dslighting 1.3.9__py3-none-any.whl → 1.7.6__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- dsat/runner.py +26 -18
- dslighting/__init__.py +7 -1
- dslighting/core/agent.py +160 -28
- dslighting/core/config_builder.py +1 -1
- dslighting/core/data_loader.py +259 -0
- dslighting/datasets/__init__.py +177 -0
- dslighting/datasets/bike-sharing-demand/sampleSubmission.csv +6494 -0
- dslighting/datasets/bike-sharing-demand/test.csv +2179 -0
- dslighting/datasets/bike-sharing-demand/test_answer.csv +2179 -0
- dslighting/datasets/bike-sharing-demand/train.csv +8709 -0
- dslighting/registry/3d-object-detection-for-autonomous-vehicles/checksums.yaml +6 -0
- dslighting/registry/3d-object-detection-for-autonomous-vehicles/config.yaml +22 -0
- dslighting/registry/3d-object-detection-for-autonomous-vehicles/description.md +157 -0
- dslighting/registry/3d-object-detection-for-autonomous-vehicles/description_obfuscated.md +66 -0
- dslighting/registry/3d-object-detection-for-autonomous-vehicles/grade.py +161 -0
- dslighting/registry/3d-object-detection-for-autonomous-vehicles/mAP_evaluation.py +425 -0
- dslighting/registry/3d-object-detection-for-autonomous-vehicles/prepare.py +483 -0
- dslighting/registry/3d-object-detection-for-autonomous-vehicles/prepare_val.py +719 -0
- dslighting/registry/AI4Code/checksums.yaml +7 -0
- dslighting/registry/AI4Code/config.yaml +26 -0
- dslighting/registry/AI4Code/description.md +122 -0
- dslighting/registry/AI4Code/description_obfuscated.md +38 -0
- dslighting/registry/AI4Code/grade.py +70 -0
- dslighting/registry/AI4Code/prepare.py +84 -0
- dslighting/registry/AI4Code/prepare_val.py +159 -0
- dslighting/registry/README.md +466 -0
- dslighting/registry/__init__.py +0 -0
- dslighting/registry/aerial-cactus-identification/checksums.yaml +6 -0
- dslighting/registry/aerial-cactus-identification/config.yaml +16 -0
- dslighting/registry/aerial-cactus-identification/description.md +56 -0
- dslighting/registry/aerial-cactus-identification/description_obfuscated.md +28 -0
- dslighting/registry/aerial-cactus-identification/grade.py +11 -0
- dslighting/registry/aerial-cactus-identification/prepare.py +71 -0
- dslighting/registry/aerial-cactus-identification/prepare_val.py +133 -0
- dslighting/registry/alaska2-image-steganalysis/checksums.yaml +5 -0
- dslighting/registry/alaska2-image-steganalysis/config.yaml +22 -0
- dslighting/registry/alaska2-image-steganalysis/description.md +91 -0
- dslighting/registry/alaska2-image-steganalysis/description_obfuscated.md +44 -0
- dslighting/registry/alaska2-image-steganalysis/grade.py +136 -0
- dslighting/registry/alaska2-image-steganalysis/prepare.py +88 -0
- dslighting/registry/alaska2-image-steganalysis/prepare_val.py +148 -0
- dslighting/registry/aptos2019-blindness-detection/checksums.yaml +7 -0
- dslighting/registry/aptos2019-blindness-detection/config.yaml +24 -0
- dslighting/registry/aptos2019-blindness-detection/description.md +118 -0
- dslighting/registry/aptos2019-blindness-detection/description_obfuscated.md +40 -0
- dslighting/registry/aptos2019-blindness-detection/grade.py +35 -0
- dslighting/registry/aptos2019-blindness-detection/prepare.py +75 -0
- dslighting/registry/aptos2019-blindness-detection/prepare_val.py +123 -0
- dslighting/registry/bike-sharing-demand/__init__.py +0 -0
- dslighting/registry/bike-sharing-demand/config.yaml +15 -0
- dslighting/registry/bike-sharing-demand/description.md +54 -0
- dslighting/registry/bike-sharing-demand/grade.py +55 -0
- dslighting/registry/bike-sharing-demand/prepare.py +37 -0
- dslighting/registry/bike-sharing-demand/report.md +179 -0
- dslighting/registry/billion-word-imputation/checksums.yaml +5 -0
- dslighting/registry/billion-word-imputation/config.yaml +16 -0
- dslighting/registry/billion-word-imputation/description.md +52 -0
- dslighting/registry/billion-word-imputation/description_obfuscated.md +32 -0
- dslighting/registry/billion-word-imputation/grade.py +37 -0
- dslighting/registry/billion-word-imputation/prepare.py +107 -0
- dslighting/registry/billion-word-imputation/prepare_val.py +179 -0
- dslighting/registry/bms-molecular-translation/checksums.yaml +7 -0
- dslighting/registry/bms-molecular-translation/config.yaml +22 -0
- dslighting/registry/bms-molecular-translation/description.md +68 -0
- dslighting/registry/bms-molecular-translation/description_obfuscated.md +26 -0
- dslighting/registry/bms-molecular-translation/grade.py +40 -0
- dslighting/registry/bms-molecular-translation/prepare.py +68 -0
- dslighting/registry/bms-molecular-translation/prepare_val.py +131 -0
- dslighting/registry/cassava-leaf-disease-classification/checksums.yaml +7 -0
- dslighting/registry/cassava-leaf-disease-classification/config.yaml +28 -0
- dslighting/registry/cassava-leaf-disease-classification/description.md +124 -0
- dslighting/registry/cassava-leaf-disease-classification/description_obfuscated.md +36 -0
- dslighting/registry/cassava-leaf-disease-classification/grade.py +12 -0
- dslighting/registry/cassava-leaf-disease-classification/prepare.py +113 -0
- dslighting/registry/cassava-leaf-disease-classification/prepare_val.py +186 -0
- dslighting/registry/cdiscount-image-classification-challenge/checksums.yaml +9 -0
- dslighting/registry/cdiscount-image-classification-challenge/config.yaml +22 -0
- dslighting/registry/cdiscount-image-classification-challenge/description.md +100 -0
- dslighting/registry/cdiscount-image-classification-challenge/description_obfuscated.md +25 -0
- dslighting/registry/cdiscount-image-classification-challenge/grade.py +11 -0
- dslighting/registry/cdiscount-image-classification-challenge/prepare.py +144 -0
- dslighting/registry/cdiscount-image-classification-challenge/prepare_val.py +205 -0
- dslighting/registry/chaii-hindi-and-tamil-question-answering/checksums.yaml +7 -0
- dslighting/registry/chaii-hindi-and-tamil-question-answering/config.yaml +26 -0
- dslighting/registry/chaii-hindi-and-tamil-question-answering/description.md +138 -0
- dslighting/registry/chaii-hindi-and-tamil-question-answering/description_obfuscated.md +59 -0
- dslighting/registry/chaii-hindi-and-tamil-question-answering/grade.py +67 -0
- dslighting/registry/chaii-hindi-and-tamil-question-answering/prepare.py +31 -0
- dslighting/registry/chaii-hindi-and-tamil-question-answering/prepare_val.py +94 -0
- dslighting/registry/champs-scalar-coupling/checksums.yaml +13 -0
- dslighting/registry/champs-scalar-coupling/config.yaml +26 -0
- dslighting/registry/champs-scalar-coupling/description.md +111 -0
- dslighting/registry/champs-scalar-coupling/description_obfuscated.md +32 -0
- dslighting/registry/champs-scalar-coupling/grade.py +60 -0
- dslighting/registry/champs-scalar-coupling/prepare.py +116 -0
- dslighting/registry/champs-scalar-coupling/prepare_val.py +155 -0
- dslighting/registry/conways-reverse-game-of-life-2020/__init__.py +0 -0
- dslighting/registry/conways-reverse-game-of-life-2020/checksums.yaml +9 -0
- dslighting/registry/conways-reverse-game-of-life-2020/config.yaml +17 -0
- dslighting/registry/conways-reverse-game-of-life-2020/description.md +27 -0
- dslighting/registry/conways-reverse-game-of-life-2020/grade.py +40 -0
- dslighting/registry/conways-reverse-game-of-life-2020/prepare.py +41 -0
- dslighting/registry/dabench-0-mean-fare-paid/checksums.yaml +2 -0
- dslighting/registry/dabench-0-mean-fare-paid/config.yaml +16 -0
- dslighting/registry/dabench-0-mean-fare-paid/description.md +43 -0
- dslighting/registry/dabench-0-mean-fare-paid/grade.py +66 -0
- dslighting/registry/dabench-0-mean-fare-paid/prepare.py +49 -0
- dslighting/registry/dabench-10-total-traded-quantity/checksums.yaml +2 -0
- dslighting/registry/dabench-10-total-traded-quantity/config.yaml +16 -0
- dslighting/registry/dabench-10-total-traded-quantity/description.md +43 -0
- dslighting/registry/dabench-10-total-traded-quantity/grade.py +66 -0
- dslighting/registry/dabench-10-total-traded-quantity/prepare.py +49 -0
- dslighting/registry/dabench-105-correlation-coefficient-between/checksums.yaml +2 -0
- dslighting/registry/dabench-105-correlation-coefficient-between/config.yaml +16 -0
- dslighting/registry/dabench-105-correlation-coefficient-between/description.md +43 -0
- dslighting/registry/dabench-105-correlation-coefficient-between/grade.py +66 -0
- dslighting/registry/dabench-105-correlation-coefficient-between/prepare.py +49 -0
- dslighting/registry/dabench-108-generate-feature-called/checksums.yaml +2 -0
- dslighting/registry/dabench-108-generate-feature-called/config.yaml +16 -0
- dslighting/registry/dabench-108-generate-feature-called/description.md +43 -0
- dslighting/registry/dabench-108-generate-feature-called/grade.py +66 -0
- dslighting/registry/dabench-108-generate-feature-called/prepare.py +49 -0
- dslighting/registry/dabench-109-explore-distribution-loanamount/checksums.yaml +2 -0
- dslighting/registry/dabench-109-explore-distribution-loanamount/config.yaml +16 -0
- dslighting/registry/dabench-109-explore-distribution-loanamount/description.md +45 -0
- dslighting/registry/dabench-109-explore-distribution-loanamount/grade.py +66 -0
- dslighting/registry/dabench-109-explore-distribution-loanamount/prepare.py +49 -0
- dslighting/registry/dabench-11-correlation-coefficient-between/checksums.yaml +2 -0
- dslighting/registry/dabench-11-correlation-coefficient-between/config.yaml +16 -0
- dslighting/registry/dabench-11-correlation-coefficient-between/description.md +45 -0
- dslighting/registry/dabench-11-correlation-coefficient-between/grade.py +66 -0
- dslighting/registry/dabench-11-correlation-coefficient-between/prepare.py +49 -0
- dslighting/registry/dabench-111-comprehensive-data-preprocessing/checksums.yaml +2 -0
- dslighting/registry/dabench-111-comprehensive-data-preprocessing/config.yaml +16 -0
- dslighting/registry/dabench-111-comprehensive-data-preprocessing/description.md +43 -0
- dslighting/registry/dabench-111-comprehensive-data-preprocessing/grade.py +66 -0
- dslighting/registry/dabench-111-comprehensive-data-preprocessing/prepare.py +49 -0
- dslighting/registry/dabench-114-which-country-highest/checksums.yaml +2 -0
- dslighting/registry/dabench-114-which-country-highest/config.yaml +16 -0
- dslighting/registry/dabench-114-which-country-highest/description.md +43 -0
- dslighting/registry/dabench-114-which-country-highest/grade.py +66 -0
- dslighting/registry/dabench-114-which-country-highest/prepare.py +49 -0
- dslighting/registry/dabench-116-there-outliers-happiness/checksums.yaml +2 -0
- dslighting/registry/dabench-116-there-outliers-happiness/config.yaml +16 -0
- dslighting/registry/dabench-116-there-outliers-happiness/description.md +43 -0
- dslighting/registry/dabench-116-there-outliers-happiness/grade.py +66 -0
- dslighting/registry/dabench-116-there-outliers-happiness/prepare.py +49 -0
- dslighting/registry/dabench-117-which-variable-strongest/checksums.yaml +2 -0
- dslighting/registry/dabench-117-which-variable-strongest/config.yaml +16 -0
- dslighting/registry/dabench-117-which-variable-strongest/description.md +45 -0
- dslighting/registry/dabench-117-which-variable-strongest/grade.py +66 -0
- dslighting/registry/dabench-117-which-variable-strongest/prepare.py +49 -0
- dslighting/registry/dabench-118-there-linear-relationship/checksums.yaml +2 -0
- dslighting/registry/dabench-118-there-linear-relationship/config.yaml +16 -0
- dslighting/registry/dabench-118-there-linear-relationship/description.md +43 -0
- dslighting/registry/dabench-118-there-linear-relationship/grade.py +66 -0
- dslighting/registry/dabench-118-there-linear-relationship/prepare.py +49 -0
- dslighting/registry/dabench-123-which-country-highest/checksums.yaml +2 -0
- dslighting/registry/dabench-123-which-country-highest/config.yaml +16 -0
- dslighting/registry/dabench-123-which-country-highest/description.md +46 -0
- dslighting/registry/dabench-123-which-country-highest/grade.py +66 -0
- dslighting/registry/dabench-123-which-country-highest/prepare.py +49 -0
- dslighting/registry/dabench-124-there-significant-difference/checksums.yaml +2 -0
- dslighting/registry/dabench-124-there-significant-difference/config.yaml +16 -0
- dslighting/registry/dabench-124-there-significant-difference/description.md +48 -0
- dslighting/registry/dabench-124-there-significant-difference/grade.py +66 -0
- dslighting/registry/dabench-124-there-significant-difference/prepare.py +49 -0
- dslighting/registry/dabench-125-predict-number-people/checksums.yaml +2 -0
- dslighting/registry/dabench-125-predict-number-people/config.yaml +16 -0
- dslighting/registry/dabench-125-predict-number-people/description.md +52 -0
- dslighting/registry/dabench-125-predict-number-people/grade.py +66 -0
- dslighting/registry/dabench-125-predict-number-people/prepare.py +49 -0
- dslighting/registry/dabench-129-mean-standard-deviation/checksums.yaml +2 -0
- dslighting/registry/dabench-129-mean-standard-deviation/config.yaml +16 -0
- dslighting/registry/dabench-129-mean-standard-deviation/description.md +44 -0
- dslighting/registry/dabench-129-mean-standard-deviation/grade.py +66 -0
- dslighting/registry/dabench-129-mean-standard-deviation/prepare.py +49 -0
- dslighting/registry/dabench-130-passengers-follows-normal/checksums.yaml +2 -0
- dslighting/registry/dabench-130-passengers-follows-normal/config.yaml +16 -0
- dslighting/registry/dabench-130-passengers-follows-normal/description.md +43 -0
- dslighting/registry/dabench-130-passengers-follows-normal/grade.py +66 -0
- dslighting/registry/dabench-130-passengers-follows-normal/prepare.py +49 -0
- dslighting/registry/dabench-132-identify-count-number/checksums.yaml +2 -0
- dslighting/registry/dabench-132-identify-count-number/config.yaml +16 -0
- dslighting/registry/dabench-132-identify-count-number/description.md +46 -0
- dslighting/registry/dabench-132-identify-count-number/grade.py +66 -0
- dslighting/registry/dabench-132-identify-count-number/prepare.py +49 -0
- dslighting/registry/dabench-133-comprehensive-data-preprocessing/checksums.yaml +2 -0
- dslighting/registry/dabench-133-comprehensive-data-preprocessing/config.yaml +16 -0
- dslighting/registry/dabench-133-comprehensive-data-preprocessing/description.md +49 -0
- dslighting/registry/dabench-133-comprehensive-data-preprocessing/grade.py +66 -0
- dslighting/registry/dabench-133-comprehensive-data-preprocessing/prepare.py +49 -0
- dslighting/registry/dabench-136-distribution-analysis-fare/checksums.yaml +2 -0
- dslighting/registry/dabench-136-distribution-analysis-fare/config.yaml +16 -0
- dslighting/registry/dabench-136-distribution-analysis-fare/description.md +45 -0
- dslighting/registry/dabench-136-distribution-analysis-fare/grade.py +66 -0
- dslighting/registry/dabench-136-distribution-analysis-fare/prepare.py +49 -0
- dslighting/registry/dabench-137-feature-engineering-creating/checksums.yaml +2 -0
- dslighting/registry/dabench-137-feature-engineering-creating/config.yaml +16 -0
- dslighting/registry/dabench-137-feature-engineering-creating/description.md +43 -0
- dslighting/registry/dabench-137-feature-engineering-creating/grade.py +66 -0
- dslighting/registry/dabench-137-feature-engineering-creating/prepare.py +49 -0
- dslighting/registry/dabench-139-question-percentage-votes/checksums.yaml +2 -0
- dslighting/registry/dabench-139-question-percentage-votes/config.yaml +16 -0
- dslighting/registry/dabench-139-question-percentage-votes/description.md +43 -0
- dslighting/registry/dabench-139-question-percentage-votes/grade.py +66 -0
- dslighting/registry/dabench-139-question-percentage-votes/prepare.py +49 -0
- dslighting/registry/dabench-14-feature-called-price/checksums.yaml +2 -0
- dslighting/registry/dabench-14-feature-called-price/config.yaml +16 -0
- dslighting/registry/dabench-14-feature-called-price/description.md +45 -0
- dslighting/registry/dabench-14-feature-called-price/grade.py +66 -0
- dslighting/registry/dabench-14-feature-called-price/prepare.py +49 -0
- dslighting/registry/dabench-140-question-there-correlation/checksums.yaml +2 -0
- dslighting/registry/dabench-140-question-there-correlation/config.yaml +16 -0
- dslighting/registry/dabench-140-question-there-correlation/description.md +50 -0
- dslighting/registry/dabench-140-question-there-correlation/grade.py +66 -0
- dslighting/registry/dabench-140-question-there-correlation/prepare.py +49 -0
- dslighting/registry/dabench-142-question-there-relationship/checksums.yaml +2 -0
- dslighting/registry/dabench-142-question-there-relationship/config.yaml +16 -0
- dslighting/registry/dabench-142-question-there-relationship/description.md +45 -0
- dslighting/registry/dabench-142-question-there-relationship/grade.py +66 -0
- dslighting/registry/dabench-142-question-there-relationship/prepare.py +49 -0
- dslighting/registry/dabench-144-question-mean-standard/checksums.yaml +2 -0
- dslighting/registry/dabench-144-question-mean-standard/config.yaml +16 -0
- dslighting/registry/dabench-144-question-mean-standard/description.md +46 -0
- dslighting/registry/dabench-144-question-mean-standard/grade.py +66 -0
- dslighting/registry/dabench-144-question-mean-standard/prepare.py +49 -0
- dslighting/registry/dabench-174-determine-skewness-fares/checksums.yaml +2 -0
- dslighting/registry/dabench-174-determine-skewness-fares/config.yaml +16 -0
- dslighting/registry/dabench-174-determine-skewness-fares/description.md +43 -0
- dslighting/registry/dabench-174-determine-skewness-fares/grade.py +66 -0
- dslighting/registry/dabench-174-determine-skewness-fares/prepare.py +49 -0
- dslighting/registry/dabench-175-identify-there-outliers/checksums.yaml +2 -0
- dslighting/registry/dabench-175-identify-there-outliers/config.yaml +16 -0
- dslighting/registry/dabench-175-identify-there-outliers/description.md +43 -0
- dslighting/registry/dabench-175-identify-there-outliers/grade.py +66 -0
- dslighting/registry/dabench-175-identify-there-outliers/prepare.py +49 -0
- dslighting/registry/dabench-176-median-male-passengers/checksums.yaml +2 -0
- dslighting/registry/dabench-176-median-male-passengers/config.yaml +16 -0
- dslighting/registry/dabench-176-median-male-passengers/description.md +46 -0
- dslighting/registry/dabench-176-median-male-passengers/grade.py +66 -0
- dslighting/registry/dabench-176-median-male-passengers/prepare.py +49 -0
- dslighting/registry/dabench-177-investigate-distribution-ages/checksums.yaml +2 -0
- dslighting/registry/dabench-177-investigate-distribution-ages/config.yaml +16 -0
- dslighting/registry/dabench-177-investigate-distribution-ages/description.md +47 -0
- dslighting/registry/dabench-177-investigate-distribution-ages/grade.py +66 -0
- dslighting/registry/dabench-177-investigate-distribution-ages/prepare.py +49 -0
- dslighting/registry/dabench-178-comprehensive-data-preprocessing/checksums.yaml +2 -0
- dslighting/registry/dabench-178-comprehensive-data-preprocessing/config.yaml +16 -0
- dslighting/registry/dabench-178-comprehensive-data-preprocessing/description.md +50 -0
- dslighting/registry/dabench-178-comprehensive-data-preprocessing/grade.py +66 -0
- dslighting/registry/dabench-178-comprehensive-data-preprocessing/prepare.py +49 -0
- dslighting/registry/dabench-179-pearson-correlation-coefficient/checksums.yaml +2 -0
- dslighting/registry/dabench-179-pearson-correlation-coefficient/config.yaml +16 -0
- dslighting/registry/dabench-179-pearson-correlation-coefficient/description.md +43 -0
- dslighting/registry/dabench-179-pearson-correlation-coefficient/grade.py +66 -0
- dslighting/registry/dabench-179-pearson-correlation-coefficient/prepare.py +49 -0
- dslighting/registry/dabench-18-mean-standard-deviation/checksums.yaml +2 -0
- dslighting/registry/dabench-18-mean-standard-deviation/config.yaml +16 -0
- dslighting/registry/dabench-18-mean-standard-deviation/description.md +43 -0
- dslighting/registry/dabench-18-mean-standard-deviation/grade.py +66 -0
- dslighting/registry/dabench-18-mean-standard-deviation/prepare.py +49 -0
- dslighting/registry/dabench-180-outlier-detection-fare/checksums.yaml +2 -0
- dslighting/registry/dabench-180-outlier-detection-fare/config.yaml +16 -0
- dslighting/registry/dabench-180-outlier-detection-fare/description.md +45 -0
- dslighting/registry/dabench-180-outlier-detection-fare/grade.py +66 -0
- dslighting/registry/dabench-180-outlier-detection-fare/prepare.py +49 -0
- dslighting/registry/dabench-19-distribution-column-adheres/checksums.yaml +2 -0
- dslighting/registry/dabench-19-distribution-column-adheres/config.yaml +16 -0
- dslighting/registry/dabench-19-distribution-column-adheres/description.md +43 -0
- dslighting/registry/dabench-19-distribution-column-adheres/grade.py +66 -0
- dslighting/registry/dabench-19-distribution-column-adheres/prepare.py +49 -0
- dslighting/registry/dabench-207-which-column-contain/checksums.yaml +2 -0
- dslighting/registry/dabench-207-which-column-contain/config.yaml +16 -0
- dslighting/registry/dabench-207-which-column-contain/description.md +43 -0
- dslighting/registry/dabench-207-which-column-contain/grade.py +66 -0
- dslighting/registry/dabench-207-which-column-contain/prepare.py +49 -0
- dslighting/registry/dabench-208-mean-standard-deviation/checksums.yaml +2 -0
- dslighting/registry/dabench-208-mean-standard-deviation/config.yaml +16 -0
- dslighting/registry/dabench-208-mean-standard-deviation/description.md +45 -0
- dslighting/registry/dabench-208-mean-standard-deviation/grade.py +66 -0
- dslighting/registry/dabench-208-mean-standard-deviation/prepare.py +49 -0
- dslighting/registry/dabench-209-there-correlation-between/checksums.yaml +2 -0
- dslighting/registry/dabench-209-there-correlation-between/config.yaml +16 -0
- dslighting/registry/dabench-209-there-correlation-between/description.md +43 -0
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- mlebench/competitions/rsna-miccai-brain-tumor-radiogenomic-classification/grade.py +13 -0
- mlebench/competitions/rsna-miccai-brain-tumor-radiogenomic-classification/prepare.py +47 -0
- mlebench/competitions/rsna-miccai-brain-tumor-radiogenomic-classification/prepare_val.py +97 -0
- mlebench/competitions/santander-customer-satisfaction/grade.py +10 -0
- mlebench/competitions/santander-customer-satisfaction/prepare.py +41 -0
- mlebench/competitions/sciencebench-001-clintox-nn/__init__.py +0 -0
- mlebench/competitions/sciencebench-001-clintox-nn/grade.py +56 -0
- mlebench/competitions/sciencebench-001-clintox-nn/prepare.py +75 -0
- mlebench/competitions/sciencebench-015-aai/grade.py +37 -0
- mlebench/competitions/sciencebench-015-aai/prepare.py +102 -0
- mlebench/competitions/sciencebench-051-brain-blood-qsar/grade.py +58 -0
- mlebench/competitions/sciencebench-051-brain-blood-qsar/prepare.py +69 -0
- mlebench/competitions/sciencebench-101-experimental-band-gap-prediction/grade.py +55 -0
- mlebench/competitions/sciencebench-101-experimental-band-gap-prediction/prepare.py +88 -0
- mlebench/competitions/see-click-predict-fix/__init__.py +0 -0
- mlebench/competitions/see-click-predict-fix/grade.py +66 -0
- mlebench/competitions/see-click-predict-fix/prepare.py +25 -0
- mlebench/competitions/see_click_predict_fix/__init__.py +0 -0
- mlebench/competitions/see_click_predict_fix/grade.py +66 -0
- mlebench/competitions/see_click_predict_fix/prepare.py +25 -0
- mlebench/competitions/seti-breakthrough-listen/grade.py +11 -0
- mlebench/competitions/seti-breakthrough-listen/prepare.py +71 -0
- mlebench/competitions/seti-breakthrough-listen/prepare_val.py +159 -0
- mlebench/competitions/siim-covid19-detection/grade.py +194 -0
- mlebench/competitions/siim-covid19-detection/prepare.py +123 -0
- mlebench/competitions/siim-covid19-detection/prepare_val.py +164 -0
- mlebench/competitions/siim-isic-melanoma-classification/grade.py +11 -0
- mlebench/competitions/siim-isic-melanoma-classification/prepare.py +127 -0
- mlebench/competitions/siim-isic-melanoma-classification/prepare_val.py +158 -0
- mlebench/competitions/smartphone-decimeter-2022/grade.py +55 -0
- mlebench/competitions/smartphone-decimeter-2022/notebook.py +86 -0
- mlebench/competitions/smartphone-decimeter-2022/prepare.py +143 -0
- mlebench/competitions/smartphone-decimeter-2022/prepare_val.py +199 -0
- mlebench/competitions/spaceship-titanic/grade.py +11 -0
- mlebench/competitions/spaceship-titanic/prepare.py +23 -0
- mlebench/competitions/spaceship-titanic/prepare_val.py +61 -0
- mlebench/competitions/spooky-author-identification/classes.py +1 -0
- mlebench/competitions/spooky-author-identification/grade.py +38 -0
- mlebench/competitions/spooky-author-identification/prepare.py +40 -0
- mlebench/competitions/spooky-author-identification/prepare_val.py +78 -0
- mlebench/competitions/stanford-covid-vaccine/grade.py +65 -0
- mlebench/competitions/stanford-covid-vaccine/prepare.py +129 -0
- mlebench/competitions/stanford-covid-vaccine/prepare_val.py +199 -0
- mlebench/competitions/statoil-iceberg-classifier-challenge/grade.py +41 -0
- mlebench/competitions/statoil-iceberg-classifier-challenge/prepare.py +105 -0
- mlebench/competitions/statoil-iceberg-classifier-challenge/prepare_val.py +157 -0
- mlebench/competitions/tabular-playground-series-dec-2021/grade.py +11 -0
- mlebench/competitions/tabular-playground-series-dec-2021/prepare.py +39 -0
- mlebench/competitions/tabular-playground-series-dec-2021/prepare_val.py +99 -0
- mlebench/competitions/tabular-playground-series-may-2022/grade.py +9 -0
- mlebench/competitions/tabular-playground-series-may-2022/prepare.py +56 -0
- mlebench/competitions/tabular-playground-series-may-2022/prepare_val.py +116 -0
- mlebench/competitions/tensorflow-speech-recognition-challenge/grade.py +11 -0
- mlebench/competitions/tensorflow-speech-recognition-challenge/prepare.py +90 -0
- mlebench/competitions/tensorflow-speech-recognition-challenge/prepare_val.py +148 -0
- mlebench/competitions/tensorflow2-question-answering/grade.py +122 -0
- mlebench/competitions/tensorflow2-question-answering/prepare.py +122 -0
- mlebench/competitions/tensorflow2-question-answering/prepare_val.py +187 -0
- mlebench/competitions/text-normalization-challenge-english-language/grade.py +49 -0
- mlebench/competitions/text-normalization-challenge-english-language/prepare.py +115 -0
- mlebench/competitions/text-normalization-challenge-english-language/prepare_val.py +213 -0
- mlebench/competitions/text-normalization-challenge-russian-language/grade.py +49 -0
- mlebench/competitions/text-normalization-challenge-russian-language/prepare.py +113 -0
- mlebench/competitions/text-normalization-challenge-russian-language/prepare_val.py +165 -0
- mlebench/competitions/tgs-salt-identification-challenge/grade.py +144 -0
- mlebench/competitions/tgs-salt-identification-challenge/prepare.py +158 -0
- mlebench/competitions/tgs-salt-identification-challenge/prepare_val.py +166 -0
- mlebench/competitions/the-icml-2013-whale-challenge-right-whale-redux/grade.py +11 -0
- mlebench/competitions/the-icml-2013-whale-challenge-right-whale-redux/prepare.py +95 -0
- mlebench/competitions/the-icml-2013-whale-challenge-right-whale-redux/prepare_val.py +141 -0
- mlebench/competitions/tmdb-box-office-prediction/__init__.py +0 -0
- mlebench/competitions/tmdb-box-office-prediction/grade.py +55 -0
- mlebench/competitions/tmdb-box-office-prediction/prepare.py +35 -0
- mlebench/competitions/tweet-sentiment-extraction/grade.py +67 -0
- mlebench/competitions/tweet-sentiment-extraction/prepare.py +36 -0
- mlebench/competitions/tweet-sentiment-extraction/prepare_val.py +106 -0
- mlebench/competitions/us-patent-phrase-to-phrase-matching/grade.py +31 -0
- mlebench/competitions/us-patent-phrase-to-phrase-matching/prepare.py +33 -0
- mlebench/competitions/us-patent-phrase-to-phrase-matching/prepare_val.py +71 -0
- mlebench/competitions/utils.py +266 -0
- mlebench/competitions/uw-madison-gi-tract-image-segmentation/grade.py +158 -0
- mlebench/competitions/uw-madison-gi-tract-image-segmentation/prepare.py +139 -0
- mlebench/competitions/uw-madison-gi-tract-image-segmentation/prepare_val.py +193 -0
- mlebench/competitions/ventilator-pressure-prediction/__init__.py +0 -0
- mlebench/competitions/ventilator-pressure-prediction/grade.py +52 -0
- mlebench/competitions/ventilator-pressure-prediction/prepare.py +27 -0
- mlebench/competitions/ventilator-pressure-prediction/prepare_val.py +142 -0
- mlebench/competitions/ventilator_pressure_prediction/__init__.py +0 -0
- mlebench/competitions/ventilator_pressure_prediction/grade.py +52 -0
- mlebench/competitions/ventilator_pressure_prediction/prepare.py +27 -0
- mlebench/competitions/vesuvius-challenge-ink-detection/grade.py +97 -0
- mlebench/competitions/vesuvius-challenge-ink-detection/prepare.py +122 -0
- mlebench/competitions/vesuvius-challenge-ink-detection/prepare_val.py +170 -0
- mlebench/competitions/vinbigdata-chest-xray-abnormalities-detection/grade.py +220 -0
- mlebench/competitions/vinbigdata-chest-xray-abnormalities-detection/prepare.py +129 -0
- mlebench/competitions/vinbigdata-chest-xray-abnormalities-detection/prepare_val.py +204 -0
- mlebench/competitions/whale-categorization-playground/grade.py +41 -0
- mlebench/competitions/whale-categorization-playground/prepare.py +103 -0
- mlebench/competitions/whale-categorization-playground/prepare_val.py +196 -0
- mlebench/data.py +420 -0
- mlebench/grade.py +209 -0
- mlebench/grade_helpers.py +235 -0
- mlebench/metrics.py +75 -0
- mlebench/registry.py +332 -0
- mlebench/utils.py +346 -0
- dslighting-1.3.9.dist-info/RECORD +0 -80
- {dslighting-1.3.9.dist-info → dslighting-1.7.6.dist-info}/WHEEL +0 -0
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import csv
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import zipfile
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from pathlib import Path
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from sklearn.model_selection import train_test_split
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from mlebench.utils import compress, extract, read_csv
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def _process_split(input_df, public_path, private_path, test_size, random_state):
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"""
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Splits an input DataFrame into train and test sets, processes them,
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and writes the final files to the specified public and private paths.
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This function encapsulates the entire data preparation logic for one split,
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ensuring it can be reused for creating both the main test set and a
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subsequent validation set.
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Args:
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input_df: The DataFrame to be split.
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public_path: The directory to save public artifacts (e.g., train data, test features).
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private_path: The directory to save private artifacts (e.g., test labels).
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test_size: The proportion of the dataset to allocate to the test split.
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random_state: The seed used by the random number generator.
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Returns:
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The newly created training DataFrame, which can be used for a subsequent split.
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"""
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# Create train and test splits from the provided dataframe
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# We split so that we don't share any sentence_ids between train and test
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unique_sentence_ids = input_df["sentence_id"].unique()
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train_sentence_ids, test_sentence_ids = train_test_split(
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unique_sentence_ids, test_size=test_size, random_state=random_state
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)
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new_train = input_df[input_df["sentence_id"].isin(train_sentence_ids)]
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answers = input_df[input_df["sentence_id"].isin(test_sentence_ids)]
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assert set(new_train["sentence_id"]).isdisjoint(
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set(answers["sentence_id"])
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), f"sentence_id is not disjoint between train and test sets"
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# "sentence_id" counts need to be reset for new_train and answers
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old_id: new_id for new_id, old_id in enumerate(new_train["sentence_id"].unique())
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}
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new_train["sentence_id"] = new_train["sentence_id"].map(new_train_id_mapping)
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answers_id_mapping = {
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old_id: new_id for new_id, old_id in enumerate(answers["sentence_id"].unique())
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}
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answers["sentence_id"] = answers["sentence_id"].map(answers_id_mapping)
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# Create new test set
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# Reformat answers to match sample submission format
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answers = answers[["sentence_id", "token_id", "after"]].copy()
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answers["id"] = answers["sentence_id"].astype(str) + "_" + answers["token_id"].astype(str)
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answers = answers[["id", "after"]]
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sample_submission = new_test[["sentence_id", "token_id", "before"]].copy()
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sample_submission["id"] = (
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sample_submission["sentence_id"].astype(str)
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+ "_"
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+ sample_submission["token_id"].astype(str)
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)
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sample_submission["after"] = sample_submission["before"]
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sample_submission = sample_submission[["id", "after"]]
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# Checks
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assert new_train.columns.tolist() == [
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"sentence_id",
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"token_id",
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"class",
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"before",
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"after",
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], f"new_train.columns.tolist() == {new_train.columns.tolist()}"
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assert new_test.columns.tolist() == [
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"sentence_id",
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"token_id",
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"before",
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], f"new_test.columns.tolist() == {new_test.columns.tolist()}"
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assert sample_submission.columns.tolist() == [
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"id",
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"after",
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], f"sample_submission.columns.tolist() == {sample_submission.columns.tolist()}"
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assert answers.columns.tolist() == [
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"id",
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"after",
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], f"answers.columns.tolist() == {answers.columns.tolist()}"
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assert len(new_test) + len(new_train) == len(
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input_df
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), f"New train and test sets do not sum to old train set, got {len(new_test) + len(new_train)} and {len(input_df)}"
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# Write CSVs
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answers.to_csv(
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private_path / "answers.csv", index=False, quotechar='"', quoting=csv.QUOTE_NONNUMERIC
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)
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sample_submission.to_csv(
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private_path / "sample_submission.csv", index=False, quotechar='"', quoting=csv.QUOTE_NONNUMERIC
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)
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new_train.to_csv(
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public_path / "ru_train.csv", index=False, quotechar='"', quoting=csv.QUOTE_NONNUMERIC
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)
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new_test.to_csv(
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public_path / "ru_test_2.csv", index=False, quotechar='"', quoting=csv.QUOTE_NONNUMERIC
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)
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sample_submission.to_csv(
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public_path / "ru_sample_submission_2.csv",
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index=False,
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quotechar='"',
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quoting=csv.QUOTE_NONNUMERIC,
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)
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# Zip up
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with zipfile.ZipFile(public_path / "ru_train.csv.zip", "w") as zipf:
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zipf.write(public_path / "ru_train.csv", arcname="ru_train.csv")
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with zipfile.ZipFile(public_path / "ru_test_2.csv.zip", "w") as zipf:
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zipf.write(public_path / "ru_test_2.csv", arcname="ru_test_2.csv")
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with zipfile.ZipFile(public_path / "ru_sample_submission_2.csv.zip", "w") as zipf:
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zipf.write(public_path / "ru_sample_submission_2.csv", arcname="ru_sample_submission_2.csv")
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(public_path / "ru_train.csv").unlink()
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(public_path / "ru_test_2.csv").unlink()
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(public_path / "ru_sample_submission_2.csv").unlink()
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return new_train
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def prepare(raw: Path, public: Path, private: Path):
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# Define paths for the new validation set split
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public_val = public.parent / "public_val"
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private_val = private.parent / "private_val"
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# Create all output directories ahead of time
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for p in [public, private, public_val, private_val]:
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p.mkdir(parents=True, exist_ok=True)
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# Extract
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extract(raw / "ru_test_2.csv.zip", raw) # We only use the 2nd stage test set
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extract(raw / "ru_train.csv.zip", raw)
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extract(raw / "ru_sample_submission_2.csv.zip", raw)
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# Load initial raw data
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initial_train_data = read_csv(raw / "ru_train.csv")
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# --- First Split: Create Original Train and Test sets ---
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# This call generates the final public/private outputs. These must not be changed.
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# The returned DataFrame is the training set from this split.
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main_train_set = _process_split(
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input_df=initial_train_data,
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public_path=public,
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private_path=private,
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test_size=0.1,
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random_state=0,
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)
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# --- Second Split: Create New Train and Validation sets ---
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# This call takes the training data from the first split and splits it again
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# using the exact same logic. The outputs are written to the new _val directories.
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_ = _process_split(
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input_df=main_train_set,
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public_path=public_val,
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private_path=private_val,
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test_size=0.1, # Use same proportion
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random_state=0, # Use same random seed for consistent splitting logic
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)
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@@ -0,0 +1,24 @@
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id: tgs-salt-identification-challenge
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name: TGS Salt Identification Challenge
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competition_type: simple
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awards_medals: true
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prizes:
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- position: 1
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value: 50000
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- position: 2
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value: 25000
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- position: 3
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value: 15000
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- position: 4
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value: 10000
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description: mlebench/competitions/tgs-salt-identification-challenge/description.md
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dataset:
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answers: tgs-salt-identification-challenge/prepared/private/test.csv
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sample_submission: tgs-salt-identification-challenge/prepared/public/sample_submission.csv
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grader:
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name: mean-precision-intersection-over-union-at-different-thresholds
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grade_fn: mlebench.competitions.tgs-salt-identification-challenge.grade:grade
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preparer: mlebench.competitions.tgs-salt-identification-challenge.prepare:prepare
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# Overview
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## Description
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Several areas of Earth with large accumulations of oil and gas *also* have huge deposits of salt below the surface.
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But unfortunately, knowing where large salt deposits are precisely is very difficult. Professional seismic imaging still requires expert human interpretation of salt bodies. This leads to very subjective, highly variable renderings. More alarmingly, it leads to potentially dangerous situations for oil and gas company drillers.
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To create the most accurate seismic images and 3D renderings, [TGS (the world's leading geoscience data company)](http://www.tgs.com/) is hoping Kaggle's machine learning community will be able to build an algorithm that automatically and accurately identifies if a subsurface target is salt or not.
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## Evaluation
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This competition is evaluated on the mean average precision at different intersection over union (IoU) thresholds. The IoU of a proposed set of object pixels and a set of true object pixels is calculated as:
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$$\text{IoU}(A, B)=\frac{A \cap B}{A \cup B}$$
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The metric sweeps over a range of IoU thresholds, at each point calculating an average precision value. The threshold values range from 0.5 to 0.95 with a step size of 0.05: `(0.5, 0.55, 0.6, 0.65, 0.7, 0.75, 0.8, 0.85, 0.9, 0.95)`. In other words, at a threshold of 0.5, a predicted object is considered a "hit" if its intersection over union with a ground truth object is greater than 0.5.
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At each threshold value 𝑡t, a precision value is calculated based on the number of true positives (TP), false negatives (FN), and false positives (FP) resulting from comparing the predicted object to all ground truth objects:
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$$\frac{T P(t)}{T P(t)+F P(t)+F N(t)}$$
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A true positive is counted when a single predicted object matches a ground truth object with an IoU above the threshold. A false positive indicates a predicted object had no associated ground truth object. A false negative indicates a ground truth object had no associated predicted object. The average precision of a single image is then calculated as the mean of the above precision values at each IoU threshold:
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$$\frac{1}{\mid \text { thresholds } \mid} \sum_t \frac{T P(t)}{T P(t)+F P(t)+F N(t)}$$
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Lastly, the score returned by the competition metric is the mean taken over the individual average precisions of each image in the test dataset.
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### Submission File
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In order to reduce the submission file size, our metric uses run-length encoding on the pixel values. Instead of submitting an exhaustive list of indices for your segmentation, you will submit pairs of values that contain a start position and a run length. E.g. '1 3' implies starting at pixel 1 and running a total of 3 pixels (1,2,3).
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The competition format requires a space delimited list of pairs. For example, '1 3 10 5' implies pixels 1,2,3,10,11,12,13,14 are to be included in the mask. The pixels are one-indexed\
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and numbered from top to bottom, then left to right: 1 is pixel (1,1), 2 is pixel (2,1), etc.
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The metric checks that the pairs are sorted, positive, and the decoded pixel values are not duplicated. It also checks that no two predicted masks for the same image are overlapping.
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The file should contain a header and have the following format. Each row in your submission represents a single predicted salt segmentation for the given image.
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+
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```
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id,rle_mask
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+
3e06571ef3,1 1
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a51b08d882,1 1
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c32590b06f,1 1
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etc.
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```
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50
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## Timeline
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- **October 12, 2018** - Entry deadline. You must accept the competition rules before this date in order to compete.
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- **October 12, 2018** - Team Merger deadline. This is the last day participants may join or merge teams.
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- **October 19, 2018** - Final submission deadline.
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+
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All deadlines are at 11:59 PM UTC on the corresponding day unless otherwise noted. The competition organizers reserve the right to update the contest timeline if they deem it necessary.
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+
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## Prizes
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- **1st Place** - $ 50,000
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- **2nd Place** - $25,000
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- **3rd Place** - $ 15,000
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- **4th Place** - $ 10,000
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## Citation
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Addison Howard, Arvind Sharma, Ashleigh Lenamond, cenyen, Compu Ter, John Adamck, Mark McDonald, Sathiya, Sri Kainkaryam, Will Cukierski. (2018). TGS Salt Identification Challenge. Kaggle. https://kaggle.com/competitions/tgs-salt-identification-challenge
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# Data
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## Dataset Description
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### Background
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Seismic data is collected using reflection seismology, or seismic reflection. The method requires a controlled seismic source of energy, such as compressed air or a seismic vibrator, and sensors record the reflection from rock interfaces within the subsurface. The recorded data is then processed to create a 3D view of earth's interior. Reflection seismology is similar to X-ray, sonar and echolocation.
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+
|
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77
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A seismic image is produced from imaging the reflection coming from rock boundaries. The seismic image shows the boundaries between different rock types. In theory, the strength of reflection is directly proportional to the difference in the physical properties on either sides of the interface. While seismic images show rock boundaries, they don't say much about the rock themselves; some rocks are easy to identify while some are difficult.
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78
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+
|
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79
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+
There are several areas of the world where there are vast quantities of salt in the subsurface. One of the challenges of seismic imaging is to identify the part of subsurface which is salt. Salt has characteristics that makes it both simple and hard to identify. Salt density is usually 2.14 g/cc which is lower than most surrounding rocks. The seismic velocity of salt is 4.5 km/sec, which is usually faster than its surrounding rocks. This difference creates a sharp reflection at the salt-sediment interface. Usually salt is an amorphous rock without much internal structure. This means that there is typically not much reflectivity inside the salt, unless there are sediments trapped inside it. The unusually high seismic velocity of salt can create problems with seismic imaging.
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+
|
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81
|
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### Data
|
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82
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|
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83
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+
The data is a set of images chosen at various locations chosen at random in the subsurface. The images are 101 x 101 pixels and each pixel is classified as either salt or sediment. In addition to the seismic images, the depth of the imaged location is provided for each image. The goal of the competition is to segment regions that contain salt.
|
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@@ -0,0 +1,42 @@
|
|
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1
|
+
# Task
|
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2
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+
|
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3
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Segment regions of salt in seismic images.
|
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4
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+
|
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5
|
+
# Metric
|
|
6
|
+
|
|
7
|
+
Mean average precision at different intersection over union (IoU) thresholds. The IoU of a proposed set of object pixels and a set of true object pixels is calculated as:
|
|
8
|
+
|
|
9
|
+
$$\text{IoU}(A, B)=\frac{A \cap B}{A \cup B}$$
|
|
10
|
+
|
|
11
|
+
The metric sweeps over a range of IoU thresholds, at each point calculating an average precision value. The threshold values range from 0.5 to 0.95 with a step size of 0.05: `(0.5, 0.55, 0.6, 0.65, 0.7, 0.75, 0.8, 0.85, 0.9, 0.95)`. In other words, at a threshold of 0.5, a predicted object is considered a "hit" if its intersection over union with a ground truth object is greater than 0.5.
|
|
12
|
+
|
|
13
|
+
At each threshold value 𝑡t, a precision value is calculated based on the number of true positives (TP), false negatives (FN), and false positives (FP) resulting from comparing the predicted object to all ground truth objects:
|
|
14
|
+
|
|
15
|
+
$$\frac{T P(t)}{T P(t)+F P(t)+F N(t)}$$
|
|
16
|
+
|
|
17
|
+
A true positive is counted when a single predicted object matches a ground truth object with an IoU above the threshold. A false positive indicates a predicted object had no associated ground truth object. A false negative indicates a ground truth object had no associated predicted object. The average precision of a single image is then calculated as the mean of the above precision values at each IoU threshold:
|
|
18
|
+
|
|
19
|
+
$$\frac{1}{\mid \text { thresholds } \mid} \sum_t \frac{T P(t)}{T P(t)+F P(t)+F N(t)}$$
|
|
20
|
+
|
|
21
|
+
# Submission Format
|
|
22
|
+
|
|
23
|
+
Use run-length encoding on the pixel values. Instead of submitting an exhaustive list of indices for your segmentation, you will submit pairs of values that contain a start position and a run length. E.g. '1 3' implies starting at pixel 1 and running a total of 3 pixels (1,2,3).
|
|
24
|
+
|
|
25
|
+
The competition format requires a space delimited list of pairs. For example, '1 3 10 5' implies pixels 1,2,3,10,11,12,13,14 are to be included in the mask. The pixels are one-indexed\
|
|
26
|
+
and numbered from top to bottom, then left to right: 1 is pixel (1,1), 2 is pixel (2,1), etc.
|
|
27
|
+
|
|
28
|
+
The metric checks that the pairs are sorted, positive, and the decoded pixel values are not duplicated. It also checks that no two predicted masks for the same image are overlapping.
|
|
29
|
+
|
|
30
|
+
The file should contain a header and have the following format. Each row in your submission represents a single predicted salt segmentation for the given image.
|
|
31
|
+
|
|
32
|
+
```
|
|
33
|
+
id,rle_mask
|
|
34
|
+
3e06571ef3,1 1
|
|
35
|
+
a51b08d882,1 1
|
|
36
|
+
c32590b06f,1 1
|
|
37
|
+
etc.
|
|
38
|
+
```
|
|
39
|
+
|
|
40
|
+
# Dataset
|
|
41
|
+
|
|
42
|
+
The data is a set of images chosen at various locations chosen at random in the subsurface. The images are 101 x 101 pixels and each pixel is classified as either salt or sediment. In addition to the seismic images, the depth of the imaged location is provided for each image.
|
|
@@ -0,0 +1,144 @@
|
|
|
1
|
+
import numpy as np
|
|
2
|
+
from numpy import ndarray
|
|
3
|
+
from pandas import DataFrame
|
|
4
|
+
|
|
5
|
+
from mlebench.competitions.utils import rle_decode
|
|
6
|
+
from mlebench.grade_helpers import InvalidSubmissionError
|
|
7
|
+
|
|
8
|
+
IMG_HEIGHT = 101
|
|
9
|
+
IMG_WIDTH = 101
|
|
10
|
+
|
|
11
|
+
|
|
12
|
+
def grade(submission: DataFrame, answers: DataFrame) -> float:
|
|
13
|
+
expected_columns = ["id", "rle_mask"]
|
|
14
|
+
|
|
15
|
+
assert set(answers.columns) == set(
|
|
16
|
+
expected_columns
|
|
17
|
+
), f"Expected answers to have columns {expected_columns}, but got {answers.columns} instead!"
|
|
18
|
+
|
|
19
|
+
if set(submission.columns) != set(expected_columns):
|
|
20
|
+
raise InvalidSubmissionError(
|
|
21
|
+
f"Expected submission to have columns {expected_columns}, but got {submission.columns} instead!"
|
|
22
|
+
)
|
|
23
|
+
|
|
24
|
+
if len(submission) != len(answers):
|
|
25
|
+
raise InvalidSubmissionError(
|
|
26
|
+
f"Expected submission to have {len(answers)} rows, but got {len(submission)} instead!"
|
|
27
|
+
)
|
|
28
|
+
|
|
29
|
+
transformed_submission = submission.fillna("")
|
|
30
|
+
transformed_answers = answers.fillna("")
|
|
31
|
+
|
|
32
|
+
assert transformed_answers.applymap(
|
|
33
|
+
lambda x: isinstance(x, str)
|
|
34
|
+
).values.all(), "Expected all items in `answers` to be strings, but found non-string items!"
|
|
35
|
+
|
|
36
|
+
if not transformed_submission.applymap(lambda x: isinstance(x, str)).values.all():
|
|
37
|
+
raise InvalidSubmissionError(
|
|
38
|
+
"Expected all items in `submission` to be strings, but found non-string items!"
|
|
39
|
+
)
|
|
40
|
+
|
|
41
|
+
sorted_submission = transformed_submission.sort_values(by="id")
|
|
42
|
+
sorted_answers = transformed_answers.sort_values(by="id")
|
|
43
|
+
|
|
44
|
+
if (sorted_submission["id"].values != sorted_answers["id"].values).any():
|
|
45
|
+
raise InvalidSubmissionError(
|
|
46
|
+
f"Expected submission to have the same IDs as answers, but got a different set of IDs!"
|
|
47
|
+
)
|
|
48
|
+
|
|
49
|
+
y_preds_rle = sorted_submission["rle_mask"].values
|
|
50
|
+
y_trues_rle = sorted_answers["rle_mask"].values
|
|
51
|
+
|
|
52
|
+
try:
|
|
53
|
+
y_preds = np.array(
|
|
54
|
+
[rle_decode(rle, height=IMG_HEIGHT, width=IMG_WIDTH) for rle in y_preds_rle]
|
|
55
|
+
)
|
|
56
|
+
except AssertionError as e:
|
|
57
|
+
raise InvalidSubmissionError(f"Error decoding RLE masks: {e}")
|
|
58
|
+
|
|
59
|
+
y_trues = np.array([rle_decode(rle, height=IMG_HEIGHT, width=IMG_WIDTH) for rle in y_trues_rle])
|
|
60
|
+
|
|
61
|
+
scores = [iou_metric(y_trues[i], y_preds[i]) for i in range(len(y_trues))]
|
|
62
|
+
score = np.mean(scores)
|
|
63
|
+
|
|
64
|
+
return score
|
|
65
|
+
|
|
66
|
+
|
|
67
|
+
def iou_metric(y_true_in: ndarray, y_pred_in: ndarray) -> float:
|
|
68
|
+
"""
|
|
69
|
+
Adapted from https://www.kaggle.com/code/phoenigs/u-net-dropout-augmentation-stratification.
|
|
70
|
+
"""
|
|
71
|
+
|
|
72
|
+
if np.sum(y_true_in) == 0 and np.sum(y_pred_in) == 0:
|
|
73
|
+
return 1.0
|
|
74
|
+
|
|
75
|
+
if np.sum(y_true_in) == 0 and np.sum(y_pred_in) > 0:
|
|
76
|
+
return 0.0
|
|
77
|
+
|
|
78
|
+
labels = y_true_in
|
|
79
|
+
y_pred = y_pred_in
|
|
80
|
+
|
|
81
|
+
true_objects = 2
|
|
82
|
+
pred_objects = 2
|
|
83
|
+
|
|
84
|
+
intersection = np.histogram2d(
|
|
85
|
+
labels.flatten(),
|
|
86
|
+
y_pred.flatten(),
|
|
87
|
+
bins=(true_objects, pred_objects),
|
|
88
|
+
)[0]
|
|
89
|
+
|
|
90
|
+
# Compute areas (needed for finding the union between all objects)
|
|
91
|
+
area_true = np.histogram(labels, bins=true_objects)[0]
|
|
92
|
+
area_pred = np.histogram(y_pred, bins=pred_objects)[0]
|
|
93
|
+
area_true = np.expand_dims(area_true, -1)
|
|
94
|
+
area_pred = np.expand_dims(area_pred, 0)
|
|
95
|
+
|
|
96
|
+
# Compute union
|
|
97
|
+
union = area_true + area_pred - intersection
|
|
98
|
+
|
|
99
|
+
# Exclude background from the analysis
|
|
100
|
+
intersection = intersection[1:, 1:]
|
|
101
|
+
union = union[1:, 1:]
|
|
102
|
+
union[union == 0] = 1e-9
|
|
103
|
+
|
|
104
|
+
# Compute the intersection over union
|
|
105
|
+
iou = intersection / union
|
|
106
|
+
|
|
107
|
+
# Precision helper function
|
|
108
|
+
def precision_at(threshold, iou):
|
|
109
|
+
matches = iou > threshold
|
|
110
|
+
true_positives = np.sum(matches, axis=1) == 1 # Correct objects
|
|
111
|
+
false_positives = np.sum(matches, axis=0) == 0 # Missed objects
|
|
112
|
+
false_negatives = np.sum(matches, axis=1) == 0 # Extra objects
|
|
113
|
+
tp, fp, fn = np.sum(true_positives), np.sum(false_positives), np.sum(false_negatives)
|
|
114
|
+
return tp, fp, fn
|
|
115
|
+
|
|
116
|
+
# Loop over IoU thresholds
|
|
117
|
+
prec = []
|
|
118
|
+
|
|
119
|
+
for t in np.arange(0.5, 1.0, 0.05):
|
|
120
|
+
tp, fp, fn = precision_at(t, iou)
|
|
121
|
+
|
|
122
|
+
if (tp + fp + fn) > 0:
|
|
123
|
+
p = tp / (tp + fp + fn)
|
|
124
|
+
else:
|
|
125
|
+
p = 0
|
|
126
|
+
|
|
127
|
+
prec.append(p)
|
|
128
|
+
|
|
129
|
+
return np.mean(prec)
|
|
130
|
+
|
|
131
|
+
|
|
132
|
+
def iou_metric_batch(y_true_in, y_pred_in):
|
|
133
|
+
"""
|
|
134
|
+
Adapted from https://www.kaggle.com/code/phoenigs/u-net-dropout-augmentation-stratification.
|
|
135
|
+
"""
|
|
136
|
+
|
|
137
|
+
batch_size = y_true_in.shape[0]
|
|
138
|
+
metric = []
|
|
139
|
+
|
|
140
|
+
for batch in range(batch_size):
|
|
141
|
+
value = iou_metric(y_true_in[batch], y_pred_in[batch])
|
|
142
|
+
metric.append(value)
|
|
143
|
+
|
|
144
|
+
return np.mean(metric)
|
|
@@ -0,0 +1,158 @@
|
|
|
1
|
+
import shutil
|
|
2
|
+
from pathlib import Path
|
|
3
|
+
|
|
4
|
+
from sklearn.model_selection import train_test_split
|
|
5
|
+
|
|
6
|
+
from mlebench.utils import extract, read_csv
|
|
7
|
+
|
|
8
|
+
|
|
9
|
+
def prepare(raw: Path, public: Path, private: Path) -> None:
|
|
10
|
+
extract(raw / "competition_data.zip", raw)
|
|
11
|
+
|
|
12
|
+
old_train = read_csv(raw / "competition_data" / "train.csv")
|
|
13
|
+
old_train = old_train.fillna("")
|
|
14
|
+
|
|
15
|
+
# Original ratio is Train set - 4,000 samples; Test set - ~18,000 samples (82% ratio)
|
|
16
|
+
# We use a 0.25 ratio to get number of test samples into thousand OOM
|
|
17
|
+
new_train, new_test = train_test_split(old_train, test_size=0.25, random_state=0)
|
|
18
|
+
|
|
19
|
+
assert len(new_train) + len(new_test) == len(
|
|
20
|
+
old_train
|
|
21
|
+
), "Some samples were lost when creating the new train and test sets!"
|
|
22
|
+
|
|
23
|
+
new_train_ids = set(new_train["id"])
|
|
24
|
+
new_test_ids = set(new_test["id"])
|
|
25
|
+
|
|
26
|
+
assert new_train_ids.isdisjoint(
|
|
27
|
+
new_test_ids
|
|
28
|
+
), "`id` is not disjoint between train and test sets"
|
|
29
|
+
|
|
30
|
+
new_train.sort_values(by="id").to_csv(public / "train.csv", index=False)
|
|
31
|
+
new_test.sort_values(by="id").to_csv(private / "test.csv", index=False)
|
|
32
|
+
|
|
33
|
+
old_train_imgs = set((raw / "competition_data" / "train" / "images").glob("*.png"))
|
|
34
|
+
|
|
35
|
+
assert len(old_train_imgs) == len(
|
|
36
|
+
old_train
|
|
37
|
+
), "The number of images in the old train set doesn't match the number of training images!"
|
|
38
|
+
|
|
39
|
+
new_train_imgs = set(img for img in old_train_imgs if img.stem in new_train_ids)
|
|
40
|
+
new_test_imgs = set(img for img in old_train_imgs if img.stem in new_test_ids)
|
|
41
|
+
|
|
42
|
+
assert new_train_imgs.isdisjoint(
|
|
43
|
+
new_test_imgs
|
|
44
|
+
), "Images are not disjoint between train and test sets"
|
|
45
|
+
|
|
46
|
+
assert len(new_train_imgs) + len(new_test_imgs) == len(
|
|
47
|
+
old_train_imgs
|
|
48
|
+
), "Some images were lost when creating the new train and test sets!"
|
|
49
|
+
|
|
50
|
+
(public / "train" / "images").mkdir(parents=True, exist_ok=True)
|
|
51
|
+
(public / "train" / "masks").mkdir(parents=True, exist_ok=True)
|
|
52
|
+
|
|
53
|
+
for fpath in new_train_imgs:
|
|
54
|
+
shutil.copyfile(
|
|
55
|
+
src=fpath,
|
|
56
|
+
dst=public / "train" / "images" / fpath.name,
|
|
57
|
+
)
|
|
58
|
+
|
|
59
|
+
shutil.copyfile(
|
|
60
|
+
src=raw / "competition_data" / "train" / "masks" / fpath.name,
|
|
61
|
+
dst=public / "train" / "masks" / fpath.name,
|
|
62
|
+
)
|
|
63
|
+
|
|
64
|
+
(public / "test" / "images").mkdir(parents=True, exist_ok=True)
|
|
65
|
+
|
|
66
|
+
for fpath in new_test_imgs:
|
|
67
|
+
shutil.copyfile(
|
|
68
|
+
src=fpath,
|
|
69
|
+
dst=public / "test" / "images" / fpath.name,
|
|
70
|
+
)
|
|
71
|
+
|
|
72
|
+
sample_submission = new_test.drop(columns=["rle_mask"]).copy()
|
|
73
|
+
sample_submission["rle_mask"] = "1 1"
|
|
74
|
+
sample_submission.sort_values(by="id").to_csv(public / "sample_submission.csv", index=False)
|
|
75
|
+
|
|
76
|
+
old_depths = read_csv(raw / "depths.csv")
|
|
77
|
+
new_depths_mask = old_depths["id"].isin(new_train_ids)
|
|
78
|
+
new_depths = old_depths[new_depths_mask]
|
|
79
|
+
new_depths.sort_values(by="id").to_csv(public / "depths.csv", index=False)
|
|
80
|
+
|
|
81
|
+
# Sanity checks
|
|
82
|
+
|
|
83
|
+
assert (public / "train.csv").exists(), "`train.csv` doesn't exist!"
|
|
84
|
+
assert (public / "sample_submission.csv").exists(), "`sample_submission.csv` doesn't exist!"
|
|
85
|
+
assert (public / "depths.csv").exists(), "`depths.csv` doesn't exist!"
|
|
86
|
+
assert (public / "train").exists(), "`train` directory doesn't exist!"
|
|
87
|
+
assert (public / "test").exists(), "`test` directory doesn't exist!"
|
|
88
|
+
assert (private / "test.csv").exists(), "`test.csv` doesn't exist!"
|
|
89
|
+
|
|
90
|
+
actual_new_train_imgs = set(img.stem for img in (public / "train" / "images").glob("*.png"))
|
|
91
|
+
actual_new_train_masks = set(img.stem for img in (public / "train" / "masks").glob("*.png"))
|
|
92
|
+
|
|
93
|
+
assert len(actual_new_train_imgs) == len(
|
|
94
|
+
new_train
|
|
95
|
+
), "The number of images in the train set doesn't match the number of training images!"
|
|
96
|
+
|
|
97
|
+
assert len(actual_new_train_masks) == len(
|
|
98
|
+
new_train
|
|
99
|
+
), "The number of masks in the train set doesn't match the number of training masks!"
|
|
100
|
+
|
|
101
|
+
for new_train_id in new_train["id"]:
|
|
102
|
+
assert (
|
|
103
|
+
public / "train" / "images" / f"{new_train_id}.png"
|
|
104
|
+
).exists(), f"Expected `{new_train_id}.png` to exist in train images, but it doesn't!"
|
|
105
|
+
|
|
106
|
+
assert (
|
|
107
|
+
public / "train" / "masks" / f"{new_train_id}.png"
|
|
108
|
+
).exists(), f"Expected `{new_train_id}.png` to exist in train masks, but it doesn't!"
|
|
109
|
+
|
|
110
|
+
actual_new_test_imgs = set(img.stem for img in (public / "test" / "images").glob("*.png"))
|
|
111
|
+
|
|
112
|
+
assert not (
|
|
113
|
+
public / "test" / "masks"
|
|
114
|
+
).exists(), f"Expected `public / test / masks` to not exist, but it does!"
|
|
115
|
+
|
|
116
|
+
assert len(actual_new_test_imgs) == len(
|
|
117
|
+
new_test
|
|
118
|
+
), "The number of images in the test set doesn't match the number of test images!"
|
|
119
|
+
|
|
120
|
+
for new_test_id in new_test["id"]:
|
|
121
|
+
assert (
|
|
122
|
+
public / "test" / "images" / f"{new_test_id}.png"
|
|
123
|
+
).exists(), f"Expected `{new_test_id}.png` to exist in test images, but it doesn't!"
|
|
124
|
+
|
|
125
|
+
assert not (
|
|
126
|
+
public / "test" / "masks" / f"{new_test_id}.png"
|
|
127
|
+
).exists(), f"Expected `{new_test_id}.png` to exist in test masks, but it doesn't!"
|
|
128
|
+
|
|
129
|
+
assert actual_new_train_imgs.isdisjoint(
|
|
130
|
+
actual_new_test_imgs
|
|
131
|
+
), "Expected no overlap in images between the new train and test sets, but there is!"
|
|
132
|
+
|
|
133
|
+
actual_sample_submission = read_csv(public / "sample_submission.csv")
|
|
134
|
+
actual_new_test = read_csv(private / "test.csv")
|
|
135
|
+
|
|
136
|
+
assert len(actual_sample_submission) == len(
|
|
137
|
+
actual_new_test
|
|
138
|
+
), "The number of samples in the sample submission doesn't match the number of samples in the test set!"
|
|
139
|
+
|
|
140
|
+
assert set(actual_sample_submission["id"]) == set(
|
|
141
|
+
actual_new_test["id"]
|
|
142
|
+
), "The ids in the sample submission don't match the ids in the test set!"
|
|
143
|
+
|
|
144
|
+
assert len(actual_new_test_imgs) == len(
|
|
145
|
+
actual_new_test
|
|
146
|
+
), "The number of images in the test set doesn't match the number of test images!"
|
|
147
|
+
|
|
148
|
+
assert (
|
|
149
|
+
set(actual_new_test["id"]) == actual_new_test_imgs
|
|
150
|
+
), "The ids in the test set don't match the test images!"
|
|
151
|
+
|
|
152
|
+
assert new_train.applymap(
|
|
153
|
+
lambda x: isinstance(x, str)
|
|
154
|
+
).values.all(), "Not all elements in the DataFrame are strings!"
|
|
155
|
+
|
|
156
|
+
assert new_test.applymap(
|
|
157
|
+
lambda x: isinstance(x, str)
|
|
158
|
+
).values.all(), "Not all elements in the DataFrame are strings!"
|