ebi-eva-common-pyutils 0.6.15__1-py3-none-any.whl → 0.6.17__1-py3-none-any.whl

ebi_eva_common_pyutils/spreadsheet/metadata_xlsx_utils.py

@@ -0,0 +1,15 @@
+import re
+
+from openpyxl.reader.excel import load_workbook
+
+
+def metadata_xlsx_version(metadata_xlsx):
+    workbook = load_workbook(metadata_xlsx)
+    try:
+        instructions_sheet = workbook['PLEASE READ FIRST']
+        xlsx_sheet_version_value = instructions_sheet[3][0].value
+        match = re.search(r'(\d+\.\d+\.\d+)', '' if xlsx_sheet_version_value is None else xlsx_sheet_version_value)
+        xlsx_version = match.group(1) if match else None
+    except (KeyError, IndexError):
+        xlsx_version = None
+    return xlsx_version

{ebi_eva_common_pyutils-0.6.15.dist-info → ebi_eva_common_pyutils-0.6.17.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: ebi-eva-common-pyutils
-Version: 0.6.15
+Version: 0.6.17
 Summary: EBI EVA - Common Python Utilities
 Home-page: https://github.com/EBIVariation/eva-common-pyutils
 License: Apache
@@ -11,11 +11,12 @@ Classifier: Topic :: Software Development :: Build Tools
 Classifier: License :: OSI Approved :: Apache Software License
 Classifier: Programming Language :: Python :: 3
 License-File: LICENSE
-Requires-Dist: requests
-Requires-Dist: lxml
-Requires-Dist: pyyaml
-Requires-Dist: cached-property
-Requires-Dist: retry
+Requires-Dist: requests (==2.*)
+Requires-Dist: lxml (==4.*,>4.9)
+Requires-Dist: pyyaml (==6.*)
+Requires-Dist: cached-property (==1.5.*)
+Requires-Dist: retry (==0.*,>0.9)
+Requires-Dist: openpyxl (==3.*)
 Provides-Extra: eva-internal
 Requires-Dist: psycopg2-binary ; extra == 'eva-internal'
 Requires-Dist: pymongo ; extra == 'eva-internal'

{ebi_eva_common_pyutils-0.6.15.dist-info → ebi_eva_common_pyutils-0.6.17.dist-info}/RECORD

@@ -16,11 +16,13 @@ ebi_eva_common_pyutils/contig_alias/contig_alias.py,sha256=7tQXljEJtRCMs_JPrglYv
 ebi_eva_common_pyutils/reference/__init__.py,sha256=NsDjGCu2H2CZLOPaEL6GCoZo5ND_EA9RFmbzGfpSXRQ,134
 ebi_eva_common_pyutils/reference/assembly.py,sha256=FK4zsvg4_GDeKd9z2z5ZeM9R84TsusgQYdMOGuggQU0,12162
 ebi_eva_common_pyutils/reference/sequence.py,sha256=bg96QcuB-oytQYpaUkV10OzM_RIFhxsy6t3PQOg2Gy0,3911
+ebi_eva_common_pyutils/spreadsheet/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+ebi_eva_common_pyutils/spreadsheet/metadata_xlsx_utils.py,sha256=0yOoV5rfLc5IWPAShSClaAOmaGfJuGZjJOnREfZBtFQ,540
 ebi_eva_common_pyutils/taxonomy/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 ebi_eva_common_pyutils/taxonomy/taxonomy.py,sha256=aXmRQ3NAaJotwmmOA2-u2XtcUT6iih-0_e-3QOxynoA,2578
 ebi_eva_common_pyutils/variation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 ebi_eva_common_pyutils/variation/contig_utils.py,sha256=kMNEW_P2yPnd8Xx1tep19hy5ee7ojxz6ZOO1grTQsRQ,5230
-ebi_eva_common_pyutils-0.6.15.data/scripts/archive_directory.py,sha256=0lWJ0ju_AB2ni7lMnJXPFx6U2OdTGbe-WoQs-4BfKOM,4976
+ebi_eva_common_pyutils-0.6.17.data/scripts/archive_directory.py,sha256=0lWJ0ju_AB2ni7lMnJXPFx6U2OdTGbe-WoQs-4BfKOM,4976
 ebi_eva_internal_pyutils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 ebi_eva_internal_pyutils/archive_directory.py,sha256=IxVEfh_gaCiT652k0Q_-58fonRusy1yzXu7BCO8yVLo,4989
 ebi_eva_internal_pyutils/config_utils.py,sha256=EGRC5rsmU_ug7OY9-t1UW1XZXRsauSyZB9xPcBux8ts,7909
@@ -32,8 +34,8 @@ ebi_eva_internal_pyutils/mongodb/__init__.py,sha256=0oyTlkYZCV7udlPl09Zl-sDyE3c9
 ebi_eva_internal_pyutils/mongodb/mongo_database.py,sha256=kesaJaaxYFeF_uYZBgL8tbufGKUXll7bXb4WlOS9vKM,9596
 ebi_eva_internal_pyutils/nextflow/__init__.py,sha256=OOiJS8jZOz98q0t77NNog7aI_fFrVxi4kGmiSskuAqM,122
 ebi_eva_internal_pyutils/nextflow/nextflow_pipeline.py,sha256=ew623hhK8jmFLQjJwLZbgBmW9RTiJBEULVqHfIUv_dc,10114
-ebi_eva_common_pyutils-0.6.15.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-ebi_eva_common_pyutils-0.6.15.dist-info/METADATA,sha256=Fqi42q79u7hBbyYhAzPAqqKu9UlxjuhK_8Ux0Tj_VSA,825
-ebi_eva_common_pyutils-0.6.15.dist-info/WHEEL,sha256=2wepM1nk4DS4eFpYrW1TTqPcoGNfHhhO_i5m4cOimbo,92
-ebi_eva_common_pyutils-0.6.15.dist-info/top_level.txt,sha256=sXoiqiGU8vlMQpFWDlKrekxhlusk06AhkOH3kSvDT6c,48
-ebi_eva_common_pyutils-0.6.15.dist-info/RECORD,,
+ebi_eva_common_pyutils-0.6.17.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+ebi_eva_common_pyutils-0.6.17.dist-info/METADATA,sha256=xdXBYa6ma2iy0NDeoYjrral5mPQnsC-F63kQetBZx5Q,909
+ebi_eva_common_pyutils-0.6.17.dist-info/WHEEL,sha256=2wepM1nk4DS4eFpYrW1TTqPcoGNfHhhO_i5m4cOimbo,92
+ebi_eva_common_pyutils-0.6.17.dist-info/top_level.txt,sha256=sXoiqiGU8vlMQpFWDlKrekxhlusk06AhkOH3kSvDT6c,48
+ebi_eva_common_pyutils-0.6.17.dist-info/RECORD,,