dsp-tools 0.9.13__py3-none-any.whl → 18.3.0.post13__py3-none-any.whl

knora/dsplib/models/ontology.py

@@ -1,448 +0,0 @@
-import json
-import copy
-from pystrict import strict
-from typing import List, Set, Dict, Tuple, Optional, Any, Union
-from urllib.parse import quote_plus
-
-from .connection import Connection
-from .helpers import Actions, BaseError, Context, LastModificationDate, OntoInfo
-from .model import Model
-from .project import Project
-from .propertyclass import PropertyClass
-from .resourceclass import ResourceClass
-
-class SetEncoder(json.JSONEncoder):
-    def default(self, obj):
-        if isinstance(obj, set):
-            return list(obj)
-        elif isinstance(obj, Context):
-            return obj.toJsonObj()
-        elif isinstance(obj, OntoInfo):
-            return {"iri": obj.iri, "hashtag": obj.hashtag}
-        return json.JSONEncoder.default(self, obj)
-
-
-"""
-This model implements the handling of ontologies. It is to note that ResourceClasses, PropertyClasses
-as well as the assignment of PropertyCLasses to the ResourceClasses (with a given cardinality)
-is handeld in "cooperation" with the propertyclass.py (PropertyClass) and resourceclass.py (ResourceClass
-and HasProperty) modules.
-
-_Note_: All modifications to an ontology
-
-CREATE:
-    * Instantiate a new object of the Ontology class with all required parameters
-    * Call the ``create``-method on the instance to create the ontology withing the backend
-
-READ:
-    * Instantiate a new object with ``id``(IRI of ontology) given
-    * Call the ``read``-method on the instance. Reading the ontology also reads all
-      associated PropertyClasses and ResourceClasses as well as the assignments.
-    * Access the information that has been provided to the instance
-
-UPDATE:
-    * You need an instance of an existing Ontology by reading an instance
-    * Change the attributes by assigning the new values
-    * Call the ``update```method on the instance
-
-DELETE
-    * Instantiate a new objects with ``id``(IRI of group) given, or use any instance that has the id set,
-      that is, that You've read before
-    * Call the ``delete``-method on the instance
-
-"""
-@strict
-class Ontology(Model):
-    _id: str
-    _project: str
-    _name: str
-    _label: str
-    _comment: str
-    _lastModificationDate: LastModificationDate
-    _resource_classes: List[ResourceClass]
-    _property_classes: List[PropertyClass]
-    _context: Context
-    _skiplist: List[str]
-
-    def __init__(self,
-                 con:  Connection,
-                 id: Optional[str] = None,
-                 project: Optional[Union[str, Project]] = None,
-                 name: Optional[str] = None,
-                 label: Optional[str] = None,
-                 comment: Optional[str] = None,
-                 lastModificationDate: Optional[Union[str, LastModificationDate]] = None,
-                 resource_classes: List[ResourceClass] = [],
-                 property_classes: List[PropertyClass] = [],
-                 context: Context = None):
-        super().__init__(con)
-        self._id = id
-        if isinstance(project, Project):
-            self._project = project.id
-        else:
-            self._project = project
-        self._name = name
-        self._label = label
-        self._comment = comment
-        if lastModificationDate is None:
-            self._lastModificationDate = None
-        elif isinstance(lastModificationDate, LastModificationDate):
-            self._lastModificationDate = lastModificationDate
-        else:
-            self._lastModificationDate = LastModificationDate(lastModificationDate)
-        self._resource_classes = resource_classes
-        self._property_classes = property_classes
-        self._context = context if context is not None else Context()
-        self._skiplist = []
-
-    @property
-    def id(self) -> str:
-        return self._id
-
-    @id.setter
-    def id(self, value: str):
-        raise BaseError('Ontology id cannot be modified!')
-
-    @property
-    def project(self) -> str:
-        return self._project
-
-    @project.setter
-    def project(self, value: str):
-        raise BaseError("An ontology's project cannot be modified!")
-
-    @property
-    def name(self) -> str:
-        return self._name
-
-    @name.setter
-    def name(self, value: str):
-        raise BaseError("An ontology's name cannot be modified!")
-
-    @property
-    def label(self):
-        return self._label
-
-    @label.setter
-    def label(self, value: str):
-        self._label = str(value)
-        self._changed.add('label')
-
-    @property
-    def comment(self):
-        return self._comment
-
-    @comment.setter
-    def comment(self, value: str):
-        self._comment = str(value)
-        self._changed.add('comment')
-
-    @property
-    def lastModificationDate(self) -> LastModificationDate:
-        return self._lastModificationDate
-
-    @lastModificationDate.setter
-    def lastModificationDate(self, value: Union[str, LastModificationDate]):
-        self._lastModificationDate = LastModificationDate(value)
-
-    @property
-    def resource_classes(self) -> List[ResourceClass]:
-        return self._resource_classes
-
-    @resource_classes.setter
-    def resource_classes(self, value: List[ResourceClass]) -> None:
-        self._resource_classes = value
-
-    def addResourceClass(self, resourceclass: ResourceClass, create: bool = False) -> Tuple[int, ResourceClass]:
-        if create:
-            print('Calling resourceclass.create in Ontology.addResourceClass')
-            lmd, resourceclass = resourceclass.create(self._lastModificationDate)
-            self._lastModificationDate = lmd
-        self._resource_classes.append(resourceclass)
-        index = len(self._resource_classes) - 1
-        return index, resourceclass
-
-    def updateResourceClass(self, index: int, resourceclass: ResourceClass) -> ResourceClass:
-        lmd, resourceclass = resourceclass.update(self._lastModificationDate)
-        self._lastModificationDate = lmd
-        self._resource_classes[index] = resourceclass
-        return resourceclass
-
-    def removeResourceClass(self, index: int, erase: bool = False) -> None:
-        if erase:
-            lmd = self._resource_classes[index].delete(self._lastModificationDate)
-            self._lastModificationDate = lmd
-        del self._resource_classes[index]
-
-
-    @property
-    def property_classes(self) -> List[PropertyClass]:
-        return self._property_classes
-
-    @property_classes.setter
-    def property_classes(self, value: List[PropertyClass]):
-        self._property_classes = value
-
-    def addPropertyClass(self, propclass: PropertyClass, create: bool = False) -> Tuple[int, ResourceClass]:
-        if create:
-            lmd, resourceclass = propclass.create(self._lastModificationDate)
-            self._lastModificationDate = lmd
-        self._property_classes.append(resourceclass)
-        index = len(self._property_classes) - 1
-        return index, propclass
-
-    def updatePropertyClass(self, index: int, propclass: PropertyClass) -> PropertyClass:
-        lmd, propclass = propclass.update(self._lastModificationDate)
-        self._lastModificationDate = lmd
-        self._property_classes[index] = propclass
-        return propclass
-
-    def removePropertyClass(self, index: int, erase: bool = False) -> None:
-        if erase:
-            lmd = self._property_classes[index].delete(self._lastModificationDate)
-            self._lastModificationDate = lmd
-        del self._property_classes[index]
-
-    @property
-    def context(self):
-        return self._context
-
-    @context.setter
-    def context(self, value: Context):
-        raise BaseError('"Context" cannot be set!')
-
-    @classmethod
-    def fromJsonObj(cls, con: Connection, json_obj: Any) -> 'Ontology':
-        #
-        # First let's get the ID (IRI) of the ontology
-        #
-        id = json_obj.get('@id')
-        if id is None:
-            raise BaseError('Ontology id is missing')
-
-        #
-        # evaluate the JSON-LD context to get the proper prefixes
-        #
-        context = Context(json_obj.get('@context'))
-        onto_name = id.split('/')[-2]
-        context.add_context(onto_name, id + '#')
-        rdf = context.prefix_from_iri("http://www.w3.org/1999/02/22-rdf-syntax-ns#")
-        rdfs = context.prefix_from_iri("http://www.w3.org/2000/01/rdf-schema#")
-        owl = context.prefix_from_iri("http://www.w3.org/2002/07/owl#")
-        xsd = context.prefix_from_iri("http://www.w3.org/2001/XMLSchema#")
-        knora_api = context.prefix_from_iri("http://api.knora.org/ontology/knora-api/v2#")
-        salsah_gui = context.prefix_from_iri("http://api.knora.org/ontology/salsah-gui/v2#")
-        this_onto = context.prefix_from_iri(id + "#")
-
-        label = json_obj.get(rdfs + ':label')
-        if label is None:
-            raise BaseError('Ontology label is missing')
-        comment = json_obj.get(rdfs + ':comment')
-        if json_obj.get(knora_api + ':attachedToProject') is None:
-            raise BaseError('Ontology not attached to a project')
-        if json_obj[knora_api + ':attachedToProject'].get('@id') is None:
-            raise BaseError('Ontology not attached to a project')
-        project = json_obj[knora_api + ':attachedToProject']['@id']
-        tmp = json_obj.get(knora_api + ':lastModificationDate')
-        if tmp is not None:
-            last_modification_date = LastModificationDate(json_obj.get(knora_api + ':lastModificationDate'))
-        else:
-            last_modification_date = None
-        resource_classes = None
-        property_classes = None
-        if json_obj.get('@graph') is not None:
-            resclasses_obj = list(filter(lambda a: a.get(knora_api + ':isResourceClass') is not None, json_obj.get('@graph')))
-            resource_classes = list(map(lambda a: ResourceClass.fromJsonObj(con=con,
-                                                                            context=context,
-                                                                            json_obj=a), resclasses_obj))
-            standoffclasses_obj = list(filter(lambda a: a.get(knora_api + ':isStandoffClass') is not None, json_obj.get('@graph')))
-            # ToDo: parse standoff classes
-
-            properties_obj = list(filter(lambda a: a.get(knora_api + ':isResourceProperty') is not None, json_obj.get('@graph')))
-            property_classes = list(map(lambda a: PropertyClass.fromJsonObj(con=con,
-                                                                            context=context,
-                                                                            json_obj=a), properties_obj))
-        return cls(con=con,
-                   id=id,
-                   label=label,
-                   project=project,
-                   name=this_onto,  # TODO: corresponds the prefix always to the ontology name?
-                   comment=comment,
-                   lastModificationDate=last_modification_date,
-                   resource_classes=resource_classes,
-                   property_classes=property_classes,
-                   context=context)
-
-    @classmethod
-    def __oneOntologiesFromJsonObj(cls, con: Connection, json_obj: Any, context: Context) -> 'Ontology':
-        rdf = context.prefix_from_iri("http://www.w3.org/1999/02/22-rdf-syntax-ns#")
-        rdfs = context.prefix_from_iri("http://www.w3.org/2000/01/rdf-schema#")
-        owl = context.prefix_from_iri("http://www.w3.org/2002/07/owl#")
-        xsd = context.prefix_from_iri("http://www.w3.org/2001/XMLSchema#")
-        knora_api = context.prefix_from_iri("http://api.knora.org/ontology/knora-api/v2#")
-        salsah_gui = context.prefix_from_iri("http://api.knora.org/ontology/salsah-gui/v2#")
-        if json_obj.get('@type') != owl + ':Ontology':
-            return None
-        id = json_obj.get('@id')
-        if id is None:
-            raise BaseError('Ontology id is missing')
-        if json_obj.get(knora_api + ':attachedToProject') is None:
-            raise BaseError('Ontology not attached to a project (1)')
-        if json_obj[knora_api + ':attachedToProject'].get('@id') is None:
-            raise BaseError('Ontology not attached to a project (2)')
-        project = json_obj[knora_api + ':attachedToProject']['@id']
-        tmp = json_obj.get(knora_api + ':lastModificationDate')
-        if tmp is not None:
-            last_modification_date = LastModificationDate(json_obj.get(knora_api + ':lastModificationDate'))
-        else:
-            last_modification_date = None
-        label = json_obj.get(rdfs + ':label')
-        if label is None:
-            raise BaseError('Ontology label is missing')
-        comment = json_obj.get(rdfs + ':comment')
-        this_onto = id.split('/')[-2]
-        context2 = copy.deepcopy(context)
-        context2.add_context(this_onto, id)
-        return cls(con=con,
-                   id=id,
-                   label=label,
-                   project=project,
-                   name=this_onto,
-                   comment=comment,
-                   lastModificationDate=last_modification_date,
-                   context=context2)
-
-    @classmethod
-    def allOntologiesFromJsonObj(cls, con: Connection, json_obj: Any) -> List['Ontology']:
-        context = Context(json_obj.get('@context'))
-        rdf = context.prefix_from_iri("http://www.w3.org/1999/02/22-rdf-syntax-ns#")
-        rdfs = context.prefix_from_iri("http://www.w3.org/2000/01/rdf-schema#")
-        owl = context.prefix_from_iri("http://www.w3.org/2002/07/owl#")
-        xsd = context.prefix_from_iri("http://www.w3.org/2001/XMLSchema#")
-        knora_api = context.prefix_from_iri("http://api.knora.org/ontology/knora-api/v2#")
-        salsah_gui = context.prefix_from_iri("http://api.knora.org/ontology/salsah-gui/v2#")
-        ontos: List['Ontology'] = []
-        if json_obj.get('@graph') is not None:
-            for o in json_obj['@graph']:
-                ontos.append(Ontology.__oneOntologiesFromJsonObj(con, o, context))
-        else:
-            onto = Ontology.__oneOntologiesFromJsonObj(con, json_obj, context)
-            if onto is not None:
-                ontos.append(onto)
-        return ontos
-
-    def toJsonObj(self, action: Actions) -> Any:
-        rdf = self._context.prefix_from_iri("http://www.w3.org/1999/02/22-rdf-syntax-ns#")
-        rdfs = self._context.prefix_from_iri("http://www.w3.org/2000/01/rdf-schema#")
-        owl = self._context.prefix_from_iri("http://www.w3.org/2002/07/owl#")
-        xsd = self._context.prefix_from_iri("http://www.w3.org/2001/XMLSchema#")
-        knora_api = self._context.prefix_from_iri("http://api.knora.org/ontology/knora-api/v2#")
-        salsah_gui = self._context.prefix_from_iri("http://api.knora.org/ontology/salsah-gui/v2#")
-        # this_onto = self._context.prefixFromIri(self._id + "#")
-        tmp = {}
-        if action == Actions.Create:
-            if self._name is None:
-                raise BaseError('There must be a valid name given!')
-            if self._label is None:
-                raise BaseError('There must be a valid label given!')
-            if self._project is None:
-                raise BaseError('There must be a valid project given!')
-            tmp = {
-                knora_api + ":ontologyName": self._name,
-                knora_api + ":attachedToProject": {
-                    "@id": self._project
-                },
-                rdfs + ":label": self._label,
-                "@context": self._context.toJsonObj()
-            }
-            if self._comment is not None:
-                tmp[rdfs + ":comment"] = self._comment
-        elif action == Actions.Update:
-            if self._lastModificationDate is None:
-                raise BaseError("'last_modification_date' must be in ontology!")
-            tmp = {
-                '@id': self._id,
-                rdfs + ':label': self._label,
-                knora_api + ':lastModificationDate': self._lastModificationDate.toJsonObj(),
-                "@context": self._context.toJsonObj()
-            }
-            if self._label is not None and 'label' in self._changed:
-                tmp[rdfs + ':label'] = self._label
-            if self._comment is not None and 'comment' in self._changed:
-                tmp[rdfs + ':comment'] = self._comment
-        return tmp
-
-    def create(self, dumpjson: Optional[str] = None) -> 'Ontology':
-        jsonobj = self.toJsonObj(Actions.Create)
-        jsondata = json.dumps(jsonobj, cls=SetEncoder, indent=4)
-        result = self._con.post('/v2/ontologies', jsondata)
-        return Ontology.fromJsonObj(self._con, result)
-
-    def update(self) -> 'Ontology':
-        jsonobj = self.toJsonObj(Actions.Update)
-        jsondata = json.dumps(jsonobj, cls=SetEncoder, indent=4)
-        result = self._con.put('/v2/ontologies/metadata', jsondata, 'application/ld+json')
-        return Ontology.fromJsonObj(self._con, result)
-
-    def read(self) -> 'Ontology':
-        result = self._con.get('/v2/ontologies/allentities/' + quote_plus(self._id) + '?allLanguages=true')
-        return Ontology.fromJsonObj(self._con, result)
-
-    def delete(self) -> Optional[str]:
-        result = self._con.delete('/v2/ontologies/' + quote_plus(self._id),
-                                   params={'lastModificationDate': str(self._lastModificationDate)})
-        return result.get('knora-api:result')
-
-    @staticmethod
-    def getAllOntologies(con: Connection) -> List['Ontology']:
-        result = con.get('/v2/ontologies/metadata/')
-        return Ontology.allOntologiesFromJsonObj(con, result)
-
-    @staticmethod
-    def getProjectOntologies(con: Connection, project_id: str) -> List['Ontology']:
-        if project_id is None:
-            raise BaseError('Project ID must be defined!')
-        result = con.get('/v2/ontologies/metadata/' + quote_plus(project_id) + '?allLanguages=true')
-        return Ontology.allOntologiesFromJsonObj(con, result)
-
-    @staticmethod
-    def getOntologyFromServer(con: Connection, shortcode: str, name: str) -> 'Ontology':
-        result = con.get("/ontology/" + shortcode + "/" + name + "/v2")
-        return Ontology.fromJsonObj(con, result)
-
-    def createDefinitionFileObj(self):
-        ontology = {
-            "name": self._name,
-            "label": self._label,
-            "properties": [],
-            "resources": []
-        }
-        if self._comment is not None:
-            ontology["comment"] = self._comment
-        for prop in self._property_classes:
-            if "knora-api:hasLinkToValue" in prop.superproperties:
-                self._skiplist.append(self._name + ":" + prop.name)
-                continue
-            ontology["properties"].append(prop.createDefinitionFileObj(self.context, self._name))
-
-        for res in self._resource_classes:
-            ontology["resources"].append(res.createDefinitionFileObj(self.context, self._name, self._skiplist))
-
-        return ontology
-
-    def print(self) -> None:
-        print('Ontology Info:')
-        print('  Id:                   {}'.format(self._id))
-        print('  Label:                {}'.format(self._label))
-        print('  Name:                 {}'.format(self._name))
-        print('  Project:              {}'.format(self._project))
-        print('  LastModificationDate: {}'.format(str(self._lastModificationDate)))
-        print('  Property Classes:')
-        if self._property_classes:
-            for pc in self._property_classes:
-                pc.print(4)
-        print('  Resource Classes:')
-        if self._resource_classes:
-            for rc in self._resource_classes:
-                rc.print(4)
-

knora/dsplib/models/permission.py

@@ -1,112 +0,0 @@
-from enum import Enum, unique
-from typing import List, Set, Dict, Tuple, Optional, Any, Union, Type
-from pystrict import strict
-import re
-
-from dsplib.models.group import Group
-from dsplib.models.helpers import BaseError
-
-
-@unique
-class PermissionValue(Enum):
-    RV = 1
-    V = 2
-    M = 4
-    D = 8
-    CR = 16
-
-    def __str__(self):
-        tmp = {
-            1: 'RV',
-            2: 'V',
-            4: 'M',
-            8: 'D',
-            16: 'CR'
-        }
-        return tmp[self.value]
-
-
-@strict
-class PermissionsIterator:
-    _permissions: 'Permissions'
-    _group: List[str]
-    _index: int
-
-    def __init__(self, permissions: 'Permissions'):
-        self._permissions = permissions
-        self._index = 0
-
-    def __next__(self):
-        if len(self._permissions.permissions) == 0 and self._index == 0:
-            return None, None
-        elif self._index < len(self._permissions.permissions):
-            tmp = self._prefixes[self._index]
-            self._index += 1
-            return tmp, self._permissions.permissions[tmp]
-        else:
-            raise StopIteration
-
-
-@strict
-class Permissions:
-    _permissions: Union[Dict[PermissionValue, List[str]], None]
-
-    def __init__(self,
-                 permissions: Optional[Dict[PermissionValue, List[str]]] = None):
-        if permissions is None:
-            self._permissions = {}
-        else:
-            self._permissions = permissions
-
-    def __getitem__(self, key: PermissionValue) -> Union[List[str], None]:
-        return self._permissions.get(key)
-
-    def __setitem__(self, key: PermissionValue, value: List[str]) -> None:
-        self._permissions[key] = value
-
-    def __delitem__(self, key: PermissionValue) -> None:
-        del self._permissions[key]
-
-    def __missing__(self, key: PermissionValue) -> None:
-        return None
-
-    def __iter__(self) -> PermissionsIterator:
-        return PermissionsIterator(self)
-
-    def __contains__(self, key: PermissionValue) -> bool:
-        return key in self._permissions
-
-    def __str__(self):
-        tmpstr = ''
-        for permission, groups in self._permissions.items():
-            if tmpstr:
-                tmpstr += '|'
-            tmpstr += str(permission) + ' ' + ",".join(groups)
-        return tmpstr
-
-    def add(self, key: PermissionValue, val: str):
-        if self._permissions.get(key) is None:
-            self._permissions[key] = [val]
-        else:
-            self._permissions[key].append(val)
-
-    def toJsonLdObj(self):
-        tmpstr = ''
-        for permission, groups in self._permissions.items():
-            if tmpstr:
-                tmpstr += '|'
-            tmpstr += str(permission) + ' ' + ",".join(groups)
-        return tmpstr
-
-    @classmethod
-    def fromString(cls, permstr: str):
-        tmpstr = permstr.split('|')
-        permissions: Dict[PermissionValue, List[str]] = {}
-        for s in tmpstr:
-            key, *vals = re.split("[\\s,]+", s)
-            permissions[PermissionValue[key]] = vals
-        return cls(permissions)
-
-    @property
-    def permissions(self) -> Union[Dict[PermissionValue, List[str]], None]:
-        return self._permissions