drizzle 2.0.1__cp312-cp312-macosx_10_13_x86_64.whl

drizzle/tests/test_utils.py

@@ -0,0 +1,238 @@
+import numpy as np
+import pytest
+from numpy.testing import assert_almost_equal, assert_equal
+
+from drizzle.utils import (
+    _estimate_pixel_scale,
+    calc_pixmap,
+    decode_context,
+    estimate_pixel_scale_ratio,
+)
+
+from .helpers import wcs_from_file
+
+
+def test_map_rectangular():
+    """
+    Make sure the initial index array has correct values
+    """
+    naxis1 = 1000
+    naxis2 = 10
+
+    pixmap = np.indices((naxis1, naxis2), dtype='float32')
+    pixmap = pixmap.transpose()
+
+    assert_equal(pixmap[5, 500], (500, 5))
+
+
+@pytest.mark.parametrize(
+    "wcs_type", ["fits", "gwcs"]
+)
+def test_map_to_self(wcs_type):
+    """
+    Map a pixel array to itself. Should return the same array.
+    """
+    input_wcs = wcs_from_file("j8bt06nyq_sip_flt.fits", ext=1, wcs_type=wcs_type)
+    shape = input_wcs.array_shape
+
+    ok_pixmap = np.indices(shape, dtype='float64')
+    ok_pixmap = ok_pixmap.transpose()
+
+    pixmap = calc_pixmap(input_wcs, input_wcs)
+
+    # Got x-y transpose right
+    assert_equal(pixmap.shape, ok_pixmap.shape)
+
+    # Mapping an array to itself
+    assert_almost_equal(pixmap, ok_pixmap, decimal=5)
+
+    # user-provided shape
+    pixmap = calc_pixmap(input_wcs, input_wcs, (12, 34))
+    assert_equal(pixmap.shape, (12, 34, 2))
+
+    # Check that an exception is raised for WCS without pixel_shape and
+    # bounding_box:
+    input_wcs.pixel_shape = None
+    input_wcs.bounding_box = None
+    with pytest.raises(ValueError):
+        calc_pixmap(input_wcs, input_wcs)
+
+    # user-provided shape when array_shape is not set:
+    pixmap = calc_pixmap(input_wcs, input_wcs, (12, 34))
+    assert_equal(pixmap.shape, (12, 34, 2))
+
+    # from bounding box:
+    input_wcs.bounding_box = ((5.3, 33.5), (2.8, 11.5))
+    pixmap = calc_pixmap(input_wcs, input_wcs)
+    assert_equal(pixmap.shape, (12, 34, 2))
+
+    # from bounding box and pixel_shape (the later takes precedence):
+    input_wcs.array_shape = shape
+    pixmap = calc_pixmap(input_wcs, input_wcs)
+    assert_equal(pixmap.shape, ok_pixmap.shape)
+
+
+@pytest.mark.parametrize(
+    "wcs_type", ["fits", "gwcs"]
+)
+def test_translated_map(wcs_type):
+    """
+    Map a pixel array to  at translated array.
+    """
+    first_wcs = wcs_from_file(
+        "j8bt06nyq_sip_flt.fits",
+        ext=1,
+        wcs_type=wcs_type
+    )
+    second_wcs = wcs_from_file(
+        "j8bt06nyq_sip_flt.fits",
+        ext=1,
+        crpix_shift=(-2, -2),  # shift loaded WCS by adding this to CRPIX
+        wcs_type=wcs_type
+    )
+
+    ok_pixmap = np.indices(first_wcs.array_shape, dtype='float32') - 2.0
+    ok_pixmap = ok_pixmap.transpose()
+
+    pixmap = calc_pixmap(first_wcs, second_wcs)
+
+    # Got x-y transpose right
+    assert_equal(pixmap.shape, ok_pixmap.shape)
+    # Mapping an array to a translated array
+    assert_almost_equal(pixmap[2:, 2:], ok_pixmap[2:, 2:], decimal=5)
+
+
+def test_disable_gwcs_bbox():
+    """
+    Map a pixel array to a translated version ofitself.
+    """
+    first_wcs = wcs_from_file(
+        "j8bt06nyq_sip_flt.fits",
+        ext=1,
+        wcs_type="gwcs"
+    )
+    second_wcs = wcs_from_file(
+        "j8bt06nyq_sip_flt.fits",
+        ext=1,
+        crpix_shift=(-2, -2),  # shift loaded WCS by adding this to CRPIX
+        wcs_type="gwcs"
+    )
+
+    ok_pixmap = np.indices(first_wcs.array_shape, dtype='float64') - 2.0
+    ok_pixmap = ok_pixmap.transpose()
+
+    # Mapping an array to a translated array
+
+    # disable both bounding boxes:
+    pixmap = calc_pixmap(first_wcs, second_wcs, disable_bbox="both")
+    assert_almost_equal(pixmap[2:, 2:], ok_pixmap[2:, 2:], decimal=5)
+    assert np.all(np.isfinite(pixmap[:2, :2]))
+    assert np.all(np.isfinite(pixmap[-2:, -2:]))
+    # check bbox was restored
+    assert first_wcs.bounding_box is not None
+    assert second_wcs.bounding_box is not None
+
+    # disable "from" bounding box:
+    pixmap = calc_pixmap(second_wcs, first_wcs, disable_bbox="from")
+    assert_almost_equal(pixmap[:-2, :-2], ok_pixmap[:-2, :-2] + 4.0, decimal=5)
+    assert np.all(np.logical_not(np.isfinite(pixmap[-2:, -2:])))
+    # check bbox was restored
+    assert first_wcs.bounding_box is not None
+    assert second_wcs.bounding_box is not None
+
+    # disable "to" bounding boxes:
+    pixmap = calc_pixmap(first_wcs, second_wcs, disable_bbox="to")
+    assert_almost_equal(pixmap[2:, 2:], ok_pixmap[2:, 2:], decimal=5)
+    assert np.all(np.isfinite(pixmap[:2, :2]))
+    assert np.all(pixmap[:2, :2] < 0.0)
+    assert np.all(np.isfinite(pixmap[-2:, -2:]))
+    # check bbox was restored
+    assert first_wcs.bounding_box is not None
+    assert second_wcs.bounding_box is not None
+
+    # enable all bounding boxes:
+    pixmap = calc_pixmap(first_wcs, second_wcs, disable_bbox="none")
+    assert_almost_equal(pixmap[2:, 2:], ok_pixmap[2:, 2:], decimal=5)
+    assert np.all(np.logical_not(np.isfinite(pixmap[:2, :2])))
+    # check bbox was restored
+    assert first_wcs.bounding_box is not None
+    assert second_wcs.bounding_box is not None
+
+
+def test_estimate_pixel_scale_ratio():
+    w = wcs_from_file("j8bt06nyq_flt.fits", ext=1)
+    pscale = estimate_pixel_scale_ratio(w, w, w.wcs.crpix, (0, 0))
+    assert abs(pscale - 0.9999999916964737) < 1.0e-9
+
+
+def test_estimate_pixel_scale_no_refpix():
+    # create a WCS without higher order (polynomial) distortions:
+    w = wcs_from_file("j8bt06nyq_sip_flt.fits", ext=1)
+    w.sip = None
+    w.det2im1 = None
+    w.det2im2 = None
+    w.cpdis1 = None
+    w.cpdis2 = None
+    pixel_shape = w.pixel_shape[:]
+
+    ref_pscale = _estimate_pixel_scale(w, w.wcs.crpix)
+
+    if hasattr(w, 'bounding_box'):
+        del w.bounding_box
+    pscale1 = _estimate_pixel_scale(w, None)
+    assert np.allclose(ref_pscale, pscale1, atol=0.0, rtol=1.0e-8)
+
+    w.bounding_box = None
+    w.pixel_shape = None
+    pscale2 = _estimate_pixel_scale(w, None)
+    assert np.allclose(pscale1, pscale2, atol=0.0, rtol=1.0e-8)
+
+    w.pixel_shape = pixel_shape
+    pscale3 = _estimate_pixel_scale(w, None)
+    assert np.allclose(pscale1, pscale3, atol=0.0, rtol=1.0e-14)
+
+    w.bounding_box = ((-0.5, pixel_shape[0] - 0.5), (-0.5, pixel_shape[1] - 0.5))
+    pscale4 = _estimate_pixel_scale(w, None)
+    assert np.allclose(pscale3, pscale4, atol=0.0, rtol=1.0e-8)
+
+
+def test_decode_context():
+    ctx = np.array(
+        [[[0, 0, 0, 0, 0, 0],
+          [0, 0, 0, 36196864, 0, 0],
+          [0, 0, 0, 0, 0, 0],
+          [0, 0, 0, 0, 0, 0],
+          [0, 0, 537920000, 0, 0, 0]],
+         [[0, 0, 0, 0, 0, 0,],
+          [0, 0, 0, 67125536, 0, 0],
+          [0, 0, 0, 0, 0, 0],
+          [0, 0, 0, 0, 0, 0],
+          [0, 0, 163856, 0, 0, 0]],
+         [[0, 0, 0, 0, 0, 0],
+          [0, 0, 0, 8203, 0, 0],
+          [0, 0, 0, 0, 0, 0],
+          [0, 0, 0, 0, 0, 0],
+          [0, 0, 32865, 0, 0, 0]]],
+        dtype=np.int32
+    )
+
+    idx1, idx2 = decode_context(ctx, [3, 2], [1, 4])
+
+    assert sorted(idx1) == [9, 12, 14, 19, 21, 25, 37, 40, 46, 58, 64, 65, 67, 77]
+    assert sorted(idx2) == [9, 20, 29, 36, 47, 49, 64, 69, 70, 79]
+
+    # context array must be 3D:
+    with pytest.raises(ValueError):
+        decode_context(ctx[0], [3, 2], [1, 4])
+
+    # pixel coordinates must be integer:
+    with pytest.raises(ValueError):
+        decode_context(ctx, [3.0, 2], [1, 4])
+
+    # coordinate lists must be equal in length:
+    with pytest.raises(ValueError):
+        decode_context(ctx, [3, 2], [1, 4, 5])
+
+    # coordinate lists must be 1D:
+    with pytest.raises(ValueError):
+        decode_context(ctx, [[3, 2]], [[1, 4]])

drizzle/util.py

@@ -0,0 +1,34 @@
+"""
+Module ``util`` has been deprecated.
+"""
+import warnings
+
+warnings.warn(
+    "Module 'drizzle.util' has been deprecated since version 2.0.0 "
+    "and it will be removed in a future release. "
+    "Please replace calls to 'util.is_blank()' with alternative "
+    "implementation.",
+    DeprecationWarning
+)
+
+
+def is_blank(value):
+    """
+    Determines whether or not a value is considered 'blank'.
+
+    Parameters
+    ----------
+    value : str
+        The value to check
+
+    Returns
+    -------
+    True or False
+    """
+    warnings.warn(
+        "'is_blank()' has been deprecated since version 2.0.0 "
+        "and it will be removed in a future release. "
+        "Please replace calls to 'is_blank()' with alternative implementation.",
+        DeprecationWarning
+    )
+    return value.strip() == ""

drizzle/utils.py

@@ -0,0 +1,285 @@
+import math
+
+import numpy as np
+
+__all__ = ["calc_pixmap", "decode_context", "estimate_pixel_scale_ratio"]
+
+_DEG2RAD = math.pi / 180.0
+
+
+def calc_pixmap(wcs_from, wcs_to, shape=None, disable_bbox="to"):
+    """
+    Calculate a discretized on a grid mapping between the pixels of two images
+    using provided WCS of the original ("from") image and the destination ("to")
+    image.
+
+    .. note::
+       This function assumes that output frames of ``wcs_from`` and ``wcs_to``
+       WCS have the same units.
+
+    Parameters
+    ----------
+    wcs_from : wcs
+        A WCS object representing the coordinate system you are
+        converting from. This object's ``array_shape`` (or ``pixel_shape``)
+        property will be used to define the shape of the pixel map array.
+        If ``shape`` parameter is provided, it will take precedence
+        over this object's ``array_shape`` value.
+
+    wcs_to : wcs
+        A WCS object representing the coordinate system you are
+        converting to.
+
+    shape : tuple, None, optional
+        A tuple of integers indicating the shape of the output array in the
+        ``numpy.ndarray`` order. When provided, it takes precedence over the
+        ``wcs_from.array_shape`` property.
+
+    disable_bbox : {"to", "from", "both", "none"}, optional
+        Indicates whether to use or not to use the bounding box of either
+        (both) ``wcs_from`` or (and) ``wcs_to`` when computing pixel map. When
+        ``disable_bbox`` is "none", pixel coordinates outside of the bounding
+        box are set to `NaN` only if ``wcs_from`` or (and) ``wcs_to`` sets
+        world coordinates to NaN when input pixel coordinates are outside of
+        the bounding box.
+
+    Returns
+    -------
+    pixmap : numpy.ndarray
+        A three dimensional array representing the transformation between
+        the two. The last dimension is of length two and contains the x and
+        y coordinates of a pixel center, repectively. The other two coordinates
+        correspond to the two coordinates of the image the first WCS is from.
+
+    Raises
+    ------
+    ValueError
+        A `ValueError` is raised when output pixel map shape cannot be
+        determined from provided inputs.
+
+    Notes
+    -----
+    When ``shape`` is not provided and ``wcs_from.array_shape`` is not set
+    (i.e., it is `None`), `calc_pixmap` will attempt to determine pixel map
+    shape from the ``bounding_box`` property of the input ``wcs_from`` object.
+    If ``bounding_box`` is not available, a `ValueError` will be raised.
+
+    """
+    if (bbox_from := getattr(wcs_from, "bounding_box", None)) is not None:
+        try:
+            # to avoid dependency on astropy just to check whether
+            # the bounding box is an instance of
+            # modeling.bounding_box.ModelBoundingBox, we try to
+            # directly use and bounding_box(order='F') and if it fails,
+            # fall back to converting the bounding box to a tuple
+            # (of intervals):
+            bbox_from = bbox_from.bounding_box(order='F')
+        except AttributeError:
+            bbox_from = tuple(bbox_from)
+
+    if (bbox_to := getattr(wcs_to, "bounding_box", None)) is not None:
+        try:
+            # to avoid dependency on astropy just to check whether
+            # the bounding box is an instance of
+            # modeling.bounding_box.ModelBoundingBox, we try to
+            # directly use and bounding_box(order='F') and if it fails,
+            # fall back to converting the bounding box to a tuple
+            # (of intervals):
+            bbox_to = bbox_to.bounding_box(order='F')
+        except AttributeError:
+            bbox_to = tuple(bbox_to)
+
+    if shape is None:
+        shape = wcs_from.array_shape
+        if shape is None and bbox_from is not None:
+            if (nd := np.ndim(bbox_from)) == 1:
+                bbox_from = (bbox_from, )
+            if nd > 1:
+                shape = tuple(
+                    int(math.ceil(lim[1] + 0.5)) for lim in bbox_from[::-1]
+                )
+
+    if shape is None:
+        raise ValueError(
+            'The "from" WCS must have pixel_shape property set.'
+        )
+
+    y, x = np.indices(shape, dtype=np.float64)
+
+    # temporarily disable the bounding box for the "from" WCS:
+    if disable_bbox in ["from", "both"] and bbox_from is not None:
+        wcs_from.bounding_box = None
+    if disable_bbox in ["to", "both"] and bbox_to is not None:
+        wcs_to.bounding_box = None
+    try:
+        x, y = wcs_to.world_to_pixel_values(
+            *wcs_from.pixel_to_world_values(x, y)
+        )
+    finally:
+        if bbox_from is not None:
+            wcs_from.bounding_box = bbox_from
+        if bbox_to is not None:
+            wcs_to.bounding_box = bbox_to
+
+    pixmap = np.dstack([x, y])
+    return pixmap
+
+
+def estimate_pixel_scale_ratio(wcs_from, wcs_to, refpix_from=None, refpix_to=None):
+    """
+    Compute the ratio of the pixel scale of the "to" WCS at the ``refpix_to``
+    position to the pixel scale of the "from" WCS at the ``refpix_from``
+    position. Pixel scale ratio,
+    when requested, is computed near the centers of the bounding box
+    (a property of the WCS object) or near ``refpix_*`` coordinates
+    if supplied.
+
+    Pixel scale is estimated as the square root of pixel's area, i.e.,
+    pixels are assumed to have a square shape at the reference
+    pixel position. If input reference pixel position for a WCS is `None`,
+    it will be taken as the center of the bounding box
+    if ``wcs_*`` has a bounding box defined, or as the center of the box
+    defined by the ``pixel_shape`` attribute of the input WCS if
+    ``pixel_shape`` is defined (not `None`), or at pixel coordinates
+    ``(0, 0)``.
+
+    Parameters
+    ----------
+    wcs_from : wcs
+        A WCS object representing the coordinate system you are
+        converting from. This object *must* have ``pixel_shape`` property
+        defined.
+
+    wcs_to : wcs
+        A WCS object representing the coordinate system you are
+        converting to.
+
+    refpix_from : numpy.ndarray, tuple, list
+        Image coordinates of the reference pixel near which pixel scale should
+        be computed in the "from" image. In FITS WCS this could be, for example,
+        the value of CRPIX of the ``wcs_from`` WCS.
+
+    refpix_to : numpy.ndarray, tuple, list
+        Image coordinates of the reference pixel near which pixel scale should
+        be computed in the "to" image. In FITS WCS this could be, for example,
+        the value of CRPIX of the ``wcs_to`` WCS.
+
+    Returns
+    -------
+    pixel_scale_ratio : float
+        Estimate the ratio of "to" to "from" WCS pixel scales. This value is
+        returned only when ``estimate_pixel_scale_ratio`` is `True`.
+
+    """
+    pscale_ratio = (_estimate_pixel_scale(wcs_to, refpix_to) /
+                    _estimate_pixel_scale(wcs_from, refpix_from))
+    return pscale_ratio
+
+
+def _estimate_pixel_scale(wcs, refpix):
+    # estimate pixel scale (in rad) using approximate algorithm
+    # from https://trs.jpl.nasa.gov/handle/2014/40409
+    if refpix is None:
+        if hasattr(wcs, 'bounding_box') and wcs.bounding_box is not None:
+            refpix = np.mean(wcs.bounding_box, axis=-1)
+        else:
+            if wcs.pixel_shape:
+                refpix = np.array([(i - 1) // 2 for i in wcs.pixel_shape])
+            else:
+                refpix = np.zeros(wcs.pixel_n_dim)
+
+    else:
+        refpix = np.asarray(refpix)
+
+    l1, phi1 = wcs.pixel_to_world_values(*(refpix - 0.5))
+    l2, phi2 = wcs.pixel_to_world_values(*(refpix + [-0.5, 0.5]))
+    l3, phi3 = wcs.pixel_to_world_values(*(refpix + 0.5))
+    l4, phi4 = wcs.pixel_to_world_values(*(refpix + [0.5, -0.5]))
+    area = _DEG2RAD * abs(
+        0.5 * (
+            (l4 - l2) * (math.sin(_DEG2RAD * phi1) - math.sin(_DEG2RAD * phi3)) +
+            (l1 - l3) * (math.sin(_DEG2RAD * phi2) - math.sin(_DEG2RAD * phi4))
+        )
+    )
+    return math.sqrt(area)
+
+
+def decode_context(context, x, y):
+    """Get 0-based indices of input images that contributed to (resampled)
+    output pixel with coordinates ``x`` and ``y``.
+
+    Parameters
+    ----------
+    context: numpy.ndarray
+        A 3D `~numpy.ndarray` of integral data type.
+
+    x: int, list of integers, numpy.ndarray of integers
+        X-coordinate of pixels to decode (3rd index into the ``context`` array)
+
+    y: int, list of integers, numpy.ndarray of integers
+        Y-coordinate of pixels to decode (2nd index into the ``context`` array)
+
+    Returns
+    -------
+    A list of `numpy.ndarray` objects each containing indices of input images
+    that have contributed to an output pixel with coordinates ``x`` and ``y``.
+    The length of returned list is equal to the number of input coordinate
+    arrays ``x`` and ``y``.
+
+    Examples
+    --------
+    An example context array for an output image of array shape ``(5, 6)``
+    obtained by resampling 80 input images.
+
+    >>> import numpy as np
+    >>> from drizzle.utils import decode_context
+    >>> ctx = np.array(
+    ...     [[[0, 0, 0, 0, 0, 0],
+    ...       [0, 0, 0, 36196864, 0, 0],
+    ...       [0, 0, 0, 0, 0, 0],
+    ...       [0, 0, 0, 0, 0, 0],
+    ...       [0, 0, 537920000, 0, 0, 0]],
+    ...      [[0, 0, 0, 0, 0, 0,],
+    ...       [0, 0, 0, 67125536, 0, 0],
+    ...       [0, 0, 0, 0, 0, 0],
+    ...       [0, 0, 0, 0, 0, 0],
+    ...       [0, 0, 163856, 0, 0, 0]],
+    ...      [[0, 0, 0, 0, 0, 0],
+    ...       [0, 0, 0, 8203, 0, 0],
+    ...       [0, 0, 0, 0, 0, 0],
+    ...       [0, 0, 0, 0, 0, 0],
+    ...       [0, 0, 32865, 0, 0, 0]]],
+    ...     dtype=np.int32
+    ... )
+    >>> decode_context(ctx, [3, 2], [1, 4])
+    [array([ 9, 12, 14, 19, 21, 25, 37, 40, 46, 58, 64, 65, 67, 77]),
+     array([ 9, 20, 29, 36, 47, 49, 64, 69, 70, 79])]
+
+    """
+    if context.ndim != 3:
+        raise ValueError("'context' must be a 3D array.")
+
+    x = np.atleast_1d(x)
+    y = np.atleast_1d(y)
+
+    if x.size != y.size:
+        raise ValueError("Coordinate arrays must have equal length.")
+
+    if x.ndim != 1:
+        raise ValueError("Coordinates must be scalars or 1D arrays.")
+
+    if not (np.issubdtype(x.dtype, np.integer) and
+            np.issubdtype(y.dtype, np.integer)):
+        raise ValueError('Pixel coordinates must be integer values')
+
+    nbits = 8 * context.dtype.itemsize
+    one = np.array(1, context.dtype)
+    flags = np.array([one << i for i in range(nbits)])
+
+    idx = []
+    for xi, yi in zip(x, y):
+        idx.append(
+            np.flatnonzero(np.bitwise_and.outer(context[:, yi, xi], flags))
+        )
+
+    return idx

drizzle-2.0.1.dist-info/LICENSE.rst

@@ -0,0 +1,31 @@
+Copyright (C) 2011,2014 Association of Universities for Research in
+Astronomy (AURA)
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions
+are met:
+
+    1. Redistributions of source code must retain the above
+      copyright notice, this list of conditions and the following
+      disclaimer.
+
+    2. Redistributions in binary form must reproduce the above
+      copyright notice, this list of conditions and the following
+      disclaimer in the documentation and/or other materials
+      provided with the distribution.
+
+    3. The name of AURA and its representatives may not be used to
+      endorse or promote products derived from this software without
+      specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY AURA ``AS IS'' AND ANY EXPRESS OR
+IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL AURA BE LIABLE FOR ANY DIRECT,
+INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
+OF THE POSSIBILITY OF SUCH DAMAGE.