edms 0.0.post176__py3-none-any.whl

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Files changed (39) hide show
  1. edms/__init__.py +0 -0
  2. edms/__main__.py +4 -0
  3. edms/_version.py +34 -0
  4. edms/bio/__init__.py +0 -0
  5. edms/bio/clone.py +778 -0
  6. edms/bio/fastq.py +3630 -0
  7. edms/bio/genbank.py +150 -0
  8. edms/bio/ngs.py +650 -0
  9. edms/bio/pe.py +1941 -0
  10. edms/bio/pegLIT.py +249 -0
  11. edms/bio/primedesign.py +1819 -0
  12. edms/bio/qPCR.py +116 -0
  13. edms/bio/sanger.py +358 -0
  14. edms/bio/signature.py +256 -0
  15. edms/bio/transfect.py +230 -0
  16. edms/config.py +122 -0
  17. edms/dat/__init__.py +0 -0
  18. edms/dat/cosmic.py +311 -0
  19. edms/dat/cvar.py +170 -0
  20. edms/dat/ncbi.py +254 -0
  21. edms/gen/__init__.py +0 -0
  22. edms/gen/cli.py +160 -0
  23. edms/gen/image.py +176 -0
  24. edms/gen/io.py +474 -0
  25. edms/gen/plot.py +1298 -0
  26. edms/gen/stat.py +358 -0
  27. edms/gen/tidy.py +380 -0
  28. edms/main.py +1617 -0
  29. edms/resources/RE_type_IIS.csv +4 -0
  30. edms/resources/UMI_15_hamming_4_yield_18687_Esp3I_0.csv +18688 -0
  31. edms/resources/UMI_15_hamming_4_yield_19356.csv +19357 -0
  32. edms/resources/edms_pcr.csv +13 -0
  33. edms/utils.py +99 -0
  34. edms-0.0.post176.dist-info/METADATA +157 -0
  35. edms-0.0.post176.dist-info/RECORD +39 -0
  36. edms-0.0.post176.dist-info/WHEEL +5 -0
  37. edms-0.0.post176.dist-info/entry_points.txt +2 -0
  38. edms-0.0.post176.dist-info/licenses/LICENSE +21 -0
  39. edms-0.0.post176.dist-info/top_level.txt +1 -0
edms/__init__.py ADDED
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edms/__main__.py ADDED
@@ -0,0 +1,4 @@
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+ from .main import main
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+
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+ if __name__ == "__main__":
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+ main()
edms/_version.py ADDED
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+ # file generated by setuptools-scm
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+ # don't change, don't track in version control
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+
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+ __all__ = [
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+ "__version__",
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+ "__version_tuple__",
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+ "version",
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+ "version_tuple",
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+ "__commit_id__",
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+ "commit_id",
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+ ]
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+
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+ TYPE_CHECKING = False
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+ if TYPE_CHECKING:
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+ from typing import Tuple
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+ from typing import Union
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+
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+ VERSION_TUPLE = Tuple[Union[int, str], ...]
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+ COMMIT_ID = Union[str, None]
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+ else:
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+ VERSION_TUPLE = object
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+ COMMIT_ID = object
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+
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+ version: str
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+ __version__: str
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+ __version_tuple__: VERSION_TUPLE
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+ version_tuple: VERSION_TUPLE
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+ commit_id: COMMIT_ID
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+ __commit_id__: COMMIT_ID
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+
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+ __version__ = version = '0.0.post176'
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+ __version_tuple__ = version_tuple = (0, 0, 'post176')
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+
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+ __commit_id__ = commit_id = None
edms/bio/__init__.py ADDED
File without changes