docling-ibm-models 3.1.2__py3-none-any.whl → 3.2.0__py3-none-any.whl

docling_ibm_models/code_formula_model/code_formula_predictor.py

@@ -0,0 +1,223 @@
+#
+# Copyright IBM Corp. 2024 - 2024
+# SPDX-License-Identifier: MIT
+#
+import logging
+from typing import List, Union
+
+import numpy as np
+import torch
+from PIL import Image
+from transformers import AutoTokenizer
+
+from docling_ibm_models.code_formula_model.models.sam_opt import SamOPTForCausalLM
+from docling_ibm_models.code_formula_model.models.sam_opt_image_processor import (
+    SamOptImageProcessor,
+)
+
+_log = logging.getLogger(__name__)
+
+
+class CodeFormulaPredictor:
+    """
+    Code and Formula Predictor using a multi-modal vision-language model.
+
+    This class enables the prediction of code or LaTeX representations
+    from input images of code snippets or mathematical formulas.
+
+    Attributes
+    ----------
+    _device : str
+        The device on which the model is loaded (e.g., 'cpu' or 'cuda').
+    _num_threads : int
+        Number of threads used for inference when running on CPU.
+    _tokenizer : transformers.PreTrainedTokenizer
+        Tokenizer for processing textual inputs to the model.
+    _model : transformers.PreTrainedModel
+        Pretrained multi-modal vision-language model.
+    _image_processor : transformers.ImageProcessor
+        Processor for normalizing and preparing input images.
+    _temperature : float
+        Sampling temperature for generation; controls randomness in predictions.
+    """
+
+    def __init__(
+        self,
+        artifacts_path: str,
+        device: str = "cpu",
+        num_threads: int = 4,
+    ):
+        """
+        Initializes the CodeFormulaPredictor with the specified model artifacts.
+
+        Parameters
+        ----------
+        artifacts_path : str
+            Path to the directory containing the pretrained model files.
+        device : str, optional
+            Device to run the inference on ('cpu' or 'cuda'), by default "cpu".
+        num_threads : int, optional
+            Number of threads for CPU inference, by default 4.
+        """
+        self._device = device
+        self._num_threads = num_threads
+        if device == "cpu":
+            torch.set_num_threads(self._num_threads)
+
+        self._tokenizer = AutoTokenizer.from_pretrained(
+            artifacts_path, use_fast=True, padding_side="left"
+        )
+        self._model = SamOPTForCausalLM.from_pretrained(artifacts_path).to(self._device)
+        self._model.eval()
+
+        self._image_processor = SamOptImageProcessor.from_pretrained(artifacts_path)
+
+        _log.debug("CodeFormulaModel settings: {}".format(self.info()))
+
+    def info(self) -> dict:
+        """
+        Retrieves configuration details of the CodeFormulaPredictor instance.
+
+        Returns
+        -------
+        dict
+            A dictionary containing configuration details such as the device and
+            the number of threads used.
+        """
+        info = {
+            "device": self._device,
+            "num_threads": self._num_threads,
+        }
+        return info
+
+    def _get_prompt(self, label: str) -> str:
+        """
+        Constructs the prompt for the model based on the input label.
+
+        Parameters
+        ----------
+        label : str
+            The type of input, either 'code' or 'formula'.
+
+        Returns
+        -------
+        str
+            The constructed prompt including necessary tokens and query.
+
+        Raises
+        ------
+        NotImplementedError
+            If the label is not 'code' or 'formula'.
+        """
+        if label == "code":
+            query = "<code_image_to_text>"
+        elif label == "formula":
+            query = "<equation>"
+        else:
+            raise NotImplementedError("Label must be either code or formula")
+
+        prompt = (
+            "A chat between a curious user and an artificial intelligence"
+            " assistant. The assistant gives helpful, detailed, and polite answers to"
+            " the user's questions. USER:"
+        )
+        prompt += (
+            "<img>" + "<imgpad>" * 256 + "</img>" + "\n" + " ASSISTANT:" + "\n" + query
+        )
+
+        return prompt
+
+    @torch.inference_mode()
+    def predict(
+        self,
+        images: List[Union[Image.Image, np.ndarray]],
+        labels: List[str],
+        temperature: float = 0.1,
+    ) -> List[str]:
+        """
+        Predicts the textual representation of input images (code or LaTeX).
+
+        Parameters
+        ----------
+        images : List[Union[Image.Image, np.ndarray]]
+            List of images to be processed, provided as PIL Image objects or numpy arrays.
+        labels : List[str]
+            List of labels indicating the type of each image ('code' or 'formula').
+        temperature : float, optional
+            Sampling temperature for generation, by default set to 0.1.
+
+        Returns
+        -------
+        List[str]
+            List of predicted textual outputs for each input image in the given input
+            order.
+
+        Raises
+        ------
+        TypeError
+            If any of the input images is not of a supported type (PIL Image or numpy array).
+        Excpetion
+            In case the temperature is an invalid number.
+        """
+        if (type(temperature) != float and type(temperature) != int) or temperature < 0:
+            raise Exception("Temperature must be a number greater or equal to 0.")
+
+        do_sample = True
+        if temperature == 0:
+            do_sample = False
+            temperature = None
+
+        if len(labels) != len(images):
+            raise Exception(
+                "The number of images must be the same as the number of labels."
+            )
+
+        images_tmp = []
+        for image in images:
+            if isinstance(image, Image.Image):
+                image = image.convert("RGB")
+            elif isinstance(image, np.ndarray):
+                image = Image.fromarray(image).convert("RGB")
+            else:
+                raise TypeError("Not supported input image format")
+            images_tmp.append(image)
+        images = images_tmp
+
+        images_tensor = torch.stack([self._image_processor(img) for img in images]).to(
+            self._device
+        )
+
+        prompts = [self._get_prompt(label) for label in labels]
+
+        tokenized = self._tokenizer(prompts, padding=True, return_tensors="pt")
+        tokenized = {k: v.to(self._device) for k, v in tokenized.items()}
+
+        prompt_ids = tokenized["input_ids"]
+        attention_mask = tokenized["attention_mask"]
+
+        if self._device == "cpu":
+            output_ids_list = self._model.generate(
+                input_ids=prompt_ids,
+                attention_mask=attention_mask,
+                images=images_tensor,
+                do_sample=do_sample,
+                temperature=temperature,
+                max_new_tokens=4096 - prompt_ids.shape[1],
+                use_cache=True,
+            )
+        else:
+            with torch.autocast(device_type=self._device, dtype=torch.bfloat16):
+                output_ids_list = self._model.generate(
+                    prompt_ids,
+                    images=images_tensor,
+                    do_sample=do_sample,
+                    temperature=temperature,
+                    max_new_tokens=4096 - prompt_ids.shape[1],
+                    use_cache=True,
+                )
+
+        outputs = self._tokenizer.batch_decode(
+            output_ids_list[:, prompt_ids.shape[1] :], skip_special_tokens=True
+        )
+
+        return outputs

docling_ibm_models/code_formula_model/models/sam.py

@@ -0,0 +1,514 @@
+# Copyright (c) Meta Platforms, Inc. and affiliates.
+# All rights reserved.
+#
+# This file was originally developed by Meta Platforms, Inc. as part of
+# the Segment Anything project (https://github.com/facebookresearch/segment-anything).
+# It has been adapted by contributors from the Vary-toy project
+# (https://github.com/Ucas-HaoranWei/Vary-toy).
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at:
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
+from functools import partial
+from typing import Optional, Tuple, Type
+
+import torch
+import torch.nn as nn
+import torch.nn.functional as F
+
+
+class MLPBlock(nn.Module):
+    def __init__(
+        self,
+        embedding_dim: int,
+        mlp_dim: int,
+        act: Type[nn.Module] = nn.GELU,
+    ) -> None:
+        super().__init__()
+        self.lin1 = nn.Linear(embedding_dim, mlp_dim)
+        self.lin2 = nn.Linear(mlp_dim, embedding_dim)
+        self.act = act()
+
+    def forward(self, x: torch.Tensor) -> torch.Tensor:
+        return self.lin2(self.act(self.lin1(x)))
+
+
+# From https://github.com/facebookresearch/detectron2/blob/main/detectron2/layers/batch_norm.py # noqa
+# Itself from https://github.com/facebookresearch/ConvNeXt/blob/d1fa8f6fef0a165b27399986cc2bdacc92777e40/models/convnext.py#L119  # noqa
+class LayerNorm2d(nn.Module):
+    def __init__(self, num_channels: int, eps: float = 1e-6) -> None:
+        super().__init__()
+        self.weight = nn.Parameter(torch.ones(num_channels))
+        self.bias = nn.Parameter(torch.zeros(num_channels))
+        self.eps = eps
+
+    def forward(self, x: torch.Tensor) -> torch.Tensor:
+        u = x.mean(1, keepdim=True)
+        s = (x - u).pow(2).mean(1, keepdim=True)
+        x = (x - u) / torch.sqrt(s + self.eps)
+        x = self.weight[:, None, None] * x + self.bias[:, None, None]
+        return x
+
+
+# This class and its supporting functions below lightly adapted from the ViTDet backbone available at: https://github.com/facebookresearch/detectron2/blob/main/detectron2/modeling/backbone/vit.py # noqa
+class ImageEncoderViT(nn.Module):
+    def __init__(
+        self,
+        img_size: int = 1024,
+        patch_size: int = 16,
+        in_chans: int = 3,
+        embed_dim: int = 768,
+        depth: int = 12,
+        num_heads: int = 12,
+        mlp_ratio: float = 4.0,
+        out_chans: int = 256,
+        qkv_bias: bool = True,
+        norm_layer: Type[nn.Module] = nn.LayerNorm,
+        act_layer: Type[nn.Module] = nn.GELU,
+        use_abs_pos: bool = True,
+        use_rel_pos: bool = False,
+        rel_pos_zero_init: bool = True,
+        window_size: int = 0,
+        global_attn_indexes: Tuple[int, ...] = (),
+    ) -> None:
+        """
+        Args:
+            img_size (int): Input image size.
+            patch_size (int): Patch size.
+            in_chans (int): Number of input image channels.
+            embed_dim (int): Patch embedding dimension.
+            depth (int): Depth of ViT.
+            num_heads (int): Number of attention heads in each ViT block.
+            mlp_ratio (float): Ratio of mlp hidden dim to embedding dim.
+            qkv_bias (bool): If True, add a learnable bias to query, key, value.
+            norm_layer (nn.Module): Normalization layer.
+            act_layer (nn.Module): Activation layer.
+            use_abs_pos (bool): If True, use absolute positional embeddings.
+            use_rel_pos (bool): If True, add relative positional embeddings to the attention map.
+            rel_pos_zero_init (bool): If True, zero initialize relative positional parameters.
+            window_size (int): Window size for window attention blocks.
+            global_attn_indexes (list): Indexes for blocks using global attention.
+        """
+        super().__init__()
+        self.img_size = img_size
+
+        self.patch_embed = PatchEmbed(
+            kernel_size=(patch_size, patch_size),
+            stride=(patch_size, patch_size),
+            in_chans=in_chans,
+            embed_dim=embed_dim,
+        )
+
+        self.pos_embed: Optional[nn.Parameter] = None
+        if use_abs_pos:
+            self.pos_embed = nn.Parameter(
+                torch.zeros(
+                    1, img_size // patch_size, img_size // patch_size, embed_dim
+                )
+            )
+
+        self.blocks = nn.ModuleList()
+        for i in range(depth):
+            block = Block(
+                dim=embed_dim,
+                num_heads=num_heads,
+                mlp_ratio=mlp_ratio,
+                qkv_bias=qkv_bias,
+                norm_layer=norm_layer,
+                act_layer=act_layer,
+                use_rel_pos=use_rel_pos,
+                rel_pos_zero_init=rel_pos_zero_init,
+                window_size=window_size if i not in global_attn_indexes else 0,
+                input_size=(img_size // patch_size, img_size // patch_size),
+            )
+            self.blocks.append(block)
+
+        self.neck = nn.Sequential(
+            nn.Conv2d(
+                embed_dim,
+                out_chans,
+                kernel_size=1,
+                bias=False,
+            ),
+            LayerNorm2d(out_chans),
+            nn.Conv2d(
+                out_chans,
+                out_chans,
+                kernel_size=3,
+                padding=1,
+                bias=False,
+            ),
+            LayerNorm2d(out_chans),
+        )
+
+        self.net_2 = nn.Conv2d(256, 512, kernel_size=3, stride=2, padding=1, bias=False)
+        self.net_3 = nn.Conv2d(
+            512, 1024, kernel_size=3, stride=2, padding=1, bias=False
+        )
+
+    def forward(self, x: torch.Tensor) -> torch.Tensor:
+        x = self.patch_embed(x)
+        if self.pos_embed is not None:
+            x = x + self.pos_embed
+
+        for blk in self.blocks:
+            x = blk(x)
+
+        x = self.neck(x.permute(0, 3, 1, 2))
+        x = self.net_2(x)
+        x = self.net_3(x)
+
+        return x
+
+
+class Block(nn.Module):
+    """Transformer blocks with support of window attention and residual propagation blocks"""
+
+    def __init__(
+        self,
+        dim: int,
+        num_heads: int,
+        mlp_ratio: float = 4.0,
+        qkv_bias: bool = True,
+        norm_layer: Type[nn.Module] = nn.LayerNorm,
+        act_layer: Type[nn.Module] = nn.GELU,
+        use_rel_pos: bool = False,
+        rel_pos_zero_init: bool = True,
+        window_size: int = 0,
+        input_size: Optional[Tuple[int, int]] = None,
+    ) -> None:
+        """
+        Args:
+            dim (int): Number of input channels.
+            num_heads (int): Number of attention heads in each ViT block.
+            mlp_ratio (float): Ratio of mlp hidden dim to embedding dim.
+            qkv_bias (bool): If True, add a learnable bias to query, key, value.
+            norm_layer (nn.Module): Normalization layer.
+            act_layer (nn.Module): Activation layer.
+            use_rel_pos (bool): If True, add relative positional embeddings to the attention map.
+            rel_pos_zero_init (bool): If True, zero initialize relative positional parameters.
+            window_size (int): Window size for window attention blocks. If it equals 0, then
+                use global attention.
+            input_size (tuple(int, int) or None): Input resolution for calculating the relative
+                positional parameter size.
+        """
+        super().__init__()
+        self.norm1 = norm_layer(dim)
+        self.attn = Attention(
+            dim,
+            num_heads=num_heads,
+            qkv_bias=qkv_bias,
+            use_rel_pos=use_rel_pos,
+            rel_pos_zero_init=rel_pos_zero_init,
+            input_size=input_size if window_size == 0 else (window_size, window_size),
+        )
+
+        self.norm2 = norm_layer(dim)
+        self.mlp = MLPBlock(
+            embedding_dim=dim, mlp_dim=int(dim * mlp_ratio), act=act_layer
+        )
+
+        self.window_size = window_size
+
+    def forward(self, x: torch.Tensor) -> torch.Tensor:
+        shortcut = x
+        x = self.norm1(x)
+        if self.window_size > 0:
+            H, W = x.shape[1], x.shape[2]
+            x, pad_hw = window_partition(x, self.window_size)
+
+        x = self.attn(x)
+        if self.window_size > 0:
+            x = window_unpartition(x, self.window_size, pad_hw, (H, W))
+
+        x = shortcut + x
+        x = x + self.mlp(self.norm2(x))
+
+        return x
+
+
+class Attention(nn.Module):
+    """Multi-head Attention block with relative position embeddings."""
+
+    def __init__(
+        self,
+        dim: int,
+        num_heads: int = 8,
+        qkv_bias: bool = True,
+        use_rel_pos: bool = False,
+        rel_pos_zero_init: bool = True,
+        input_size: Optional[Tuple[int, int]] = None,
+    ) -> None:
+        """
+        Args:
+            dim (int): Number of input channels.
+            num_heads (int): Number of attention heads.
+            qkv_bias (bool):  If True, add a learnable bias to query, key, value.
+            rel_pos (bool): If True, add relative positional embeddings to the attention map.
+            rel_pos_zero_init (bool): If True, zero initialize relative positional parameters.
+            input_size (tuple(int, int) or None): Input resolution for calculating the relative
+                positional parameter size.
+        """
+        super().__init__()
+        self.num_heads = num_heads
+        head_dim = dim // num_heads
+        self.scale = head_dim**-0.5
+
+        self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
+        self.proj = nn.Linear(dim, dim)
+
+        self.use_rel_pos = use_rel_pos
+        if self.use_rel_pos:
+            assert (
+                input_size is not None
+            ), "Input size must be provided if using relative positional encoding."
+            # initialize relative positional embeddings
+            self.rel_pos_h = nn.Parameter(torch.zeros(2 * input_size[0] - 1, head_dim))
+            self.rel_pos_w = nn.Parameter(torch.zeros(2 * input_size[1] - 1, head_dim))
+
+    def forward(self, x: torch.Tensor) -> torch.Tensor:
+        B, H, W, _ = x.shape
+        # qkv with shape (3, B, nHead, H * W, C)
+        qkv = (
+            self.qkv(x).reshape(B, H * W, 3, self.num_heads, -1).permute(2, 0, 3, 1, 4)
+        )
+        # q, k, v with shape (B * nHead, H * W, C)
+        q, k, v = qkv.reshape(3, B * self.num_heads, H * W, -1).unbind(0)
+
+        attn = (q * self.scale) @ k.transpose(-2, -1)
+
+        if self.use_rel_pos:
+            attn = add_decomposed_rel_pos(
+                attn, q, self.rel_pos_h, self.rel_pos_w, (H, W), (H, W)
+            )
+
+        attn = attn.softmax(dim=-1)
+        x = (
+            (attn @ v)
+            .view(B, self.num_heads, H, W, -1)
+            .permute(0, 2, 3, 1, 4)
+            .reshape(B, H, W, -1)
+        )
+        x = self.proj(x)
+
+        return x
+
+
+def window_partition(
+    x: torch.Tensor, window_size: int
+) -> Tuple[torch.Tensor, Tuple[int, int]]:
+    """
+    Partition into non-overlapping windows with padding if needed.
+    Args:
+        x (tensor): input tokens with [B, H, W, C].
+        window_size (int): window size.
+
+    Returns:
+        windows: windows after partition with [B * num_windows, window_size, window_size, C].
+        (Hp, Wp): padded height and width before partition
+    """
+    B, H, W, C = x.shape
+
+    pad_h = (window_size - H % window_size) % window_size
+    pad_w = (window_size - W % window_size) % window_size
+    if pad_h > 0 or pad_w > 0:
+        x = F.pad(x, (0, 0, 0, pad_w, 0, pad_h))
+    Hp, Wp = H + pad_h, W + pad_w
+
+    x = x.view(B, Hp // window_size, window_size, Wp // window_size, window_size, C)
+    windows = (
+        x.permute(0, 1, 3, 2, 4, 5).contiguous().view(-1, window_size, window_size, C)
+    )
+    return windows, (Hp, Wp)
+
+
+def window_unpartition(
+    windows: torch.Tensor,
+    window_size: int,
+    pad_hw: Tuple[int, int],
+    hw: Tuple[int, int],
+) -> torch.Tensor:
+    """
+    Window unpartition into original sequences and removing padding.
+    Args:
+        windows (tensor): input tokens with [B * num_windows, window_size, window_size, C].
+        window_size (int): window size.
+        pad_hw (Tuple): padded height and width (Hp, Wp).
+        hw (Tuple): original height and width (H, W) before padding.
+
+    Returns:
+        x: unpartitioned sequences with [B, H, W, C].
+    """
+    Hp, Wp = pad_hw
+    H, W = hw
+    B = windows.shape[0] // (Hp * Wp // window_size // window_size)
+    x = windows.view(
+        B, Hp // window_size, Wp // window_size, window_size, window_size, -1
+    )
+    x = x.permute(0, 1, 3, 2, 4, 5).contiguous().view(B, Hp, Wp, -1)
+
+    if Hp > H or Wp > W:
+        x = x[:, :H, :W, :].contiguous()
+    return x
+
+
+def get_rel_pos(q_size: int, k_size: int, rel_pos: torch.Tensor) -> torch.Tensor:
+    """
+    Get relative positional embeddings according to the relative positions of
+        query and key sizes.
+    Args:
+        q_size (int): size of query q.
+        k_size (int): size of key k.
+        rel_pos (Tensor): relative position embeddings (L, C).
+
+    Returns:
+        Extracted positional embeddings according to relative positions.
+    """
+    max_rel_dist = int(2 * max(q_size, k_size) - 1)
+    # Interpolate rel pos if needed.
+    if rel_pos.shape[0] != max_rel_dist:
+        # Interpolate rel pos.
+        rel_pos_resized = F.interpolate(
+            rel_pos.reshape(1, rel_pos.shape[0], -1).permute(0, 2, 1),
+            size=max_rel_dist,
+            mode="linear",
+        )
+        rel_pos_resized = rel_pos_resized.reshape(-1, max_rel_dist).permute(1, 0)
+    else:
+        rel_pos_resized = rel_pos
+
+    # Scale the coords with short length if shapes for q and k are different.
+    q_coords = torch.arange(q_size)[:, None] * max(k_size / q_size, 1.0)
+    k_coords = torch.arange(k_size)[None, :] * max(q_size / k_size, 1.0)
+    relative_coords = (q_coords - k_coords) + (k_size - 1) * max(q_size / k_size, 1.0)
+
+    return rel_pos_resized[relative_coords.long()]
+
+
+def add_decomposed_rel_pos(
+    attn: torch.Tensor,
+    q: torch.Tensor,
+    rel_pos_h: torch.Tensor,
+    rel_pos_w: torch.Tensor,
+    q_size: Tuple[int, int],
+    k_size: Tuple[int, int],
+) -> torch.Tensor:
+    """
+    Calculate decomposed Relative Positional Embeddings from :paper:`mvitv2`.
+    https://github.com/facebookresearch/mvit/blob/19786631e330df9f3622e5402b4a419a263a2c80/mvit/models/attention.py   # noqa B950
+    Args:
+        attn (Tensor): attention map.
+        q (Tensor): query q in the attention layer with shape (B, q_h * q_w, C).
+        rel_pos_h (Tensor): relative position embeddings (Lh, C) for height axis.
+        rel_pos_w (Tensor): relative position embeddings (Lw, C) for width axis.
+        q_size (Tuple): spatial sequence size of query q with (q_h, q_w).
+        k_size (Tuple): spatial sequence size of key k with (k_h, k_w).
+
+    Returns:
+        attn (Tensor): attention map with added relative positional embeddings.
+    """
+    q_h, q_w = q_size
+    k_h, k_w = k_size
+    Rh = get_rel_pos(q_h, k_h, rel_pos_h)
+    Rw = get_rel_pos(q_w, k_w, rel_pos_w)
+
+    B, _, dim = q.shape
+    r_q = q.reshape(B, q_h, q_w, dim)
+    rel_h = torch.einsum("bhwc,hkc->bhwk", r_q, Rh)
+    rel_w = torch.einsum("bhwc,wkc->bhwk", r_q, Rw)
+
+    attn = (
+        attn.view(B, q_h, q_w, k_h, k_w)
+        + rel_h[:, :, :, :, None]
+        + rel_w[:, :, :, None, :]
+    ).view(B, q_h * q_w, k_h * k_w)
+
+    return attn
+
+
+class PatchEmbed(nn.Module):
+    """
+    Image to Patch Embedding.
+    """
+
+    def __init__(
+        self,
+        kernel_size: Tuple[int, int] = (16, 16),
+        stride: Tuple[int, int] = (16, 16),
+        padding: Tuple[int, int] = (0, 0),
+        in_chans: int = 3,
+        embed_dim: int = 768,
+    ) -> None:
+        """
+        Args:
+            kernel_size (Tuple): kernel size of the projection layer.
+            stride (Tuple): stride of the projection layer.
+            padding (Tuple): padding size of the projection layer.
+            in_chans (int): Number of input image channels.
+            embed_dim (int): Patch embedding dimension.
+        """
+        super().__init__()
+
+        self.proj = nn.Conv2d(
+            in_chans, embed_dim, kernel_size=kernel_size, stride=stride, padding=padding
+        )
+
+    def forward(self, x: torch.Tensor) -> torch.Tensor:
+        x = self.proj(x)
+        # B C H W -> B H W C
+        x = x.permute(0, 2, 3, 1)
+        return x
+
+
+def build_sam_vit_b(checkpoint=None, image_size=1024):
+    return _build_sam(
+        encoder_embed_dim=768,
+        encoder_depth=12,
+        encoder_num_heads=12,
+        encoder_global_attn_indexes=[2, 5, 8, 11],
+        checkpoint=checkpoint,
+        image_size=image_size,
+    )
+
+
+def _build_sam(
+    encoder_embed_dim,
+    encoder_depth,
+    encoder_num_heads,
+    encoder_global_attn_indexes,
+    checkpoint=None,
+    image_size=1024,
+):
+    prompt_embed_dim = 256
+    vit_patch_size = 16
+    image_encoder = ImageEncoderViT(
+        depth=encoder_depth,
+        embed_dim=encoder_embed_dim,
+        img_size=image_size,
+        mlp_ratio=4,
+        norm_layer=partial(torch.nn.LayerNorm, eps=1e-6),
+        num_heads=encoder_num_heads,
+        patch_size=vit_patch_size,
+        qkv_bias=True,
+        use_rel_pos=True,
+        global_attn_indexes=encoder_global_attn_indexes,
+        window_size=14,
+        out_chans=prompt_embed_dim,
+    )
+
+    if checkpoint is not None:
+        # with open(checkpoint, "rb") as f:
+        state_dict = torch.load(checkpoint)
+
+        image_encoder.load_state_dict(state_dict, strict=True)
+    return image_encoder

docling_ibm_models/code_formula_model/models/sam_opt.py

@@ -0,0 +1,237 @@
+# Copyright 2023 Haotian Liu
+#
+# This file is part of the Vary project, originally located at:
+# https://github.com/Ucas-HaoranWei/Vary-toy/blob/main/Vary-master/vary/model/vary_opt.py
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
+from typing import List, Optional, Tuple, Union
+
+import torch
+import torch.nn as nn
+from transformers import (
+    AutoConfig,
+    AutoModelForCausalLM,
+    OPTConfig,
+    OPTForCausalLM,
+    OPTModel,
+)
+from transformers.modeling_outputs import (
+    BaseModelOutputWithPast,
+    CausalLMOutputWithPast,
+)
+
+from docling_ibm_models.code_formula_model.models.sam import build_sam_vit_b
+
+
+class SamOptConfig(OPTConfig):
+    model_type = "sam_opt"
+
+    def __init__(
+        self,
+        sam_image_size=1024,
+        sam_mm_projector_in=1024,
+        sam_mm_projector_out=768,
+        **kwargs,
+    ):
+        super().__init__(**kwargs)
+        self.sam_image_size = sam_image_size
+        self.sam_mm_projector_in = sam_mm_projector_in
+        self.sam_mm_projector_out = sam_mm_projector_out
+
+
+class SamOPTModel(OPTModel):
+    config_class = SamOptConfig
+
+    def __init__(self, config: OPTConfig):
+        super(SamOPTModel, self).__init__(config)
+        self.vision_tower = build_sam_vit_b(image_size=config.sam_image_size)
+
+        self.mm_projector = nn.Linear(
+            config.sam_mm_projector_in, config.sam_mm_projector_out
+        )
+
+    def embed_tokens(self, x):
+        return self.get_input_embeddings()(x)
+
+    def forward(
+        self,
+        input_ids: torch.LongTensor = None,
+        attention_mask: Optional[torch.Tensor] = None,
+        past_key_values: Optional[List[torch.FloatTensor]] = None,
+        inputs_embeds: Optional[torch.FloatTensor] = None,
+        use_cache: Optional[bool] = None,
+        output_attentions: Optional[bool] = None,
+        output_hidden_states: Optional[bool] = None,
+        images: torch.FloatTensor = None,
+        return_dict: Optional[bool] = None,
+    ) -> Union[Tuple, BaseModelOutputWithPast]:
+
+        if inputs_embeds is None:
+            inputs_embeds = self.embed_tokens(input_ids)
+
+        vision_tower = getattr(self, "vision_tower", None)
+        im_start_token = getattr(self.config, "im_start_token", -1)
+
+        if input_ids.shape[1] != 1 or self.training:
+            with torch.set_grad_enabled(self.training):
+                image_features = vision_tower(images)
+                image_features = image_features.flatten(2).permute(0, 2, 1)
+                image_features = self.mm_projector(image_features)
+
+            new_input_embeds = []
+            for cur_input_ids, cur_input_embeds, cur_image_features in zip(
+                input_ids, inputs_embeds, image_features
+            ):
+                image_start_token_position = torch.where(
+                    cur_input_ids == im_start_token
+                )[0].item()
+
+                cur_image_features = cur_image_features.to(
+                    device=cur_input_embeds.device
+                )
+                num_patches = cur_image_features.shape[0]
+                cur_input_embeds = torch.cat(
+                    (
+                        cur_input_embeds[: image_start_token_position + 1],
+                        cur_image_features,
+                        cur_input_embeds[
+                            image_start_token_position + num_patches + 1 :
+                        ],
+                    ),
+                    dim=0,
+                )
+
+                new_input_embeds.append(cur_input_embeds)
+
+            inputs_embeds = torch.stack(new_input_embeds, dim=0)
+
+        return super(SamOPTModel, self).forward(
+            input_ids=None,
+            attention_mask=attention_mask,
+            past_key_values=past_key_values,
+            inputs_embeds=inputs_embeds,
+            use_cache=use_cache,
+            output_attentions=output_attentions,
+            output_hidden_states=output_hidden_states,
+            return_dict=return_dict,
+        )
+
+
+class SamOPTForCausalLM(OPTForCausalLM):
+    config_class = SamOptConfig
+
+    def __init__(self, config):
+        super(OPTForCausalLM, self).__init__(config)
+        self.model = SamOPTModel(config)
+
+        self.lm_head = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
+
+        self.post_init()
+
+    def get_model(self):
+        return self.model
+
+    def forward(
+        self,
+        input_ids: Optional[torch.LongTensor] = None,
+        past_key_values: Optional[Tuple[Tuple[torch.Tensor]]] = None,
+        attention_mask: Optional[torch.FloatTensor] = None,
+        token_type_ids: Optional[torch.LongTensor] = None,
+        position_ids: Optional[torch.LongTensor] = None,
+        head_mask: Optional[torch.FloatTensor] = None,
+        inputs_embeds: Optional[torch.FloatTensor] = None,
+        encoder_hidden_states: Optional[torch.Tensor] = None,
+        encoder_attention_mask: Optional[torch.FloatTensor] = None,
+        labels: Optional[torch.LongTensor] = None,
+        use_cache: Optional[bool] = None,
+        output_attentions: Optional[bool] = None,
+        output_hidden_states: Optional[bool] = None,
+        images: Optional[torch.FloatTensor] = None,
+        return_dict: Optional[bool] = None,
+    ) -> Union[Tuple, CausalLMOutputWithPast]:
+        output_attentions = (
+            output_attentions
+            if output_attentions is not None
+            else self.config.output_attentions
+        )
+        output_hidden_states = (
+            output_hidden_states
+            if output_hidden_states is not None
+            else self.config.output_hidden_states
+        )
+
+        outputs = self.model(
+            input_ids=input_ids,
+            past_key_values=past_key_values,
+            attention_mask=attention_mask,
+            inputs_embeds=inputs_embeds,
+            use_cache=use_cache,
+            output_attentions=output_attentions,
+            output_hidden_states=output_hidden_states,
+            images=images,
+            return_dict=return_dict,
+        )
+
+        hidden_states = outputs[0]
+        logits = self.lm_head(hidden_states).contiguous()
+
+        return CausalLMOutputWithPast(
+            loss=None,
+            logits=logits,
+            past_key_values=outputs.past_key_values,
+            hidden_states=outputs.hidden_states,
+            attentions=outputs.attentions,
+        )
+
+    def prepare_inputs_for_generation(
+        self, input_ids, past_key_values=None, inputs_embeds=None, **kwargs
+    ):
+        token_type_ids = kwargs.get("token_type_ids", None)
+        if past_key_values:
+            input_ids = input_ids[:, -1].unsqueeze(-1)
+            if token_type_ids is not None:
+                token_type_ids = token_type_ids[:, -1].unsqueeze(-1)
+
+        attention_mask = kwargs.get("attention_mask", None)
+        position_ids = kwargs.get("position_ids", None)
+
+        if attention_mask is not None and position_ids is None:
+            position_ids = attention_mask.long().cumsum(-1) - 1
+            position_ids.masked_fill_(attention_mask == 0, 1)
+            if past_key_values:
+                position_ids = position_ids[:, -1].unsqueeze(-1)
+        else:
+            position_ids = None
+
+        if inputs_embeds is not None and past_key_values is None:
+            model_inputs = {"inputs_embeds": inputs_embeds}
+        else:
+            model_inputs = {"input_ids": input_ids}
+
+        model_inputs.update(
+            {
+                "past_key_values": past_key_values,
+                "use_cache": kwargs.get("use_cache"),
+                "position_ids": position_ids,
+                "attention_mask": attention_mask,
+                "token_type_ids": token_type_ids,
+                "images": kwargs.get("images", None),
+            }
+        )
+        return model_inputs
+
+
+AutoConfig.register("sam_opt", SamOptConfig)
+AutoModelForCausalLM.register(SamOptConfig, SamOPTForCausalLM)

docling_ibm_models/code_formula_model/models/sam_opt_image_processor.py

@@ -0,0 +1,31 @@
+#
+# Copyright IBM Corp. 2024 - 2024
+# SPDX-License-Identifier: MIT
+#
+from PIL import Image
+from torchvision.transforms import functional as F
+from transformers import AutoImageProcessor
+from transformers.image_processing_utils import ImageProcessingMixin
+
+
+class SamOptImageProcessor(ImageProcessingMixin):
+
+    def __init__(self, size=(1024, 1024), mean=None, std=None, **kwargs):
+        super().__init__(**kwargs)
+        self.size = size
+        self.mean = mean
+        self.std = std
+
+    def __call__(self, image):
+        if not isinstance(image, Image.Image):
+            raise ValueError("Input must be a PIL Image")
+
+        image = F.resize(image, self.size)
+        image = F.to_tensor(image)
+
+        image = F.normalize(image, mean=self.mean, std=self.std)
+
+        return image
+
+
+AutoImageProcessor.register(SamOptImageProcessor, SamOptImageProcessor)

{docling_ibm_models-3.1.2.dist-info → docling_ibm_models-3.2.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: docling-ibm-models
-Version: 3.1.2
+Version: 3.2.0
 Summary: This package contains the AI models used by the Docling PDF conversion package
 License: MIT
 Keywords: docling,convert,document,pdf,layout model,segmentation,table structure,table former

{docling_ibm_models-3.1.2.dist-info → docling_ibm_models-3.2.0.dist-info}/RECORD

@@ -1,3 +1,7 @@
+docling_ibm_models/code_formula_model/code_formula_predictor.py,sha256=vU18PzmG77htQFEabS2nKbJqNikbWk_BDaA7sqKQuqc,7358
+docling_ibm_models/code_formula_model/models/sam.py,sha256=6MXf1ae_wRWJ4b1luISWXBRKyoQie7YbpY-qwq1OJJA,17841
+docling_ibm_models/code_formula_model/models/sam_opt.py,sha256=qQjmZZgInmKWBp8qcpYZjR2pr5jzjpYRp404RcsJyZM,8333
+docling_ibm_models/code_formula_model/models/sam_opt_image_processor.py,sha256=rA06J4vCK3s9qgfDreJJCcIYUyJzihBk0kHPskfUPGc,868
 docling_ibm_models/layoutmodel/layout_predictor.py,sha256=ArVgs7FBOiu23TC-JoybcaTp7F7a4BgYC8uRVxTgx4E,5681
 docling_ibm_models/tableformer/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 docling_ibm_models/tableformer/common.py,sha256=2zgGZBFf4fXytEaXrZR2NU6FWdX2kxO0DHlGZmuvpNQ,3230
@@ -22,7 +26,7 @@ docling_ibm_models/tableformer/utils/app_profiler.py,sha256=Pb7o1zcikKXh7ninaNt4
 docling_ibm_models/tableformer/utils/mem_monitor.py,sha256=ycZ07fUBVVKKLTVGF54jGPDM2aTkKuZWk1kMbOS0wwQ,6353
 docling_ibm_models/tableformer/utils/torch_utils.py,sha256=uN0rK9mSXy1ewBnBnILrWebJhhVU4N-XJZBqNiLJwlQ,8893
 docling_ibm_models/tableformer/utils/utils.py,sha256=8Bxf1rEn977lFbY9NX0r5xh9PvxIRipQZX_EZW92XfA,10980
-docling_ibm_models-3.1.2.dist-info/LICENSE,sha256=mBb7ErEcM8VS9OhiGHnQ2kk75HwPhr54W1Oiz3965MY,1088
-docling_ibm_models-3.1.2.dist-info/METADATA,sha256=AamN7IRNfa5y0El3uhHEQsjLMLCdrK51qJTlTrC87XE,7347
-docling_ibm_models-3.1.2.dist-info/WHEEL,sha256=Nq82e9rUAnEjt98J6MlVmMCZb-t9cYE2Ir1kpBmnWfs,88
-docling_ibm_models-3.1.2.dist-info/RECORD,,
+docling_ibm_models-3.2.0.dist-info/LICENSE,sha256=mBb7ErEcM8VS9OhiGHnQ2kk75HwPhr54W1Oiz3965MY,1088
+docling_ibm_models-3.2.0.dist-info/METADATA,sha256=3XWPmwMvKxWm_9mq4_LZV3ffVRN-e_le6WGI2gfOZww,7347
+docling_ibm_models-3.2.0.dist-info/WHEEL,sha256=Nq82e9rUAnEjt98J6MlVmMCZb-t9cYE2Ir1kpBmnWfs,88
+docling_ibm_models-3.2.0.dist-info/RECORD,,