dnastack-client-library 3.1.138__py3-none-any.whl → 3.1.139__py3-none-any.whl

dnastack/__init__.py

@@ -1,5 +1,5 @@
-from dnastack.client.collections.client import CollectionServiceClient
-from dnastack.client.data_connect import DataConnectClient
-from dnastack.client.drs import DrsClient
-from dnastack.client.models import ServiceEndpoint
-from dnastack.context.helper import use
+from dnastack.client.collections.client import CollectionServiceClient  # noqa: F401
+from dnastack.client.data_connect import DataConnectClient  # noqa: F401
+from dnastack.client.drs import DrsClient  # noqa: F401
+from dnastack.client.models import ServiceEndpoint  # noqa: F401
+from dnastack.context.helper import use  # noqa: F401

dnastack/alpha/app/workbench.py

@@ -171,7 +171,7 @@ class Workbench:
 			if not r.has_failed() and not r.was_canceled():
 				try:
 					self.cancel_run(run_status.run_id)
-				except Exception as rex:
+				except Exception:
 					bad_run_ids.append(run_status.run_id)
 		if(len(bad_run_ids) > 0):
 			raise WorkbenchRunException("Could not cancel all runs in batch "+batch_id+".  Run IDs: "+"\n".join(bad_run_ids), run_ids=bad_run_ids)
@@ -196,10 +196,10 @@ class Workbench:
 			if this_runs_state.has_failed():
 				batch_error_message = batch_error_message + "\nRun {run_id} failed with status {run_state}".format(run_id=run.run_id, run_state=run.state)
 			elif this_runs_state.was_canceled():
-				batch_error_message = batch_error_message + "\nRun {run_id} was canceled".format(run_id=run.run_id, run_state=run.state)
+				batch_error_message = batch_error_message + "\nRun {run_id} was canceled".format(run_id=run.run_id, )
 			elif batch_error_message == "":
 				if current_unanimous_state is None:
-					current_unanimous_state = RunStatus(run.state);
+					current_unanimous_state = RunStatus(run.state)
 				elif current_unanimous_state != this_runs_state:
 					current_unanimous_state = RunStatus.UNKNOWN
 
@@ -315,7 +315,6 @@ class Workbench:
 		for task_log in run.task_logs:
 			if task_log.name == task_name:
 				return self.stream_task_log(run_id=run, task_id=task_log.task_id, log_type=log_type, max_bytes=max_bytes)
-				return self._get_ewes_client().stream_task_logs(run_id=run, task_id=task_log.task_id, log_type=logtype, max_bytes=max_bytes)
 
 	def stream_task_log(self, run: Union[ExtendedRun, str], task_id: str, log_type: LogType, max_bytes: Optional[int] = None) -> Iterable[bytes]:
 		return self._get_ewes_client().stream_task_logs(run_id=run, task_id=task_id, log_type=log_type, max_bytes=max_bytes)

dnastack/alpha/client/wes/client.py

@@ -313,12 +313,12 @@ class WesClient(BaseServiceClient):
 
     def get_service_info(self):
         with self.create_http_session() as session:
-            response = session.get(urljoin(self.endpoint.url, f'service-info'))
+            response = session.get(urljoin(self.endpoint.url, 'service-info'))
             return response.json()
 
     def get_runs(self, page_size: Optional[int] = None, page_token: Optional[str] = None) -> Iterator[_Run]:
         # GET /runs
-        return ResultIterator(RunListLoader(initial_url=urljoin(self.endpoint.url, f'runs'),
+        return ResultIterator(RunListLoader(initial_url=urljoin(self.endpoint.url, 'runs'),
                                             page_size=page_size,
                                             page_token=page_token,
                                             http_session=self.create_http_session()))

dnastack/cli/commands/config/endpoints.py

@@ -470,7 +470,7 @@ class EndpointCommandHandler:
 
                 node = e.parent or obj
 
-                self.__logger.debug(f'__repair_path: LOOP: ***** Broken Path Detected *****')
+                self.__logger.debug('__repair_path: LOOP: ***** Broken Path Detected *****')
                 self.__logger.debug(f'__repair_path: LOOP: type(e.parent) => {type(e.parent).__name__}')
                 self.__logger.debug(f'__repair_path: LOOP: e.parent => {e.parent}')
                 self.__logger.debug(f'__repair_path: LOOP: last_visited_node => {last_visited_node}')
@@ -478,10 +478,10 @@ class EndpointCommandHandler:
                 annotation = node.__annotations__[last_visited_node]
 
                 if hasattr(node, last_visited_node) and getattr(node, last_visited_node):
-                    self.__logger.debug(f'__repair_path: LOOP: No repair')
+                    self.__logger.debug('__repair_path: LOOP: No repair')
                 elif str(annotation).startswith('typing.Union[') or str(annotation).startswith("typing.Optional["):
                     # Dealing with Union/Optional
-                    self.__logger.debug(f'__repair_path: LOOP: Handling union and optional')
+                    self.__logger.debug('__repair_path: LOOP: Handling union and optional')
                     self.__logger.debug(f'__repair_path: LOOP: annotation.__args__ => {annotation.__args__}')
                     self.__initialize_default_value(node, last_visited_node, annotation.__args__[0])
                 else:
@@ -512,11 +512,11 @@ class EndpointCommandHandler:
             setattr(node, property_name, annotation())
 
     def __get_place_holder(self, cls):
-        if cls == str:
+        if cls is str:
             return ''
-        elif cls == int or cls == float:
+        elif cls is int or cls is float:
             return 0
-        elif cls == bool:
+        elif cls is bool:
             return False
         else:
             raise NotImplementedError(cls)
@@ -592,7 +592,7 @@ class EndpointCommandHandler:
                 while ref_path:
                     property_name = ref_path.pop(0)
                     local_reference = local_reference[property_name]
-            except KeyError as e:
+            except KeyError:
                 raise RuntimeError(f'The reference {reference_url} for the configuration is undefined.')
             return self.__resolve_json_reference(local_reference, root)
 

dnastack/cli/commands/publisher/collections/items.py

@@ -9,7 +9,6 @@ from dnastack.cli.commands.utils import MAX_RESULTS_ARG
 from dnastack.cli.core.command import formatted_command
 from dnastack.cli.core.command_spec import ArgumentSpec, RESOURCE_OUTPUT_ARG
 from dnastack.cli.core.group import formatted_group
-from dnastack.cli.helpers.exporter import to_json, normalize
 from dnastack.cli.helpers.iterator_printer import show_iterator, OutputFormat
 from dnastack.client.collections.model import CreateCollectionItemsRequest, DeleteCollectionItemRequest, \
     CollectionItemListOptions

dnastack/cli/commands/publisher/datasources/utils.py

@@ -1,4 +1,4 @@
-from typing import Dict, Any, Optional
+from typing import Dict, Any
 from imagination import container
 from dnastack.cli.helpers.client_factory import ConfigurationBasedClientFactory
 from dnastack.client.datasources.client import DataSourceServiceClient

dnastack/cli/commands/workbench/storage/add.py

@@ -12,7 +12,7 @@ from dnastack.cli.core.command_spec import ArgumentSpec, ArgumentType, CONTEXT_A
 from dnastack.cli.core.group import formatted_group
 from dnastack.cli.helpers.exporter import to_json, normalize
 from dnastack.client.workbench.storage.models import AwsStorageAccountCredentials, StorageAccount, Provider, \
-    GcpStorageAccountCredentials, AzureStorageAccountCredentials, AzureCredentialsType
+    GcpStorageAccountCredentials, AzureStorageAccountCredentials
 from dnastack.common.json_argument_parser import FileOrValue
 
 

dnastack/cli/commands/workbench/storage/update.py

@@ -12,7 +12,7 @@ from dnastack.cli.core.command_spec import ArgumentSpec, ArgumentType, CONTEXT_A
 from dnastack.cli.core.group import formatted_group
 from dnastack.cli.helpers.exporter import to_json, normalize
 from dnastack.client.workbench.storage.models import AwsStorageAccountCredentials, StorageAccount, Provider, \
-    GcpStorageAccountCredentials, AzureCredentialsType, AzureStorageAccountCredentials
+    GcpStorageAccountCredentials, AzureStorageAccountCredentials
 from dnastack.common.json_argument_parser import FileOrValue
 
 

dnastack/cli/commands/workbench/utils.py

@@ -41,7 +41,7 @@ def get_user_client(context_name: Optional[str] = None,
     factory: ConfigurationBasedClientFactory = container.get(ConfigurationBasedClientFactory)
     try:
         return factory.get(WorkbenchUserClient, endpoint_id=endpoint_id, context_name=context_name)
-    except AssertionError as e:
+    except AssertionError:
         _populate_workbench_endpoint()
         return factory.get(WorkbenchUserClient, endpoint_id=endpoint_id, context_name=context_name)
 

dnastack/cli/core/command_formatting.py

@@ -2,7 +2,7 @@ import click
 from click import Command, Option, Parameter, Argument
 from typing import List
 
-from dnastack.cli.core.constants import *
+from dnastack.cli.core.constants import APP_NAME, INDENT, OPTION_WIDTH, OPTION_PADDING, TOTAL_WIDTH
 from dnastack.cli.core.formatting_utils import get_visual_length, wrap_text
 from dnastack.cli.core.styling import styler
 

dnastack/cli/core/group_formatting.py

@@ -1,7 +1,6 @@
 from typing import Optional, List
 
 import click
-from click import style
 
 from dnastack.cli.core.constants import APP_NAME, INDENT, OPTION_WIDTH, TOTAL_WIDTH, OPTION_PADDING
 from dnastack.cli.core.formatting_utils import wrap_text, get_visual_length

dnastack/cli/core/styling.py

@@ -1,5 +1,4 @@
-from typing import Optional, Any
-import click
+from typing import Any
 
 from .themes import theme_manager
 

dnastack/cli/core/themes.py

@@ -1,5 +1,5 @@
 from dataclasses import dataclass
-from typing import Dict, Tuple, Optional
+from typing import Dict, Optional
 import os
 import subprocess
 import platform

dnastack/client/base_exceptions.py

@@ -95,7 +95,7 @@ class DataConnectError(RuntimeError):
                 blocks.append(f'\nResponse Body:\n{self.details}')
 
             if self.urls:
-                blocks.append(f'\nURL:')
+                blocks.append('\nURL:')
                 for url in self.__urls:
                     blocks.append(f' → {url}')
 

dnastack/client/collections/client.py

@@ -7,7 +7,7 @@ from pydantic import ValidationError
 from dnastack.client.base_client import BaseServiceClient
 from dnastack.client.base_exceptions import UnauthenticatedApiAccessError, UnauthorizedApiAccessError
 from dnastack.client.collections.model import Collection, CreateCollectionItemsRequest, DeleteCollectionItemRequest, \
-    CollectionItem, CollectionItemListOptions, PaginatedResource, PageableApiError, CollectionItemListResponse, \
+    CollectionItem, CollectionItemListOptions, PageableApiError, CollectionItemListResponse, \
     CollectionStatus
 from dnastack.client.data_connect import DATA_CONNECT_TYPE_V1_0
 from dnastack.client.models import ServiceEndpoint
@@ -120,7 +120,7 @@ class CollectionItemListResultLoader(ResultLoader):
 
             try:
                 response_body = response.json() if response_text else dict()
-            except Exception as e:
+            except Exception:
                 self.logger.error(f'{self.__service_url}: Unexpectedly non-JSON response body from {current_url}')
                 raise PageableApiError(
                     f'Unable to deserialize JSON from {response_text}.',
@@ -132,7 +132,7 @@ class CollectionItemListResultLoader(ResultLoader):
 
             try:
                 api_response = self.extract_api_response(response_body)
-            except ValidationError as e:
+            except ValidationError:
                 raise PageableApiError(
                     f'Invalid Response Body: {response_body}',
                     status_code,
@@ -219,7 +219,7 @@ class CollectionServiceClient(BaseServiceClient):
                               trace: Optional[Span] = None) -> Iterator[CollectionItem]:
         """ List all items in a collection """
         trace = trace or Span(origin=self)
-        with self.create_http_session() as session:
+        with self.create_http_session():
             return ResultIterator(CollectionItemListResultLoader(
                 service_url=urljoin(self.endpoint.url, f'collection/{collection_id_or_slug_name_or_db_schema_name}/items'),
                 http_session=self.create_http_session(),
@@ -272,7 +272,7 @@ class CollectionServiceClient(BaseServiceClient):
                           collection_id: str,
                           trace: Optional[Span] = None) -> None:
         trace = trace or Span(origin=self)
-        local_logger = trace.create_span_logger(self._logger)
+        trace.create_span_logger(self._logger)
         with self.create_http_session() as session:
             delete_url = self._get_single_collection_url(collection_id)
             session.delete(delete_url, trace_context=trace)

dnastack/client/datasources/client.py

@@ -1,14 +1,12 @@
-from pprint import pformat
 from typing import List, Optional
 from pydantic import BaseModel, ValidationError
 from dnastack.client.base_client import BaseServiceClient
 from dnastack.client.base_exceptions import (
     UnauthenticatedApiAccessError, UnauthorizedApiAccessError
 )
-from dnastack.client.collections.client import STANDARD_COLLECTION_SERVICE_TYPE_V1_0, \
-    STANDARD_DATASOURCE_SERVICE_TYPE_V1_0
+from dnastack.client.collections.client import STANDARD_DATASOURCE_SERVICE_TYPE_V1_0
 from dnastack.client.collections.model import PageableApiError
-from dnastack.client.datasources.model import DataSource, DataSourceListOptions
+from dnastack.client.datasources.model import DataSource
 from dnastack.client.result_iterator import ResultLoader, InactiveLoaderError, ResultIterator
 from dnastack.http.session import HttpSession, HttpError
 from dnastack.common.tracing import Span

dnastack/client/drs.py

@@ -67,7 +67,7 @@ class DRSDownloadException(RuntimeError):
         self.errors = errors
 
     def __repr__(self):
-        error_msg = f"Downloads failed:\n"
+        error_msg = "Downloads failed:\n"
         for err in self.errors:
             error_msg += f"{err}\n"
         return error_msg

dnastack/client/service_registry/factory.py

@@ -76,7 +76,7 @@ class ClientFactory:
                 for service in registry.list_services():
                     entries.append(RegisteredServiceInfo(source_url=registry.url,
                                                          info=service))
-            except:
+            except Exception:
                 self.__logger.warning(format_exc())
                 self.__logger.warning(f'Unable to retrieve the list of services from {registry.url}')
 

dnastack/client/workbench/base_client.py

@@ -136,7 +136,7 @@ class WorkbenchResultLoader(ResultLoader):
 
             try:
                 response_body = response.json() if response_text else dict()
-            except Exception as e:
+            except Exception:
                 self.logger.error(f'{self.__service_url}: Unexpectedly non-JSON response body from {current_url}')
                 raise PageableApiError(
                     f'Unable to deserialize JSON from {response_text}.',
@@ -147,7 +147,7 @@ class WorkbenchResultLoader(ResultLoader):
 
             try:
                 api_response = self.extract_api_response(response_body)
-            except ValidationError as e:
+            except ValidationError:
                 raise PageableApiError(
                     f'Invalid Response Body: {response_body}',
                     status_code,

dnastack/client/workbench/workbench_user_service/client.py

@@ -30,6 +30,6 @@ class WorkbenchUserClient(BaseServiceClient):
     def get_user_config(self) -> WorkbenchUser:
         with self.create_http_session() as session:
             response = session.get(
-                urljoin(self.endpoint.url, f'users/me')
+                urljoin(self.endpoint.url, 'users/me')
             )
         return WorkbenchUser(**response.json())

dnastack/common/events.py

@@ -93,7 +93,7 @@ class EventSource(AbstractEventSource):
             self._event_logger.level
         )
 
-        event_logger.debug(f'BEGIN')
+        event_logger.debug('BEGIN')
 
         if event_type in self._event_handlers:
             for handler in self._event_handlers[event_type]:
@@ -104,7 +104,7 @@ class EventSource(AbstractEventSource):
         else:
             pass
 
-        event_logger.debug(f'END')
+        event_logger.debug('END')
 
     def on(self, event_type: str, handler: Union[EventHandler, Callable[[Event], None]]):
         self._raise_error_for_non_registered_event_type(event_type)

dnastack/common/json_argument_parser.py

@@ -13,9 +13,14 @@ logger = get_logger('json_argument_parser')
 
 try:
     from httpie.cli.argtypes import KeyValueArgType
-    from httpie.cli.constants import *
+    from httpie.cli.constants import (
+        SEPARATOR_GROUP_NESTED_JSON_ITEMS,
+        SEPARATOR_DATA_EMBED_FILE_CONTENTS,
+        SEPARATOR_DATA_EMBED_RAW_JSON_FILE,
+        SEPARATOR_DATA_RAW_JSON
+    )
     from httpie.cli.nested_json import interpret_nested_json
-except UnsupportedOperation as e:
+except UnsupportedOperation:
     # NOTE This is just to bypass the error raised by Colab's Jupyter Notebook.
     # FIXME Fix the issue where ncurses raises io.UnsupportedOperation.
     if currently_in_debug_mode():
@@ -121,7 +126,7 @@ def is_json_object_or_array_string(string: str) -> bool:
     try:
         json_val = json.loads(string)
         return isinstance(json_val, list) or isinstance(json_val, dict)
-    except ValueError as e:
+    except ValueError:
         return False
 
 

dnastack/common/logger.py

@@ -123,6 +123,6 @@ def get_logger_for(ref: object,
 
 
 def alert_for_deprecation(message: str):
-    l = get_logger('DEPRECATED')
-    l.warning(message)
+    logger = get_logger('DEPRECATED')
+    logger.warning(message)
     print_stack()

dnastack/constants.py

@@ -1,5 +1,5 @@
 import os
 
-__version__ = "v3.1.138"
+__version__ = "v3.1.139"
 
 LOCAL_STORAGE_DIRECTORY = os.path.join(os.path.expanduser("~"), '.dnastack')

dnastack/http/authenticators/oauth2.py

@@ -145,14 +145,14 @@ class OAuth2Authenticator(Authenticator):
         session_info = self._session_info or self._session_manager.restore(session_id)
 
         if session_info is None:
-            logger.debug(f'refresh: The session does not exist.')
+            logger.debug('refresh: The session does not exist.')
             raise ReauthenticationRequired('No existing session information available')
 
         if session_info.dnastack_schema_version < 3:
             logger.debug('refresh: Cannot refresh the tokens as there are not enough information to perform the '
                          'action. You can use the session ID for debugging further.')
 
-            event_details['reason'] = f'Not enough information for token refresh'
+            event_details['reason'] = 'Not enough information for token refresh'
             self.events.dispatch('refresh-failure', event_details)
 
             raise ReauthenticationRequired(f'The stored session information does not provide enough information to '

dnastack/http/authenticators/oauth2_adapter/client_credential.py

@@ -54,11 +54,11 @@ class ClientCredentialAdapter(OAuth2Adapter):
             sub_logger.debug(f'exchange_tokens: {auth_info.token_endpoint}: HTTP {response.status_code}:\n{response.text}')
 
             if not response.ok:
-                sub_logger.debug(f'exchange_token: Token exchange fails.')
+                sub_logger.debug('exchange_token: Token exchange fails.')
                 raise AuthException(f'Failed to perform client-credential authentication for '
                                     f'{auth_info.client_id} as the server responds with HTTP {response.status_code}:'
                                     f'\n\n{response.text}\n',
                                     resource_urls)
 
-            sub_logger.debug(f'exchange_token: Token exchange OK')
+            sub_logger.debug('exchange_token: Token exchange OK')
             return response.json()

dnastack/http/authenticators/oauth2_adapter/device_code_flow.py

@@ -78,7 +78,7 @@ class DeviceCodeFlowAdapter(OAuth2Adapter):
         device_code_json = init_res.json()
 
         if init_res.ok:
-            logger.debug(f'exchange_tokens: Received the initial OK response')
+            logger.debug('exchange_tokens: Received the initial OK response')
 
             device_code = device_code_json["device_code"]
             device_verify_uri = device_code_json["verification_uri_complete"]
@@ -94,7 +94,7 @@ class DeviceCodeFlowAdapter(OAuth2Adapter):
             self.__console.print(f"Please go to {device_verify_uri} to continue.\n", to_stderr=True)
             self._events.dispatch('blocking-response-required', dict(kind='user_verification', url=device_verify_uri))
         else:
-            logger.debug(f'exchange_tokens: Received the ERROR response')
+            logger.debug('exchange_tokens: Received the ERROR response')
 
             if "error" in init_res.json():
                 error_message = f'The device code request failed with message "{device_code_json["error"]}"'

dnastack/http/session.py

@@ -183,9 +183,9 @@ class HttpSession(AbstractContextManager):
 
                 authenticator.before_request(session, trace_context=trace_context)
             else:
-                logger.debug(f'AUTH: no authenticators configured')
+                logger.debug('AUTH: no authenticators configured')
         else:
-            logger.debug(f'AUTH: the authentication has been disabled')
+            logger.debug('AUTH: the authentication has been disabled')
             self.events.dispatch('authentication-ignored', dict(method=method, url=url))
 
         http_method = method.lower()
@@ -331,18 +331,18 @@ class HttpSession(AbstractContextManager):
                     parsed_response = None
 
                 if isinstance(parsed_response, dict) and parsed_response.get('error') == 'invalid_token':
-                    trace_logger.error(f'The server responded with an invalid token error.')
+                    trace_logger.error('The server responded with an invalid token error.')
                     token = last_known_session_info.access_token
                     if token:
                         trace_logger.error(f'The token claims are {jwt.decode(token, options={"verify_signature": False})}.')
                     else:
-                        trace_logger.error(f'The token is not available for this request.')
+                        trace_logger.error('The token is not available for this request.')
                 else:
                     pass  # No need for additional error handling.
             else:
                 pass  # As there is no session info, there is no additional info to extract.
         else:
-            trace_logger.error(f'The authenticator is not available or supported for extracting additional info.')
+            trace_logger.error('The authenticator is not available or supported for extracting additional info.')
 
         raise (ClientError if response.status_code < 500 else ServerError)(response, trace_context=trace_context)
 

{dnastack_client_library-3.1.138.dist-info → dnastack_client_library-3.1.139.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: dnastack-client-library
-Version: 3.1.138
+Version: 3.1.139
 Summary: "DNAstack's GA4GH library and CLI"
 Home-page: https://www.dnastack.com
 Author: DNAstack

{dnastack_client_library-3.1.138.dist-info → dnastack_client_library-3.1.139.dist-info}/RECORD

@@ -1,6 +1,6 @@
-dnastack/__init__.py,sha256=Bpfm77MeoZNmZHSgDK9wlgVPkcdE73ur6_7Zihorb4o,263
+dnastack/__init__.py,sha256=mslf7se8vBSK_HkqWTGPdibeVhT4xyKXgzQBV7dEK1M,333
 dnastack/__main__.py,sha256=3rydT8oj5G1IN0asiqv9oaQw2xmyIlVge8c8wUjo0HA,3532
-dnastack/constants.py,sha256=3wClCfHKH0drDWZhBLnW7vkNEgX2ScO_y5sPsdhmPvY,114
+dnastack/constants.py,sha256=lXEVuXC5TIWYQas0joLaIRApFzO_g0nDo9tZuDQw-WA,114
 dnastack/feature_flags.py,sha256=RK_V_Ovncoe6NeTheAA_frP-kYkZC1fDlTbbup2KYG4,1419
 dnastack/json_path.py,sha256=TyghhDf7nGQmnsUWBhenU_fKsE_Ez-HLVER6HgH5-hU,2700
 dnastack/omics_cli.py,sha256=ZppKZTHv_XjUUZyRIzSkx0Ug5ODAYrCOTsU0ezCOVrA,3694
@@ -8,7 +8,7 @@ dnastack/alpha/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/alpha/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/alpha/app/explorer.py,sha256=PV8B2cJjGbORj-wi-g-_g1He6AUn4yD_StTyNoZjC-Q,5837
 dnastack/alpha/app/publisher.py,sha256=HPsUrSkokhx0iiOpXXc-Y4tkGjvVPciVqbg9l8yF-2U,3836
-dnastack/alpha/app/workbench.py,sha256=6MSwtjLWDTh_qRocU74YXQPXFo1FtvdqBdW2_ieYGUc,15632
+dnastack/alpha/app/workbench.py,sha256=c_OQxjvkvYXxafauF5EnOvVddxUzN4hbudMzn-TzVs8,15476
 dnastack/alpha/app/publisher_helper/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/alpha/app/publisher_helper/collection_service.py,sha256=eFV8eJ15DFSn7CcsH343sk0JIfigTV_KFZJ0dSEPSEw,6395
 dnastack/alpha/app/publisher_helper/data_connect.py,sha256=kBloMM-RO8Z_ctxHBZRs-9z1aFp-j4jgzjGI7JFa_3o,995
@@ -26,7 +26,7 @@ dnastack/alpha/client/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3h
 dnastack/alpha/client/collections/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/alpha/client/collections/client.py,sha256=JOyAKVRHT3ggge5y46q2b7MwVgsB8Y93FIdmsURwKes,3038
 dnastack/alpha/client/wes/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-dnastack/alpha/client/wes/client.py,sha256=WrwaQuD6WvlTJwjXj4OFVZkA_jMYYK7cRPGfQEj1S6I,13496
+dnastack/alpha/client/wes/client.py,sha256=vMd70XVYt4v3c-kzHKp5VpISvlTYrkvva4ru0qB6V3E,13494
 dnastack/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/cli/commands/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/cli/commands/utils.py,sha256=ZwKTyyvqBTrt27cF9wF6SglE01t7NkHWLMjXegi_6iA,574
@@ -40,7 +40,7 @@ dnastack/cli/commands/collections/utils.py,sha256=o59nT42PACZiGo-dgo5Qjg8UDWgvcj
 dnastack/cli/commands/config/__init__.py,sha256=xBBLgV5tvRr45gWgZhGHLxB12fNMF8LDqeBvMXCt_sk,706
 dnastack/cli/commands/config/commands.py,sha256=ANyepqMCCwL2qtbrlS4OxYyGzbMQLF_P7iiKnACIsj8,813
 dnastack/cli/commands/config/contexts.py,sha256=OcTd_XhTyDf0-CyLnmdYbD7dlO8r1peprTtQV-A-JEc,6095
-dnastack/cli/commands/config/endpoints.py,sha256=6i7g9jkUyxgrp-tt4YLpc5uWY3C4yoXNHswPeaRDBwk,23914
+dnastack/cli/commands/config/endpoints.py,sha256=2R6bw7cx32iJ_zzu4C7nUsQiDFsu0tvj_PplmpgsA0E,23906
 dnastack/cli/commands/config/registries.py,sha256=PCSA05mLuG8_4XR6Gl6yjZy6wPXT4BLhTRMIjO6Zq0I,6422
 dnastack/cli/commands/dataconnect/__init__.py,sha256=pmSnzfQQkhupJ-ORfTNVo3ev9ASpOGk5Cv4kMZA7zQ8,521
 dnastack/cli/commands/dataconnect/commands.py,sha256=Xeu7FLIgTJj0QRSZ-4H6SabsqEJ5Otq1ZH8zAxF984A,1760
@@ -52,14 +52,14 @@ dnastack/cli/commands/drs/utils.py,sha256=tGogaIlXKnk03GqitzeDfo893JlP7Nc_X28sH-
 dnastack/cli/commands/publisher/__init__.py,sha256=G8WNdx1UwanoA4X349ghv8Zyv5YizB8ryeJmwu9px8o,443
 dnastack/cli/commands/publisher/collections/__init__.py,sha256=KmclN_KY3ctVhtv-i8rxXpWTshPCj1tY6yhud4vrXYQ,636
 dnastack/cli/commands/publisher/collections/commands.py,sha256=A82NphvnD-9JuN2dVU_07EbAvB1NE7Em07IU7eDhagc,9454
-dnastack/cli/commands/publisher/collections/items.py,sha256=gmSCaXXqxk4lElZnqkU6KZCLa5QSDgTd5Zz0LWSBMDQ,6101
+dnastack/cli/commands/publisher/collections/items.py,sha256=6V8w0wugRYQIwBSqHoYhkzJyiA5Bp5uDhg7tvxMa-9A,6040
 dnastack/cli/commands/publisher/collections/tables.py,sha256=N348MU_p-OKweJwKYtNbpvCD3ZmGGbS-quz7gnsAc1c,2130
 dnastack/cli/commands/publisher/collections/utils.py,sha256=GNgGv29z7eumQqbw1IFFasJeDyxH2KQGQl0q6UPooVU,6244
 dnastack/cli/commands/publisher/datasources/__init__.py,sha256=90suC61lfFF1WzIU9f8lO0_DiLWIQF2Dy46_Yad3CD8,327
 dnastack/cli/commands/publisher/datasources/commands.py,sha256=nG_h44zWA061J5UZCofNhYGpBY-rJhAQuvPEdaGS8LY,1320
-dnastack/cli/commands/publisher/datasources/utils.py,sha256=DGVZY6e0Faa0sNRXxqu50z7kGACX4YYkF-cgtMLaUQc,745
+dnastack/cli/commands/publisher/datasources/utils.py,sha256=DjhT7yYj3NSkE9APvAwUIecVoy-PXcutgZAjyUUdiU0,735
 dnastack/cli/commands/workbench/__init__.py,sha256=H4CGbc31-21mRZqJMtzi2Cg4e_D9a9ibqFjwXQTcXNY,1092
-dnastack/cli/commands/workbench/utils.py,sha256=V2I192k4XAg2h-DrsdatqIZfguflh6WR7q5pSBojUX0,4354
+dnastack/cli/commands/workbench/utils.py,sha256=5r3OPH7sg4tNFgiPM7r3ZoyHMnrg1J7PxOxQhKwT8gA,4349
 dnastack/cli/commands/workbench/engines/__init__.py,sha256=qB1rfGXNJ6_N6F5UYXos4hHDwhm8PtlbrCCt_uNhIIw,653
 dnastack/cli/commands/workbench/engines/commands.py,sha256=dHie3J2wDSMDQ9HB9rJQNL3oVyngHk44pKO5nj34mX0,2465
 dnastack/cli/commands/workbench/engines/healthchecks.py,sha256=CEcbEqpAC1NsMRXxfl9Ti2yAekuBAjlB7Moz-IPrkEA,2351
@@ -77,9 +77,9 @@ dnastack/cli/commands/workbench/samples/__init__.py,sha256=cRfeKCdHO-0Dq3PFoVcqO
 dnastack/cli/commands/workbench/samples/commands.py,sha256=0h_sihwJZaZPyGV7sEStzhF4HUPNYU2EnjjA32pHkZs,2232
 dnastack/cli/commands/workbench/samples/files.py,sha256=ihZgHV04fXC8-B0EFZ463SesgI93YSbXXlEtYyaUn8U,3021
 dnastack/cli/commands/workbench/storage/__init__.py,sha256=gRq4_3dFBA13vAOOKCY4rYMC4Ksr6rypyCCUuzXVn-g,625
-dnastack/cli/commands/workbench/storage/add.py,sha256=RKT1_ln9T_UWcAHUsCGsXqnv_kexQLO1Xmb_CpqIuHw,10097
+dnastack/cli/commands/workbench/storage/add.py,sha256=GVL7yX8eXOgPar_TVYFQvoFedIG7p-9esT-0l9MDyig,10075
 dnastack/cli/commands/workbench/storage/commands.py,sha256=m_h2hUhTZ24YCreavRjIcFCmh7jqCtWszbhWJ4xXCPY,4556
-dnastack/cli/commands/workbench/storage/update.py,sha256=1ZUwl1t2AEALJvLWqqZAl1dH7V2HMILYXoDutokR1L0,10547
+dnastack/cli/commands/workbench/storage/update.py,sha256=man43AfkFA-9STQiSH4_SuIIgVx8GFH-RRt7ZZbc9ek,10525
 dnastack/cli/commands/workbench/storage/utils.py,sha256=uZPN6rx14y8Wymc2uDOiGj4imSJOWbDWMm1Fmta_pYE,3204
 dnastack/cli/commands/workbench/workflows/__init__.py,sha256=GLUXWR2UD5ZOlvfcUv2o2oz_k7mmPWU8650egt3rDfM,513
 dnastack/cli/commands/workbench/workflows/commands.py,sha256=xdMx45U7901F9fU3AZU7nOOeXCbqKio6CenCQpc-b6A,14036
@@ -90,14 +90,14 @@ dnastack/cli/commands/workbench/workflows/versions/defaults.py,sha256=NoDsUpkrFF
 dnastack/cli/commands/workbench/workflows/versions/transformations.py,sha256=jrhi2UpOULM98F9yHjmomN7Ax2WIodOah5M95mY4Yfc,9271
 dnastack/cli/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/cli/core/command.py,sha256=H6tG2D7X6B0WvCdQdpcYE4QZSJ19A5nTYUq-NlHW-to,8031
-dnastack/cli/core/command_formatting.py,sha256=VRQEq3j0j7frK8Z-e1y_ZC155hl_Lx9hkBU9mJXRU2o,10370
+dnastack/cli/core/command_formatting.py,sha256=be2SKCM0ZzOF8O5ySStGVBGD43rYAqbOP6Xx_dDYCTc,10428
 dnastack/cli/core/command_spec.py,sha256=IzYn3631jlqS10ISMYrPAvIfPCFQbU9tw0mV9qHoxJE,3076
 dnastack/cli/core/constants.py,sha256=fsejVpuAi0H93RDAzEXd_nik_L_R3v0MUW_1bcPMJUA,273
 dnastack/cli/core/formatting_utils.py,sha256=9scLgP_HlO610T-JZT9sZl8bSAfkKcXtZckg-fBu1FE,898
 dnastack/cli/core/group.py,sha256=Ar3p1TB5pV1yztIYEQ2LdhaX94DoWD7iHBTwWCpkT-U,3171
-dnastack/cli/core/group_formatting.py,sha256=gI7eUnQyFhwW69TMYhmYeciCrloSUah1hanRqM5fgrE,5239
-dnastack/cli/core/styling.py,sha256=j8bBf4dVAtmp-SC7OWixbxkbZj5FcHkQxax580ZDSvU,8053
-dnastack/cli/core/themes.py,sha256=C9ACUmIio9OITp_9RjwRiwzlH1TCgiPlF-dLuaBuaUY,14724
+dnastack/cli/core/group_formatting.py,sha256=YpFr4nOghUe2SMD4dUP-UZ-ToCuG5IrKRMr6C7USZmw,5215
+dnastack/cli/core/styling.py,sha256=pXCIwJkcesQQCBaYM8dA0S6kf67Fi5OueL8UdLuIreE,8030
+dnastack/cli/core/themes.py,sha256=2CU4RzqCoXZuTSK1wmzSGGMDXkEvZ4Nw8Bd1ttMe-qE,14717
 dnastack/cli/helpers/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/cli/helpers/client_factory.py,sha256=gErjjYSChgEK_5S_vlTBd2NQm25D1Qg-pGZUi03hqtU,7338
 dnastack/cli/helpers/exporter.py,sha256=Pb8LO7AdvQ2uPfbt6pXsbow1dzriB2S0oD5HtrCDB_8,2610
@@ -105,27 +105,27 @@ dnastack/cli/helpers/iterator_printer.py,sha256=0JD8RIcbLbCXDsaRFgk_-qO2mVcsmBg-
 dnastack/cli/helpers/printer.py,sha256=IdGoEnBWtzgPAE2KLoZEfwshn0tkrTu-XXtN-KXj8QI,5283
 dnastack/client/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/client/base_client.py,sha256=ZhaWHHTQcuPun6RdrtCdShGRYoY18hEKAIHmr8Z728M,3730
-dnastack/client/base_exceptions.py,sha256=QoYa-LzT5C0o7eq6Ek4R_-clBL0nZ5v7qdFBcCoUiw4,2888
+dnastack/client/base_exceptions.py,sha256=bNplPuE5wHxIbMI10wk6uk2aFhYub0KT2dcPC8HqbSM,2887
 dnastack/client/constants.py,sha256=6nB1QKz-GEx8BSnPLFafKGG1WDF3l0P0_HlC01FSvwc,1849
 dnastack/client/data_connect.py,sha256=6qDx6-dl-fmakEMYK_jfTgUcYe1yl8eTCMPI_8tRUwg,26211
-dnastack/client/drs.py,sha256=7iNu58YAtQHKFFFNllFyXATfasT_ndkgSkBKKgDbiKc,21225
+dnastack/client/drs.py,sha256=geLN7jTurC4K-XtwSgGD19HoEeOe1EIopX9znc_Wpb4,21224
 dnastack/client/factory.py,sha256=PQGYUGhKeqyJtEtc-bZM5OlEup9K7lB-qwmNiII_4HU,6288
 dnastack/client/models.py,sha256=qkk06k12UZ-kG8x2fT198CX9TFJ8Svt3BjfzuTitqBA,2888
 dnastack/client/result_iterator.py,sha256=00zEs7YbPJyt8d-6j7eHnmSVurP8hIOarj4FwsiR7xc,1908
 dnastack/client/collections/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-dnastack/client/collections/client.py,sha256=NC3SXerFzD-iIDHHuazib0L0pWIA23TD_-SMEruGjWw,16062
+dnastack/client/collections/client.py,sha256=xwXwxRWVXkrKoekLBVlehQz_PoY_nNoPmdurWgE9n6k,16007
 dnastack/client/collections/model.py,sha256=JO-eC_jc7hY9PBvST3x1vkmJE0LPDAbcUq5VBKcGyLM,3492
 dnastack/client/datasources/__init__.py,sha256=HxDIHuQX8KMWr3o70ucL3x79pXKaIHbBq7JqmyoRGxM,179
-dnastack/client/datasources/client.py,sha256=dR4y3SiCfu8pAtAIoC5S3kgmx3uRk_rEyphll4wvx6E,4766
+dnastack/client/datasources/client.py,sha256=jfVzCSKuQJsggbvfJVbftYJ0hd6gAPsBZMgvINOgjRE,4671
 dnastack/client/datasources/model.py,sha256=dV9Sf05ivIq0ubwIIYK3kSv1xJ_TtjxvVp_ddI9aHEk,214
 dnastack/client/service_registry/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/client/service_registry/client.py,sha256=r7D8CnPJLbNkc03g2PYHt880Ba1oPW2d8B0ShP0p4Eo,1131
-dnastack/client/service_registry/factory.py,sha256=l_H4ipFzv9j6VkWoPtyHOHJvCCmS6ceVpazjD5qfXM0,10741
+dnastack/client/service_registry/factory.py,sha256=MKidmvDuIdnz9jsqm6yDjImldcNajKxopwmKFFCTN4U,10751
 dnastack/client/service_registry/helper.py,sha256=CxWsov0WCk5weYj-dYP4gE136nILQTyshYrJl2hpQRw,1326
 dnastack/client/service_registry/manager.py,sha256=o_Eqg1GRj8x2q-duWozVge8JRFXUEGhV5-jbkcATFw8,9311
 dnastack/client/service_registry/models.py,sha256=X0vf1sv1f5sZ_7wZMmynjPF57ZrKHZ8FDXV5iHxv7b4,1513
 dnastack/client/workbench/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-dnastack/client/workbench/base_client.py,sha256=3Efiu-r8YZwExUQV2W1rkRVD-I-h4y51eFKHBN5d5OY,6818
+dnastack/client/workbench/base_client.py,sha256=KlkSO1c32bKhojfco8NcVBVSY5x_PZACgPI9Q8c7sRE,6808
 dnastack/client/workbench/models.py,sha256=RBo7wmWMSDkgiFZHaWh2ehKeTM8ERywug1bMGKDOm0k,446
 dnastack/client/workbench/ewes/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/client/workbench/ewes/client.py,sha256=yIqjwyyY9q0NrxpTX6LrnlnjavHoa6Fo073O3Lokkaw,15637
@@ -137,7 +137,7 @@ dnastack/client/workbench/storage/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeR
 dnastack/client/workbench/storage/client.py,sha256=uMr0mtwMj07TKhS2_IHIKoF-JkrEUiFdGpijVHP-vb4,4080
 dnastack/client/workbench/storage/models.py,sha256=S5P1m-blJH5x4glmIcu1KTDoJEjt8Qfp-lEeBW9I7PI,2219
 dnastack/client/workbench/workbench_user_service/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-dnastack/client/workbench/workbench_user_service/client.py,sha256=HmfWvLlmUFn1QwjtQF_h-TFcsmQvlahJrZvTI5tl1Tw,1220
+dnastack/client/workbench/workbench_user_service/client.py,sha256=ZpMOFw5L3NxbC2WtKpH3OJ435zEjy0-m4p0WgzQEOB0,1219
 dnastack/client/workbench/workbench_user_service/models.py,sha256=P8WmocouYthi4gnHzNJT2F3iExWTt_2MUnskexN6Rxs,126
 dnastack/client/workbench/workflow/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/client/workbench/workflow/client.py,sha256=ZbQAzJ1DPoPcMGkJEKSyV37pEpSkphT_2WwFbHHkMbw,17872
@@ -148,10 +148,10 @@ dnastack/common/auth_manager.py,sha256=N5lVkM94KGSh8Lje6os9v6rQC082vVJiRwe33US51
 dnastack/common/class_decorator.py,sha256=vu-TytoFW06IZwuTl54oR-YKqftAPeyIGJeqSG3WvO4,2470
 dnastack/common/console.py,sha256=edvhWiXtPPXg508RCcfuWKElpLdRu2A9p1kLhdsTtSw,602
 dnastack/common/environments.py,sha256=VDSSxvtxd60IxAyjgwx9YJuAwWkorhnAMN-XaV087gw,2529
-dnastack/common/events.py,sha256=39rspchI-Db6fhAFYSbljNeUt2pGdw27j2d-_nxILTs,6515
+dnastack/common/events.py,sha256=EFw_jWc5ZTi_juSrInTT-vX-K0PcUSqefNYGA4-zp_U,6513
 dnastack/common/exceptions.py,sha256=YyeSFnZ5dIG_u9Jel2kBheWt6xe0eqRnpEAt4SbI3t0,571
-dnastack/common/json_argument_parser.py,sha256=JRVECCAgN6HGuA8s5W00DsFj09dZ2AMVb55Pj7IDF9Q,8292
-dnastack/common/logger.py,sha256=0bF4vx4h9Fu0kXiWygePTTaX_cES26BAMkehGp8dv9A,4699
+dnastack/common/json_argument_parser.py,sha256=wmwaUST-sDjvhtvwHMczF98zSmMzwlOi_xqwnwSwiDo,8451
+dnastack/common/logger.py,sha256=akw9djt2_cXP6hxZ2JHz00WPQuby6Vc-XbFrmzqNQxY,4709
 dnastack/common/memory_debugger.py,sha256=MM3pu95E9L5Q3KVza-G_UBnyy_ULoM2gdeAhY0C1Lb0,1200
 dnastack/common/model_mixin.py,sha256=UTWY9E7pZk5VPhx9TXvKmthXu9CQjurmp1HfvQVEYnw,396
 dnastack/common/parser.py,sha256=w5delfi3uTXYN3O-0xMEiWDGwZWRgpsv1tcZV57MKV4,5121
@@ -170,22 +170,22 @@ dnastack/context/manager.py,sha256=5rwQGmV4Em3RyJZNvVIgi8xc2ANfTIGP7v7a6gqowZU,1
 dnastack/context/models.py,sha256=1tVkBiQQf252VS5YmLqSNTt0McbitC3Oe2_C7dH-OQg,520
 dnastack/http/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/http/client_factory.py,sha256=HdRZpTEnFQcHEdVbdYl7AbCcRUv3K3kVyznIxEWIqvA,650
-dnastack/http/session.py,sha256=1jT4Q2M0hEC9gznDLDQIs3R_fUMli_Dh5QdNP1giC7E,15063
+dnastack/http/session.py,sha256=R-rsE_TTswlTTlqJW7a6_O-sVMmbrnEMnKBf7m_5I8U,15058
 dnastack/http/session_info.py,sha256=ae9MnzMxOoPanGrxec5oIlnv2cizx5bT_h0wclHkAJg,9362
 dnastack/http/authenticators/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/http/authenticators/abstract.py,sha256=xaTA_3Wmc24x7tCvUcb5daUcC8sALMQoOx6iyTECZts,9241
 dnastack/http/authenticators/constants.py,sha256=mSpBnm5lMMmMJwr13KIfCoOXXJLP4qGDkFprYXALu8o,1278
 dnastack/http/authenticators/factory.py,sha256=PZhE7c59rDtmtUx3PcX_NzarSeRpoPCD6oexDE6Z05I,2062
-dnastack/http/authenticators/oauth2.py,sha256=8dQ6zsxbBuydqxqM2HS3A3R_y8jN5YNAU-udZ_MGULQ,17032
+dnastack/http/authenticators/oauth2.py,sha256=GxS7ynHHH-76RUbxZqdqb9qagJavvLWPwfOEiQf51Nk,17030
 dnastack/http/authenticators/oauth2_adapter/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dnastack/http/authenticators/oauth2_adapter/abstract.py,sha256=Tm4Nnroo5_vp0UgZHhcEDVRRbhIrvVdfPr8nTyihoH4,2832
-dnastack/http/authenticators/oauth2_adapter/client_credential.py,sha256=cCVZa4B1yUvF_395reEXK2tOc_ADbDHc-auhVT5pD9I,2518
-dnastack/http/authenticators/oauth2_adapter/device_code_flow.py,sha256=_OMHPf7qekPn_oSCBb41iYg9100sQMVzfJiKZHdh26w,6529
+dnastack/http/authenticators/oauth2_adapter/client_credential.py,sha256=Lu22mTT1kjnfLbRPjNVoJ95vySK9G9FItlrnn1g4xgE,2516
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 dnastack/http/authenticators/oauth2_adapter/factory.py,sha256=r8K6swt5zhraP74KhTL2K4sQ71HWAMLM0oHg8qQT4BA,965
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