dnastack-client-library 3.1.171__py3-none-any.whl → 3.1.174__py3-none-any.whl

dnastack/cli/commands/workbench/workflows/commands.py

@@ -7,7 +7,7 @@ from click import style, Group
 from dnastack.cli.commands.utils import MAX_RESULTS_ARG, PAGINATION_PAGE_ARG, PAGINATION_PAGE_SIZE_ARG
 from dnastack.cli.commands.workbench.utils import NAMESPACE_ARG, create_sort_arg
 from dnastack.cli.commands.workbench.workflows.utils import get_workflow_client, _get_replace_patch, \
-    _get_description_patch, _get_author_patch
+    _get_description_patch, _get_author_patch, _get_labels_patch
 from dnastack.cli.core.command import formatted_command
 from dnastack.cli.core.command_spec import ArgumentSpec, ArgumentType, CONTEXT_ARG, SINGLE_ENDPOINT_ID_ARG
 from dnastack.cli.helpers.exporter import to_json, normalize
@@ -190,6 +190,11 @@ def init_workflows_commands(group: Group):
                 arg_names=['--organization'],
                 help='Set a organization for the workflow',
             ),
+            ArgumentSpec(
+                name='labels',
+                arg_names=['--labels'],
+                help='Comma-separated list of labels for the workflow (e.g., "tag1,tag2,tag3")',
+            ),
             NAMESPACE_ARG,
             CONTEXT_ARG,
             SINGLE_ENDPOINT_ID_ARG,
@@ -203,7 +208,8 @@ def init_workflows_commands(group: Group):
                         description: FileOrValue,
                         organization: Optional[str],
                         entrypoint: str,
-                        workflow_file: List[FileOrValue]):
+                        workflow_file: List[FileOrValue],
+                        labels: Optional[str]):
         """
         Create a new workflow
 
@@ -232,13 +238,24 @@ def init_workflows_commands(group: Group):
             workflow_files_list = [loader.to_zip()]
             entrypoint = loader.entrypoint
 
+        if labels:
+            # Parse and validate labels, but keep as string for WorkflowCreate
+            parsed_labels = [label.strip() for label in labels.split(',') if label.strip()]
+            if parsed_labels:
+                label_list = ','.join(parsed_labels)
+            else:
+                label_list = None
+        else:
+            label_list = None
+
         create_request = WorkflowCreate(
             name=name,
             version_name=version_name,
             description=description.value() if description else None,
             organization=organization,
             entrypoint=entrypoint,
-            files=workflow_files_list
+            files=workflow_files_list,
+            labels=label_list
         )
 
         result = workflows_client.create_workflow(workflow_create_request=create_request)
@@ -313,7 +330,12 @@ def init_workflows_commands(group: Group):
             ArgumentSpec(
                 name='authors',
                 arg_names=['--authors'],
-                help='List of authors to update. This value can be a comma separated list, a file or JSON literal',
+                help='A list of authors to update. This value can be a comma separated list, a file or JSON literal',
+            ),
+            ArgumentSpec(
+                name='labels',
+                arg_names=['--labels'],
+                help='A list of labels to apply. This value can be a comma separated list, a file or JSON literal',
             ),
             CONTEXT_ARG,
             SINGLE_ENDPOINT_ID_ARG,
@@ -325,7 +347,8 @@ def init_workflows_commands(group: Group):
                         workflow_id: str,
                         name: Optional[str],
                         description: FileOrValue,
-                        authors: Optional[str]):
+                        authors: Optional[str],
+                        labels: Optional[str]):
         """
         Update an existing workflow
 
@@ -337,7 +360,8 @@ def init_workflows_commands(group: Group):
         patch_list = [
             _get_replace_patch("/name", name),
             _get_description_patch(description),
-            _get_author_patch(authors)
+            _get_author_patch(authors),
+            _get_labels_patch(labels)
         ]
         patch_list = [patch for patch in patch_list if patch]
 

dnastack/cli/commands/workbench/workflows/utils.py

@@ -202,6 +202,20 @@ def _get_replace_patch(path: str, value: str) -> Union[JsonPatch, None]:
     return None
 
 
+def _get_labels_patch(labels: Optional[str]) -> Union[JsonPatch, None]:
+    if labels is None:
+        return None
+    if labels.strip() == "":
+        return JsonPatch(path="/labels", op="remove")
+
+    # Clean and validate labels
+    cleaned_labels = [label.strip() for label in labels.split(",") if label.strip()]
+    if not cleaned_labels:
+        return JsonPatch(path="/labels", op="remove")
+
+    return JsonPatch(path="/labels", op="replace", value=cleaned_labels)
+
+
 class JavaScriptFunctionExtractor:
     FUNCTION_PATTERN = re.compile(r'(?:let|const)\s*\w+\s*=\s*(\(.*\)\s*=>\s*\{.*\})', re.DOTALL)
 

dnastack/client/workbench/workflow/client.py

@@ -220,6 +220,7 @@ class WorkflowClient(BaseWorkbenchClient):
                 'organization': (None, workflow_create_request.organization),
                 'description': (None, workflow_create_request.description),
                 'entrypoint': (None, workflow_create_request.entrypoint),
+                'labels': (None, workflow_create_request.labels)
             }
             response = session.post(
                 urljoin(self.endpoint.url, f'{self.namespace}/workflows'),

dnastack/client/workbench/workflow/models.py

@@ -41,6 +41,7 @@ class Workflow(BaseModel):
     versions: Optional[List[WorkflowVersion]]
     deleted: Optional[bool]
     etag: Optional[str]
+    labels: Optional[List[str]]
 
 
 class WorkflowFileType(str, Enum):
@@ -72,6 +73,7 @@ class WorkflowCreate(BaseModel):
     version_name: Optional[str] = None
     entrypoint: str
     files: List[Path]
+    labels: Optional[str] = None
 
 
 class WorkflowVersionCreate(BaseModel):

dnastack/constants.py

@@ -1,5 +1,5 @@
 import os
 
-__version__ = "v3.1.171"
+__version__ = "v3.1.174"
 
 LOCAL_STORAGE_DIRECTORY = os.path.join(os.path.expanduser("~"), '.dnastack')

{dnastack_client_library-3.1.171.dist-info → dnastack_client_library-3.1.174.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: dnastack-client-library
-Version: 3.1.171
+Version: 3.1.174
 Summary: DNAstack's GA4GH library and CLI
 Author-email: DNAstack <devs@dnastack.com>
 License: Apache License, Version 2.0

{dnastack_client_library-3.1.171.dist-info → dnastack_client_library-3.1.174.dist-info}/RECORD

@@ -1,6 +1,6 @@
 dnastack/__init__.py,sha256=mslf7se8vBSK_HkqWTGPdibeVhT4xyKXgzQBV7dEK1M,333
 dnastack/__main__.py,sha256=EKmtIs4TBseQJi-OT_U6LqRyKLiyrGTBuTQg9zE-G2I,4376
-dnastack/constants.py,sha256=LPcirEvddWrZhY9qJLJhZbeO_556vFENTkdO5npaLkQ,114
+dnastack/constants.py,sha256=vbKzJJ---CEwR9P2AZ8zLB38xcayn3Rx2YAgVujUQC8,114
 dnastack/feature_flags.py,sha256=RK_V_Ovncoe6NeTheAA_frP-kYkZC1fDlTbbup2KYG4,1419
 dnastack/json_path.py,sha256=TyghhDf7nGQmnsUWBhenU_fKsE_Ez-HLVER6HgH5-hU,2700
 dnastack/omics_cli.py,sha256=ZppKZTHv_XjUUZyRIzSkx0Ug5ODAYrCOTsU0ezCOVrA,3694
@@ -88,8 +88,8 @@ dnastack/cli/commands/workbench/storage/commands.py,sha256=m_h2hUhTZ24YCreavRjIc
 dnastack/cli/commands/workbench/storage/update.py,sha256=man43AfkFA-9STQiSH4_SuIIgVx8GFH-RRt7ZZbc9ek,10525
 dnastack/cli/commands/workbench/storage/utils.py,sha256=uZPN6rx14y8Wymc2uDOiGj4imSJOWbDWMm1Fmta_pYE,3204
 dnastack/cli/commands/workbench/workflows/__init__.py,sha256=GLUXWR2UD5ZOlvfcUv2o2oz_k7mmPWU8650egt3rDfM,513
-dnastack/cli/commands/workbench/workflows/commands.py,sha256=xdMx45U7901F9fU3AZU7nOOeXCbqKio6CenCQpc-b6A,14036
-dnastack/cli/commands/workbench/workflows/utils.py,sha256=ME2DVlY7pRrPnDrTN5FrWPvl8oKEF4RmrmmZ79R--I4,12044
+dnastack/cli/commands/workbench/workflows/commands.py,sha256=EHNNx3uN2SpZobw6jc0a-EFC7C4NZpPP4AR7a0wOdv8,15028
+dnastack/cli/commands/workbench/workflows/utils.py,sha256=0k31Gud5E4Vgxkd-Di_7PrcxBwx4FMOg1DSAy2PsZhk,12517
 dnastack/cli/commands/workbench/workflows/versions/__init__.py,sha256=tiVcCClMNuxmBwJEJQrvm8_t-ytzjOHaILAfAGFCoQY,979
 dnastack/cli/commands/workbench/workflows/versions/commands.py,sha256=fS5YrQcTSbHUig8kDuD3daWatZtXnopUT4eyWuzQT5w,16150
 dnastack/cli/commands/workbench/workflows/versions/defaults.py,sha256=NoDsUpkrFFLzw9J6l3ebdViwt6OaNFrmGxjv3yBFMak,12265
@@ -151,8 +151,8 @@ dnastack/client/workbench/workbench_user_service/__init__.py,sha256=47DEQpj8HBSa
 dnastack/client/workbench/workbench_user_service/client.py,sha256=ZpMOFw5L3NxbC2WtKpH3OJ435zEjy0-m4p0WgzQEOB0,1219
 dnastack/client/workbench/workbench_user_service/models.py,sha256=P8WmocouYthi4gnHzNJT2F3iExWTt_2MUnskexN6Rxs,126
 dnastack/client/workbench/workflow/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-dnastack/client/workbench/workflow/client.py,sha256=qdDBFTYQq4tluFXL22syS1RZoGHbX-ZQfVXSgWj5UmI,22244
-dnastack/client/workbench/workflow/models.py,sha256=83_MLSLgFHa6OS6haX3QerUCtxEw93GCPE7D0Dq0vVo,5505
+dnastack/client/workbench/workflow/client.py,sha256=XBhfKhIrjhnszGU_195CPPiEwr8Olzqe2BmYlNHhhCE,22309
+dnastack/client/workbench/workflow/models.py,sha256=IYGityy8eqkS4ykfkx654DBtEpTQeMp2PJETJA1Y4jM,5570
 dnastack/client/workbench/workflow/utils.py,sha256=Yw9X-Gtu5lYPDCZjimFJMhrib9ELl07YyD4A-L8Y7pE,4661
 dnastack/common/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/common/auth_manager.py,sha256=AFMDIR01AQ2EPNyUZ7RMS8A8FvdRUMEhLtFjTd5Mdqw,9051
@@ -196,9 +196,9 @@ dnastack/http/authenticators/oauth2_adapter/device_code_flow.py,sha256=dXI5CyUcs
 dnastack/http/authenticators/oauth2_adapter/factory.py,sha256=ZtNXOklWEim-26ooNoPp3ji_hRg1vf4fHHnY94F0wLI,1087
 dnastack/http/authenticators/oauth2_adapter/models.py,sha256=iY7asrSElyjubInrGV5rJKKZAxJWeq7csnaj-EqMq00,943
 dnastack/http/authenticators/oauth2_adapter/token_exchange.py,sha256=nSuAsSKWa_UNqHSbPMOEk4komaFITYAnE04Sk5WOrLc,6332
-dnastack_client_library-3.1.171.dist-info/licenses/LICENSE,sha256=uwybO-wUbQhxkosgjhJlxmYATMy-AzoULFO9FUedE34,11580
-dnastack_client_library-3.1.171.dist-info/METADATA,sha256=AqSDmwqRpUB55NI79jRhQm3ROOeMmXOe7SEhY5qtnII,1766
-dnastack_client_library-3.1.171.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-dnastack_client_library-3.1.171.dist-info/entry_points.txt,sha256=Y6OeicsiyGn3-8D-SiV4NiKlJgXfkSqK88kFBR6R1rY,89
-dnastack_client_library-3.1.171.dist-info/top_level.txt,sha256=P2RgRyqJ7hfNy1wLVRoVLJYEppUVkCX3syGK9zBqkt8,9
-dnastack_client_library-3.1.171.dist-info/RECORD,,
+dnastack_client_library-3.1.174.dist-info/licenses/LICENSE,sha256=uwybO-wUbQhxkosgjhJlxmYATMy-AzoULFO9FUedE34,11580
+dnastack_client_library-3.1.174.dist-info/METADATA,sha256=JU8SXKzCq8yUGGEQi9Jw-xFnmNbY1UTTRjpXfOKNoqU,1766
+dnastack_client_library-3.1.174.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+dnastack_client_library-3.1.174.dist-info/entry_points.txt,sha256=Y6OeicsiyGn3-8D-SiV4NiKlJgXfkSqK88kFBR6R1rY,89
+dnastack_client_library-3.1.174.dist-info/top_level.txt,sha256=P2RgRyqJ7hfNy1wLVRoVLJYEppUVkCX3syGK9zBqkt8,9
+dnastack_client_library-3.1.174.dist-info/RECORD,,