docling 2.59.0__py3-none-any.whl → 2.60.0__py3-none-any.whl

docling/pipeline/threaded_standard_pdf_pipeline.py

@@ -1,647 +1,5 @@
-# threaded_standard_pdf_pipeline.py
-"""Thread-safe, production-ready PDF pipeline
-================================================
-A self-contained, thread-safe PDF conversion pipeline exploiting parallelism between pipeline stages and models.
+from docling.pipeline.standard_pdf_pipeline import StandardPdfPipeline
 
-* **Per-run isolation** - every :py:meth:`execute` call uses its own bounded queues and worker
-  threads so that concurrent invocations never share mutable state.
-* **Deterministic run identifiers** - pages are tracked with an internal *run-id* instead of
-  relying on :pyfunc:`id`, which may clash after garbage collection.
-* **Explicit back-pressure & shutdown** - producers block on full queues; queue *close()*
-  propagates downstream so stages terminate deterministically without sentinels.
-* **Minimal shared state** - heavyweight models are initialised once per pipeline instance
-  and only read by worker threads; no runtime mutability is exposed.
-* **Strict typing & clean API usage** - code is fully annotated and respects *coding_rules.md*.
-"""
 
-from __future__ import annotations
-
-import itertools
-import logging
-import threading
-import time
-import warnings
-from collections import defaultdict, deque
-from dataclasses import dataclass, field
-from pathlib import Path
-from typing import Any, Iterable, List, Optional, Sequence, Tuple, cast
-
-import numpy as np
-from docling_core.types.doc import DocItem, ImageRef, PictureItem, TableItem
-
-from docling.backend.abstract_backend import AbstractDocumentBackend
-from docling.backend.pdf_backend import PdfDocumentBackend
-from docling.datamodel.base_models import AssembledUnit, ConversionStatus, Page
-from docling.datamodel.document import ConversionResult
-from docling.datamodel.pipeline_options import ThreadedPdfPipelineOptions
-from docling.datamodel.settings import settings
-from docling.models.code_formula_model import CodeFormulaModel, CodeFormulaModelOptions
-from docling.models.factories import get_ocr_factory
-from docling.models.layout_model import LayoutModel
-from docling.models.page_assemble_model import PageAssembleModel, PageAssembleOptions
-from docling.models.page_preprocessing_model import (
-    PagePreprocessingModel,
-    PagePreprocessingOptions,
-)
-from docling.models.readingorder_model import ReadingOrderModel, ReadingOrderOptions
-from docling.models.table_structure_model import TableStructureModel
-from docling.pipeline.base_pipeline import ConvertPipeline
-from docling.utils.profiling import ProfilingScope, TimeRecorder
-from docling.utils.utils import chunkify
-
-_log = logging.getLogger(__name__)
-
-# ──────────────────────────────────────────────────────────────────────────────
-# Helper data structures
-# ──────────────────────────────────────────────────────────────────────────────
-
-
-@dataclass
-class ThreadedItem:
-    """Envelope that travels between pipeline stages."""
-
-    payload: Optional[Page]
-    run_id: int  # Unique per *execute* call, monotonic across pipeline instance
-    page_no: int
-    conv_res: ConversionResult
-    error: Optional[Exception] = None
-    is_failed: bool = False
-
-
-@dataclass
-class ProcessingResult:
-    """Aggregated outcome of a pipeline run."""
-
-    pages: List[Page] = field(default_factory=list)
-    failed_pages: List[Tuple[int, Exception]] = field(default_factory=list)
-    total_expected: int = 0
-
-    @property
-    def success_count(self) -> int:
-        return len(self.pages)
-
-    @property
-    def failure_count(self) -> int:
-        return len(self.failed_pages)
-
-    @property
-    def is_partial_success(self) -> bool:
-        return 0 < self.success_count < self.total_expected
-
-    @property
-    def is_complete_failure(self) -> bool:
-        return self.success_count == 0 and self.failure_count > 0
-
-
-class ThreadedQueue:
-    """Bounded queue with blocking put/ get_batch and explicit *close()* semantics."""
-
-    __slots__ = ("_closed", "_items", "_lock", "_max", "_not_empty", "_not_full")
-
-    def __init__(self, max_size: int) -> None:
-        self._max: int = max_size
-        self._items: deque[ThreadedItem] = deque()
-        self._lock = threading.Lock()
-        self._not_full = threading.Condition(self._lock)
-        self._not_empty = threading.Condition(self._lock)
-        self._closed = False
-
-    # ---------------------------------------------------------------- put()
-    def put(self, item: ThreadedItem, timeout: Optional[float] | None = None) -> bool:
-        """Block until queue accepts *item* or is closed.  Returns *False* if closed."""
-        with self._not_full:
-            if self._closed:
-                return False
-            start = time.monotonic()
-            while len(self._items) >= self._max and not self._closed:
-                if timeout is not None:
-                    remaining = timeout - (time.monotonic() - start)
-                    if remaining <= 0:
-                        return False
-                    self._not_full.wait(remaining)
-                else:
-                    self._not_full.wait()
-            if self._closed:
-                return False
-            self._items.append(item)
-            self._not_empty.notify()
-            return True
-
-    # ------------------------------------------------------------ get_batch()
-    def get_batch(
-        self, size: int, timeout: Optional[float] | None = None
-    ) -> List[ThreadedItem]:
-        """Return up to *size* items.  Blocks until ≥1 item present or queue closed/timeout."""
-        with self._not_empty:
-            start = time.monotonic()
-            while not self._items and not self._closed:
-                if timeout is not None:
-                    remaining = timeout - (time.monotonic() - start)
-                    if remaining <= 0:
-                        return []
-                    self._not_empty.wait(remaining)
-                else:
-                    self._not_empty.wait()
-            batch: List[ThreadedItem] = []
-            while self._items and len(batch) < size:
-                batch.append(self._items.popleft())
-            if batch:
-                self._not_full.notify_all()
-            return batch
-
-    # ---------------------------------------------------------------- close()
-    def close(self) -> None:
-        with self._lock:
-            self._closed = True
-            self._not_empty.notify_all()
-            self._not_full.notify_all()
-
-    # -------------------------------------------------------------- property
-    @property
-    def closed(self) -> bool:
-        return self._closed
-
-
-class ThreadedPipelineStage:
-    """A single pipeline stage backed by one worker thread."""
-
-    def __init__(
-        self,
-        *,
-        name: str,
-        model: Any,
-        batch_size: int,
-        batch_timeout: float,
-        queue_max_size: int,
-    ) -> None:
-        self.name = name
-        self.model = model
-        self.batch_size = batch_size
-        self.batch_timeout = batch_timeout
-        self.input_queue = ThreadedQueue(queue_max_size)
-        self._outputs: list[ThreadedQueue] = []
-        self._thread: Optional[threading.Thread] = None
-        self._running = False
-
-    # ---------------------------------------------------------------- wiring
-    def add_output_queue(self, q: ThreadedQueue) -> None:
-        self._outputs.append(q)
-
-    # -------------------------------------------------------------- lifecycle
-    def start(self) -> None:
-        if self._running:
-            return
-        self._running = True
-        self._thread = threading.Thread(
-            target=self._run, name=f"Stage-{self.name}", daemon=True
-        )
-        self._thread.start()
-
-    def stop(self) -> None:
-        if not self._running:
-            return
-        self._running = False
-        self.input_queue.close()
-        if self._thread is not None:
-            self._thread.join(timeout=30.0)
-            if self._thread.is_alive():
-                _log.warning("Stage %s did not terminate cleanly within 30s", self.name)
-
-    # ------------------------------------------------------------------ _run
-    def _run(self) -> None:
-        try:
-            while self._running:
-                batch = self.input_queue.get_batch(self.batch_size, self.batch_timeout)
-                if not batch and self.input_queue.closed:
-                    break
-                processed = self._process_batch(batch)
-                self._emit(processed)
-        except Exception:  # pragma: no cover - top-level guard
-            _log.exception("Fatal error in stage %s", self.name)
-        finally:
-            for q in self._outputs:
-                q.close()
-
-    # ----------------------------------------------------- _process_batch()
-    def _process_batch(self, batch: Sequence[ThreadedItem]) -> list[ThreadedItem]:
-        """Run *model* on *batch* grouped by run_id to maximise batching."""
-        groups: dict[int, list[ThreadedItem]] = defaultdict(list)
-        for itm in batch:
-            groups[itm.run_id].append(itm)
-
-        result: list[ThreadedItem] = []
-        for rid, items in groups.items():
-            good: list[ThreadedItem] = [i for i in items if not i.is_failed]
-            if not good:
-                result.extend(items)
-                continue
-            try:
-                # Filter out None payloads and ensure type safety
-                pages_with_payloads = [
-                    (i, i.payload) for i in good if i.payload is not None
-                ]
-                if len(pages_with_payloads) != len(good):
-                    # Some items have None payloads, mark all as failed
-                    for it in items:
-                        it.is_failed = True
-                        it.error = RuntimeError("Page payload is None")
-                    result.extend(items)
-                    continue
-
-                pages: List[Page] = [payload for _, payload in pages_with_payloads]
-                processed_pages = list(self.model(good[0].conv_res, pages))  # type: ignore[arg-type]
-                if len(processed_pages) != len(pages):  # strict mismatch guard
-                    raise RuntimeError(
-                        f"Model {self.name} returned wrong number of pages"
-                    )
-                for idx, page in enumerate(processed_pages):
-                    result.append(
-                        ThreadedItem(
-                            payload=page,
-                            run_id=rid,
-                            page_no=good[idx].page_no,
-                            conv_res=good[idx].conv_res,
-                        )
-                    )
-            except Exception as exc:
-                _log.error("Stage %s failed for run %d: %s", self.name, rid, exc)
-                for it in items:
-                    it.is_failed = True
-                    it.error = exc
-                result.extend(items)
-        return result
-
-    # -------------------------------------------------------------- _emit()
-    def _emit(self, items: Iterable[ThreadedItem]) -> None:
-        for item in items:
-            for q in self._outputs:
-                if not q.put(item):
-                    _log.error("Output queue closed while emitting from %s", self.name)
-
-
-@dataclass
-class RunContext:
-    """Wiring for a single *execute* call."""
-
-    stages: list[ThreadedPipelineStage]
-    first_stage: ThreadedPipelineStage
-    output_queue: ThreadedQueue
-
-
-# ──────────────────────────────────────────────────────────────────────────────
-# Main pipeline
-# ──────────────────────────────────────────────────────────────────────────────
-
-
-class ThreadedStandardPdfPipeline(ConvertPipeline):
-    """High-performance PDF pipeline with multi-threaded stages."""
-
-    def __init__(self, pipeline_options: ThreadedPdfPipelineOptions) -> None:
-        super().__init__(pipeline_options)
-        self.pipeline_options: ThreadedPdfPipelineOptions = pipeline_options
-        self._run_seq = itertools.count(1)  # deterministic, monotonic run ids
-
-        # initialise heavy models once
-        self._init_models()
-
-    # ────────────────────────────────────────────────────────────────────────
-    # Heavy-model initialisation & helpers
-    # ────────────────────────────────────────────────────────────────────────
-
-    def _init_models(self) -> None:
-        art_path = self.artifacts_path
-        self.keep_images = (
-            self.pipeline_options.generate_page_images
-            or self.pipeline_options.generate_picture_images
-            or self.pipeline_options.generate_table_images
-        )
-        self.preprocessing_model = PagePreprocessingModel(
-            options=PagePreprocessingOptions(
-                images_scale=self.pipeline_options.images_scale
-            )
-        )
-        self.ocr_model = self._make_ocr_model(art_path)
-        self.layout_model = LayoutModel(
-            artifacts_path=art_path,
-            accelerator_options=self.pipeline_options.accelerator_options,
-            options=self.pipeline_options.layout_options,
-        )
-        self.table_model = TableStructureModel(
-            enabled=self.pipeline_options.do_table_structure,
-            artifacts_path=art_path,
-            options=self.pipeline_options.table_structure_options,
-            accelerator_options=self.pipeline_options.accelerator_options,
-        )
-        self.assemble_model = PageAssembleModel(options=PageAssembleOptions())
-        self.reading_order_model = ReadingOrderModel(options=ReadingOrderOptions())
-
-        # --- optional enrichment ------------------------------------------------
-        self.enrichment_pipe = [
-            # Code Formula Enrichment Model
-            CodeFormulaModel(
-                enabled=self.pipeline_options.do_code_enrichment
-                or self.pipeline_options.do_formula_enrichment,
-                artifacts_path=self.artifacts_path,
-                options=CodeFormulaModelOptions(
-                    do_code_enrichment=self.pipeline_options.do_code_enrichment,
-                    do_formula_enrichment=self.pipeline_options.do_formula_enrichment,
-                ),
-                accelerator_options=self.pipeline_options.accelerator_options,
-            ),
-            *self.enrichment_pipe,
-        ]
-
-        self.keep_backend = any(
-            (
-                self.pipeline_options.do_formula_enrichment,
-                self.pipeline_options.do_code_enrichment,
-                self.pipeline_options.do_picture_classification,
-                self.pipeline_options.do_picture_description,
-            )
-        )
-
-    # ---------------------------------------------------------------- helpers
-    def _make_ocr_model(self, art_path: Optional[Path]) -> Any:
-        factory = get_ocr_factory(
-            allow_external_plugins=self.pipeline_options.allow_external_plugins
-        )
-        return factory.create_instance(
-            options=self.pipeline_options.ocr_options,
-            enabled=self.pipeline_options.do_ocr,
-            artifacts_path=art_path,
-            accelerator_options=self.pipeline_options.accelerator_options,
-        )
-
-    # ────────────────────────────────────────────────────────────────────────
-    # Build - thread pipeline
-    # ────────────────────────────────────────────────────────────────────────
-
-    def _create_run_ctx(self) -> RunContext:
-        opts = self.pipeline_options
-        preprocess = ThreadedPipelineStage(
-            name="preprocess",
-            model=self.preprocessing_model,
-            batch_size=1,
-            batch_timeout=opts.batch_timeout_seconds,
-            queue_max_size=opts.queue_max_size,
-        )
-        ocr = ThreadedPipelineStage(
-            name="ocr",
-            model=self.ocr_model,
-            batch_size=opts.ocr_batch_size,
-            batch_timeout=opts.batch_timeout_seconds,
-            queue_max_size=opts.queue_max_size,
-        )
-        layout = ThreadedPipelineStage(
-            name="layout",
-            model=self.layout_model,
-            batch_size=opts.layout_batch_size,
-            batch_timeout=opts.batch_timeout_seconds,
-            queue_max_size=opts.queue_max_size,
-        )
-        table = ThreadedPipelineStage(
-            name="table",
-            model=self.table_model,
-            batch_size=opts.table_batch_size,
-            batch_timeout=opts.batch_timeout_seconds,
-            queue_max_size=opts.queue_max_size,
-        )
-        assemble = ThreadedPipelineStage(
-            name="assemble",
-            model=self.assemble_model,
-            batch_size=1,
-            batch_timeout=opts.batch_timeout_seconds,
-            queue_max_size=opts.queue_max_size,
-        )
-
-        # wire stages
-        output_q = ThreadedQueue(opts.queue_max_size)
-        preprocess.add_output_queue(ocr.input_queue)
-        ocr.add_output_queue(layout.input_queue)
-        layout.add_output_queue(table.input_queue)
-        table.add_output_queue(assemble.input_queue)
-        assemble.add_output_queue(output_q)
-
-        stages = [preprocess, ocr, layout, table, assemble]
-        return RunContext(stages=stages, first_stage=preprocess, output_queue=output_q)
-
-    # --------------------------------------------------------------------- build
-    def _build_document(self, conv_res: ConversionResult) -> ConversionResult:
-        """Stream-build the document while interleaving producer and consumer work."""
-        run_id = next(self._run_seq)
-        assert isinstance(conv_res.input._backend, PdfDocumentBackend)
-        backend = conv_res.input._backend
-
-        # preload & initialise pages -------------------------------------------------------------
-        start_page, end_page = conv_res.input.limits.page_range
-        pages: list[Page] = []
-        for i in range(conv_res.input.page_count):
-            if start_page - 1 <= i <= end_page - 1:
-                page = Page(page_no=i)
-                page._backend = backend.load_page(i)
-                if page._backend and page._backend.is_valid():
-                    page.size = page._backend.get_size()
-                    conv_res.pages.append(page)
-                    pages.append(page)
-
-        if not pages:
-            conv_res.status = ConversionStatus.FAILURE
-            return conv_res
-
-        total_pages: int = len(pages)
-        ctx: RunContext = self._create_run_ctx()
-        for st in ctx.stages:
-            st.start()
-
-        proc = ProcessingResult(total_expected=total_pages)
-        fed_idx: int = 0  # number of pages successfully queued
-        batch_size: int = 32  # drain chunk
-        try:
-            while proc.success_count + proc.failure_count < total_pages:
-                # 1) feed - try to enqueue until the first queue is full
-                while fed_idx < total_pages:
-                    ok = ctx.first_stage.input_queue.put(
-                        ThreadedItem(
-                            payload=pages[fed_idx],
-                            run_id=run_id,
-                            page_no=pages[fed_idx].page_no,
-                            conv_res=conv_res,
-                        ),
-                        timeout=0.0,  # non-blocking try-put
-                    )
-                    if ok:
-                        fed_idx += 1
-                        if fed_idx == total_pages:
-                            ctx.first_stage.input_queue.close()
-                    else:  # queue full - switch to draining
-                        break
-
-                # 2) drain - pull whatever is ready from the output side
-                out_batch = ctx.output_queue.get_batch(batch_size, timeout=0.05)
-                for itm in out_batch:
-                    if itm.run_id != run_id:
-                        continue
-                    if itm.is_failed or itm.error:
-                        proc.failed_pages.append(
-                            (itm.page_no, itm.error or RuntimeError("unknown error"))
-                        )
-                    else:
-                        assert itm.payload is not None
-                        proc.pages.append(itm.payload)
-
-                # 3) failure safety - downstream closed early -> mark missing pages failed
-                if not out_batch and ctx.output_queue.closed:
-                    missing = total_pages - (proc.success_count + proc.failure_count)
-                    if missing > 0:
-                        proc.failed_pages.extend(
-                            [(-1, RuntimeError("pipeline terminated early"))] * missing
-                        )
-                    break
-        finally:
-            for st in ctx.stages:
-                st.stop()
-            ctx.output_queue.close()
-
-        self._integrate_results(conv_res, proc)
-        return conv_res
-
-    # ---------------------------------------------------- integrate_results()
-    def _integrate_results(
-        self, conv_res: ConversionResult, proc: ProcessingResult
-    ) -> None:
-        page_map = {p.page_no: p for p in proc.pages}
-        conv_res.pages = [
-            page_map.get(p.page_no, p)
-            for p in conv_res.pages
-            if p.page_no in page_map
-            or not any(fp == p.page_no for fp, _ in proc.failed_pages)
-        ]
-        if proc.is_complete_failure:
-            conv_res.status = ConversionStatus.FAILURE
-        elif proc.is_partial_success:
-            conv_res.status = ConversionStatus.PARTIAL_SUCCESS
-        else:
-            conv_res.status = ConversionStatus.SUCCESS
-        if not self.keep_images:
-            for p in conv_res.pages:
-                p._image_cache = {}
-        for p in conv_res.pages:
-            if not self.keep_backend and p._backend is not None:
-                p._backend.unload()
-            if not self.pipeline_options.generate_parsed_pages:
-                del p.parsed_page
-                p.parsed_page = None
-
-    # ---------------------------------------------------------------- assemble
-    def _assemble_document(self, conv_res: ConversionResult) -> ConversionResult:
-        elements, headers, body = [], [], []
-        with TimeRecorder(conv_res, "doc_assemble", scope=ProfilingScope.DOCUMENT):
-            for p in conv_res.pages:
-                if p.assembled:
-                    elements.extend(p.assembled.elements)
-                    headers.extend(p.assembled.headers)
-                    body.extend(p.assembled.body)
-            conv_res.assembled = AssembledUnit(
-                elements=elements, headers=headers, body=body
-            )
-            conv_res.document = self.reading_order_model(conv_res)
-
-            # Generate page images in the output
-            if self.pipeline_options.generate_page_images:
-                for page in conv_res.pages:
-                    assert page.image is not None
-                    page_no = page.page_no + 1
-                    conv_res.document.pages[page_no].image = ImageRef.from_pil(
-                        page.image, dpi=int(72 * self.pipeline_options.images_scale)
-                    )
-
-            # Generate images of the requested element types
-            with warnings.catch_warnings():  # deprecated generate_table_images
-                warnings.filterwarnings("ignore", category=DeprecationWarning)
-                if (
-                    self.pipeline_options.generate_picture_images
-                    or self.pipeline_options.generate_table_images
-                ):
-                    scale = self.pipeline_options.images_scale
-                    for element, _level in conv_res.document.iterate_items():
-                        if not isinstance(element, DocItem) or len(element.prov) == 0:
-                            continue
-                        if (
-                            isinstance(element, PictureItem)
-                            and self.pipeline_options.generate_picture_images
-                        ) or (
-                            isinstance(element, TableItem)
-                            and self.pipeline_options.generate_table_images
-                        ):
-                            page_ix = element.prov[0].page_no - 1
-                            page = next(
-                                (p for p in conv_res.pages if p.page_no == page_ix),
-                                cast("Page", None),
-                            )
-                            assert page is not None
-                            assert page.size is not None
-                            assert page.image is not None
-
-                            crop_bbox = (
-                                element.prov[0]
-                                .bbox.scaled(scale=scale)
-                                .to_top_left_origin(
-                                    page_height=page.size.height * scale
-                                )
-                            )
-
-                            cropped_im = page.image.crop(crop_bbox.as_tuple())
-                            element.image = ImageRef.from_pil(
-                                cropped_im, dpi=int(72 * scale)
-                            )
-
-            # Aggregate confidence values for document:
-            if len(conv_res.pages) > 0:
-                with warnings.catch_warnings():
-                    warnings.filterwarnings(
-                        "ignore",
-                        category=RuntimeWarning,
-                        message="Mean of empty slice|All-NaN slice encountered",
-                    )
-                    conv_res.confidence.layout_score = float(
-                        np.nanmean(
-                            [c.layout_score for c in conv_res.confidence.pages.values()]
-                        )
-                    )
-                    conv_res.confidence.parse_score = float(
-                        np.nanquantile(
-                            [c.parse_score for c in conv_res.confidence.pages.values()],
-                            q=0.1,  # parse score should relate to worst 10% of pages.
-                        )
-                    )
-                    conv_res.confidence.table_score = float(
-                        np.nanmean(
-                            [c.table_score for c in conv_res.confidence.pages.values()]
-                        )
-                    )
-                    conv_res.confidence.ocr_score = float(
-                        np.nanmean(
-                            [c.ocr_score for c in conv_res.confidence.pages.values()]
-                        )
-                    )
-
-        return conv_res
-
-    # ---------------------------------------------------------------- misc
-    @classmethod
-    def get_default_options(cls) -> ThreadedPdfPipelineOptions:
-        return ThreadedPdfPipelineOptions()
-
-    @classmethod
-    def is_backend_supported(cls, backend: AbstractDocumentBackend) -> bool:
-        return isinstance(backend, PdfDocumentBackend)
-
-    def _determine_status(self, conv_res: ConversionResult) -> ConversionStatus:
-        return conv_res.status
-
-    def _unload(self, conv_res: ConversionResult) -> None:
-        for p in conv_res.pages:
-            if p._backend is not None:
-                p._backend.unload()
-        if conv_res.input._backend:
-            conv_res.input._backend.unload()
+class ThreadedStandardPdfPipeline(StandardPdfPipeline):
+    """Backwards compatible import for ThreadedStandardPdfPipeline."""

{docling-2.59.0.dist-info → docling-2.60.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: docling
-Version: 2.59.0
+Version: 2.60.0
 Summary: SDK and CLI for parsing PDF, DOCX, HTML, and more, to a unified document representation for powering downstream workflows such as gen AI applications.
 Author-email: Christoph Auer <cau@zurich.ibm.com>, Michele Dolfi <dol@zurich.ibm.com>, Maxim Lysak <mly@zurich.ibm.com>, Nikos Livathinos <nli@zurich.ibm.com>, Ahmed Nassar <ahn@zurich.ibm.com>, Panos Vagenas <pva@zurich.ibm.com>, Peter Staar <taa@zurich.ibm.com>
 License-Expression: MIT