ds003887,24,24,1,128,1000,0.0
240
+ ds004860,31,31,1,32,"2048,512",0.0
241
+ ds002721,185,31,6,19,1000,0.0
242
+ ds003555,30,30,1,,1024,0.0
243
+ ds005486,445,159,1,,"25000,5000",0.0
244
+ ds005520,69,23,3,67,1000,60.73
245
+ ds005262,186,12,1,,,0.0
246
+ ds002778,46,31,1,40,512,2.518
247
+ ds003885,24,24,1,128,1000,0.0
248
+ ds005406,29,29,1,63,1000,15.452
249
+ ds003710,48,13,1,32,5000,9.165
250
+ ds003343,59,20,1,16,500,6.551
251
+ ds005345,26,26,1,64,500,0.0
252
+ ds004067,84,80,1,63,2000,0.0
253
+ ds001810,263,47,1,64,512,91.205
254
+ ds005515,2516,533,8,129,500,198.849
255
+ ds005516,3397,430,8,129,500,256.932
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: eegdash
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- Version: 0.3.3.dev178374711
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+ Version: 0.3.4
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  Summary: EEG data for machine learning
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5
  Author-email: Young Truong <dt.young112@gmail.com>, Arnaud Delorme <adelorme@gmail.com>, Aviv Dotan <avivd220@gmail.com>, Oren Shriki <oren70@gmail.com>, Bruno Aristimunha <b.aristimunha@gmail.com>
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  License-Expression: GPL-3.0-only
@@ -1,8 +1,9 @@
1
- eegdash/__init__.py,sha256=0mIAi_DrGf-_UAbzm9XTAKcQ7jivZPeCgzSHxHK_1w4,247
1
+ eegdash/__init__.py,sha256=pUei5a6daH-lNgSa4I1nUI9Et64FuXJf2wP6baNeqRc,234
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  eegdash/api.py,sha256=OqOZ27GYURSAZwTQHSs0QcW_6Mq1i_5XHP6KMcihb8A,27295
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3
  eegdash/data_config.py,sha256=OS6ERO-jHrnEOfMJUehY7ieABdsRw_qWzOKJ4pzSfqw,1323
4
- eegdash/data_utils.py,sha256=8Jb_94uVbdknNPpx3GBl4dCDYUIJNzl3zkLwbfH90N4,26052
4
+ eegdash/data_utils.py,sha256=_dycnPmGfTbYs7bc6edHxUn_m01dLYtp92_k44ffEoY,26475
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  eegdash/dataset.py,sha256=ooLoxMFy2I8BY9gJl6ncTp_Gz-Rq0Z-o4NJyyomxLcU,2670
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+ eegdash/dataset_summary.csv,sha256=3an_As8PpYzScmDfkvmCWc2-tYZ-k6l2q3i6MOwJOlo,8925
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  eegdash/mongodb.py,sha256=GD3WgA253oFgpzOHrYaj4P1mRjNtDMT5Oj4kVvHswjI,2006
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  eegdash/preprocessing.py,sha256=7S_TTRKPKEk47tTnh2D6WExBt4cctAMxUxGDjJqq5lU,2221
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  eegdash/registry.py,sha256=u2TqnMZPhnhItFupPbV50QGemeImnuc18wnEkKzLtL8,2118
@@ -22,8 +23,8 @@ eegdash/features/feature_bank/dimensionality.py,sha256=j_Ds71Y1AbV2uLFQj8EuXQ4kz
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  eegdash/features/feature_bank/signal.py,sha256=3Tb8z9gX7iZipxQJ9DSyy30JfdmW58kgvimSyZX74p8,3404
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  eegdash/features/feature_bank/spectral.py,sha256=bNB7skusePs1gX7NOU6yRlw_Gr4UOCkO_ylkCgybzug,3319
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  eegdash/features/feature_bank/utils.py,sha256=DGh-Q7-XFIittP7iBBxvsJaZrlVvuY5mw-G7q6C-PCI,1237
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- eegdash-0.3.3.dev178374711.dist-info/licenses/LICENSE,sha256=asisR-xupy_NrQBFXnx6yqXeZcYWLvbAaiETl25iXT0,931
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- eegdash-0.3.3.dev178374711.dist-info/METADATA,sha256=YNAvqMETaTVuhHSR05-XHA1jqmIm7jhFqZCYAipV9Ao,10347
27
- eegdash-0.3.3.dev178374711.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
28
- eegdash-0.3.3.dev178374711.dist-info/top_level.txt,sha256=zavO69HQ6MyZM0aQMR2zUS6TAFc7bnN5GEpDpOpFZzU,8
29
- eegdash-0.3.3.dev178374711.dist-info/RECORD,,
26
+ eegdash-0.3.4.dist-info/licenses/LICENSE,sha256=asisR-xupy_NrQBFXnx6yqXeZcYWLvbAaiETl25iXT0,931
27
+ eegdash-0.3.4.dist-info/METADATA,sha256=pwVLAo2Xy7g8J9yao9YiqkPcTZ0UkNPam5GXmr0LmtI,10334
28
+ eegdash-0.3.4.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
29
+ eegdash-0.3.4.dist-info/top_level.txt,sha256=zavO69HQ6MyZM0aQMR2zUS6TAFc7bnN5GEpDpOpFZzU,8
30
+ eegdash-0.3.4.dist-info/RECORD,,