dls-dodal 1.29.4__py3-none-any.whl → 1.30.0__py3-none-any.whl

{dls_dodal-1.29.4.dist-info → dls_dodal-1.30.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dls-dodal
-Version: 1.29.4
+Version: 1.30.0
 Summary: Ophyd devices and other utils that could be used across DLS beamlines
 Author-email: Dominic Oram <dominic.oram@diamond.ac.uk>
 License: Apache License
@@ -210,8 +210,9 @@ Classifier: Development Status :: 3 - Alpha
 Classifier: License :: OSI Approved :: Apache Software License
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
 Requires-Python: >=3.10
-Description-Content-Type: text/x-rst
+Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: click
 Requires-Dist: ophyd
@@ -220,7 +221,7 @@ Requires-Dist: bluesky
 Requires-Dist: pyepics
 Requires-Dist: dataclasses-json
 Requires-Dist: pillow
-Requires-Dist: zocalo >=0.32.0
+Requires-Dist: zocalo <1.0.0,>=0.32.0
 Requires-Dist: requests
 Requires-Dist: graypy
 Requires-Dist: pydantic
@@ -230,18 +231,23 @@ Requires-Dist: p4p
 Requires-Dist: numpy <2.0
 Requires-Dist: aiofiles
 Requires-Dist: aiohttp
+Requires-Dist: redis
 Provides-Extra: dev
+Requires-Dist: black ; extra == 'dev'
+Requires-Dist: diff-cover ; extra == 'dev'
 Requires-Dist: mypy ; extra == 'dev'
-Requires-Dist: mockito ; extra == 'dev'
+Requires-Dist: myst-parser ; extra == 'dev'
 Requires-Dist: pipdeptree ; extra == 'dev'
 Requires-Dist: pre-commit ; extra == 'dev'
 Requires-Dist: psutil ; extra == 'dev'
 Requires-Dist: pydata-sphinx-theme >=0.12 ; extra == 'dev'
+Requires-Dist: pyright ; extra == 'dev'
 Requires-Dist: pytest ; extra == 'dev'
 Requires-Dist: pytest-asyncio ; extra == 'dev'
 Requires-Dist: pytest-cov ; extra == 'dev'
 Requires-Dist: pytest-random-order ; extra == 'dev'
 Requires-Dist: ruff ; extra == 'dev'
+Requires-Dist: sphinx <7.4.6 ; extra == 'dev'
 Requires-Dist: sphinx-autobuild ; extra == 'dev'
 Requires-Dist: sphinx-copybutton ; extra == 'dev'
 Requires-Dist: sphinxcontrib-mermaid ; extra == 'dev'
@@ -253,64 +259,43 @@ Requires-Dist: types-mock ; extra == 'dev'
 Requires-Dist: types-PyYAML ; extra == 'dev'
 Requires-Dist: types-aiofiles ; extra == 'dev'
 
-dodal
-============
-
-|code_ci| |docs_ci| |coverage| |pypi_version| |license|
+[![CI](https://github.com/DiamondLightSource/dodal/actions/workflows/ci.yml/badge.svg)](https://github.com/DiamondLightSource/dodal/actions/workflows/ci.yml)
+[![Coverage](https://codecov.io/gh/DiamondLightSource/dodal/branch/main/graph/badge.svg)](https://codecov.io/gh/DiamondLightSource/dodal)
+[![PyPI](https://img.shields.io/pypi/v/dls-dodal.svg)](https://pypi.org/project/dls-dodal)
+[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
 
+# dodal
 
 Ophyd devices and other utils that could be used across DLS beamlines
 
-============== ==============================================================
-PyPI           ``pip install dls-dodal``
-Source code    https://github.com/DiamondLightSource/dodal
-Documentation  https://DiamondLightSource.github.io/dodal
-Releases       https://github.com/DiamondLightSource/dodal/releases
-============== ==============================================================
+Source          | <https://github.com/DiamondLightSource/dodal>
+:---:           | :---:
+PyPI            | `pip install dls-dodal`
+Documentation   | <https://diamondlightsource.github.io/dodal>
+Releases        | <https://github.com/DiamondLightSource/dodal/releases>
 
 Testing Connectivity
 --------------------
 
 You can test your connection to a beamline if it's PVs are visible to your machine with:
 
-.. code:: shell
 
+```
     # On any workstation:
     dodal connect <BEAMLINE>
 
     # On a beamline workstation, this should suffice:
     dodal connect ${BEAMLINE}
+```
 
 
-For more options, including a list of valid beamlines, type
 
-.. code:: shell
+For more options, including a list of valid beamlines, type
 
+```
     dodal connect --help
+```
 
+<!-- README only content. Anything below this line won't be included in index.md -->
 
-.. |code_ci| image:: https://github.com/DiamondLightSource/dodal/actions/workflows/code.yml/badge.svg?branch=main
-    :target: https://github.com/DiamondLightSource/dodal/actions/workflows/code.yml
-    :alt: Code CI
-
-.. |docs_ci| image:: https://github.com/DiamondLightSource/dodal/actions/workflows/docs.yml/badge.svg?branch=main
-    :target: https://github.com/DiamondLightSource/dodal/actions/workflows/docs.yml
-    :alt: Docs CI
-
-.. |coverage| image:: https://codecov.io/gh/DiamondLightSource/dodal/branch/main/graph/badge.svg
-    :target: https://codecov.io/gh/DiamondLightSource/dodal
-    :alt: Test Coverage
-
-.. |pypi_version| image:: https://img.shields.io/pypi/v/dls-dodal.svg
-    :target: https://pypi.org/project/dls-dodal
-    :alt: Latest PyPI version
-
-.. |license| image:: https://img.shields.io/badge/License-Apache%202.0-blue.svg
-    :target: https://opensource.org/licenses/Apache-2.0
-    :alt: Apache License
-
-..
-    Anything below this line is used when viewing README.rst and will be replaced
-    when included in index.rst
-
-See https://DiamondLightSource.github.io/dodal for more detailed documentation.
+See https://diamondlightsource.github.io/dodal for more detailed documentation.

dls_dodal-1.30.0.dist-info/RECORD

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+dodal/devices/util/motor_utils.py,sha256=pNY-aUk9LxaIWeDr5rpMS6udiB9j19wcCXkNDLp1uA0,257
+dodal/devices/util/save_panda.py,sha256=7hoR3pRrnDaouRzkq4Dk-KcTg5oGtqObfjnH-8VZQc4,2531
+dodal/devices/util/test_utils.py,sha256=MiXb-tJciL5tk0FvF2hiAqPM_32I69wqi6gVpLXNx6I,563
+dodal/devices/xspress3/xspress3.py,sha256=29elzI3JtceryKeMWXhcP9nWl0tlSdnTZhltCitet6A,4668
+dodal/devices/xspress3/xspress3_channel.py,sha256=yJRwseLmtkW2Vv6GB8sLdOFuBn3e4c9Q8fgPacMgl5w,1638
+dodal/devices/zocalo/__init__.py,sha256=oPhjFB39yf2NWkGD-MMcPFnnOVZ_RtdyBt2OLYn-Xa4,505
+dodal/devices/zocalo/zocalo_interaction.py,sha256=cc-OwjNsh9oMpMghceVWKW9gym_TFmP-mOYBd3H1H7Q,3379
+dodal/devices/zocalo/zocalo_results.py,sha256=O97H-ZX2qtzSHXpxCesOt9Ghb0K_JNjddDw8KC5R4Go,9911
+dodal/parameters/experiment_parameter_base.py,sha256=O7JamfuJ5cYHkPf9tsHJPqn-OMHTAGouigvM1cDFehE,313
+dodal/plans/check_topup.py,sha256=Pj6Eu8fa6nvoW4awrMxvzE_ftpLfYz8bN0QDLRw0Yuk,2989
+dodal/plans/data_session_metadata.py,sha256=TolX_js4mfO_oT3ee9RaB4AyAv8vO-Un9p0ej7cyB80,1695
+dodal/plans/motor_util_plans.py,sha256=pOiytk5L85z7jAcCt7uJ-_XuqnIFCs4ENp6TictQy_I,4523
+dls_dodal-1.30.0.dist-info/LICENSE,sha256=tAkwu8-AdEyGxGoSvJ2gVmQdcicWw3j1ZZueVV74M-E,11357
+dls_dodal-1.30.0.dist-info/METADATA,sha256=XR1WeLos79yzY6LsNxDD_v2IcOACDZaF885uhbyTSIw,16548
+dls_dodal-1.30.0.dist-info/WHEEL,sha256=nCVcAvsfA9TDtwGwhYaRrlPhTLV9m-Ga6mdyDtuwK18,91
+dls_dodal-1.30.0.dist-info/entry_points.txt,sha256=bycw_EKUzup_rxfCetOwcauXV4kLln_OPpPT8jEnr-I,94
+dls_dodal-1.30.0.dist-info/top_level.txt,sha256=xIozdmZk_wmMV4wugpq9-6eZs0vgADNUKz3j2UAwlhc,6
+dls_dodal-1.30.0.dist-info/RECORD,,

{dls_dodal-1.29.4.dist-info → dls_dodal-1.30.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (71.0.3)
+Generator: setuptools (73.0.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

dls_dodal-1.30.0.dist-info/entry_points.txt

@@ -0,0 +1,3 @@
+[console_scripts]
+dodal = dodal.__main__:main
+save-panda = dodal.devices.util.save_panda:main

dodal/__init__.py

@@ -1,6 +1,3 @@
-from importlib.metadata import version
-
-__version__ = version("dls-dodal")
-del version
+from ._version import __version__
 
 __all__ = ["__version__"]

dodal/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '1.29.4'
-__version_tuple__ = version_tuple = (1, 29, 4)
+__version__ = version = '1.30.0'
+__version_tuple__ = version_tuple = (1, 30, 0)

dodal/beamlines/__init__.py

@@ -1,7 +1,7 @@
 import importlib.util
+from collections.abc import Iterable, Mapping
 from functools import lru_cache
 from pathlib import Path
-from typing import Iterable, Mapping
 
 # Where beamline names (per the ${BEAMLINE} environment variable don't always
 # match up, we have to map between them bidirectionally). The most common use case is
@@ -10,6 +10,7 @@ from typing import Iterable, Mapping
 # dictionary, which maps ${BEAMLINE} to dodal.beamlines.<MODULE NAME>
 _BEAMLINE_NAME_OVERRIDES = {
     "i04-1": "i04_1",
+    "i13-1": "i13_1",
     "i20-1": "i20_1",
     "s03": "i03",
 }
@@ -27,6 +28,7 @@ def all_beamline_modules() -> Iterable[str]:
     # premature importing
     spec = importlib.util.find_spec(__name__)
     if spec is not None:
+        assert spec.submodule_search_locations
         search_paths = [Path(path) for path in spec.submodule_search_locations]
         for path in search_paths:
             for subpath in path.glob("**/*"):

dodal/beamlines/i03.py

@@ -1,5 +1,6 @@
 from ophyd_async.panda import HDFPanda
 
+from dodal.common.beamlines.beamline_parameters import get_beamline_parameters
 from dodal.common.beamlines.beamline_utils import (
     device_instantiation,
     get_directory_provider,
@@ -7,9 +8,14 @@ from dodal.common.beamlines.beamline_utils import (
 )
 from dodal.common.beamlines.beamline_utils import set_beamline as set_utils_beamline
 from dodal.common.udc_directory_provider import PandASubdirectoryProvider
-from dodal.devices.aperturescatterguard import AperturePositions, ApertureScatterguard
+from dodal.devices.aperturescatterguard import (
+    ApertureScatterguard,
+    load_positions_from_beamline_parameters,
+    load_tolerances_from_beamline_params,
+)
 from dodal.devices.attenuator import Attenuator
 from dodal.devices.backlight import Backlight
+from dodal.devices.cryostream import CryoStream
 from dodal.devices.dcm import DCM
 from dodal.devices.detector import DetectorParams
 from dodal.devices.detector.detector_motion import DetectorMotion
@@ -20,7 +26,6 @@ from dodal.devices.focusing_mirror import FocusingMirrorWithStripes, VFMMirrorVo
 from dodal.devices.motors import XYZPositioner
 from dodal.devices.oav.oav_detector import OAV, OAVConfigParams
 from dodal.devices.oav.pin_image_recognition import PinTipDetection
-from dodal.devices.qbpm1 import QBPM1
 from dodal.devices.robot import BartRobot
 from dodal.devices.s4_slit_gaps import S4SlitGaps
 from dodal.devices.smargon import Smargon
@@ -53,24 +58,20 @@ set_directory_provider(PandASubdirectoryProvider())
 def aperture_scatterguard(
     wait_for_connection: bool = True,
     fake_with_ophyd_sim: bool = False,
-    aperture_positions: AperturePositions | None = None,
 ) -> ApertureScatterguard:
     """Get the i03 aperture and scatterguard device, instantiate it if it hasn't already
     been. If this is called when already instantiated in i03, it will return the existing
-    object. If aperture_positions is specified, it will update them.
+    object.
     """
-
-    def load_positions(a_s: ApertureScatterguard):
-        if aperture_positions is not None:
-            a_s.load_aperture_positions(aperture_positions)
-
+    params = get_beamline_parameters()
     return device_instantiation(
         device_factory=ApertureScatterguard,
         name="aperture_scatterguard",
         prefix="",
         wait=wait_for_connection,
         fake=fake_with_ophyd_sim,
-        post_create=load_positions,
+        loaded_positions=load_positions_from_beamline_parameters(params),
+        tolerances=load_tolerances_from_beamline_params(params),
     )
 
 
@@ -102,17 +103,6 @@ def dcm(wait_for_connection: bool = True, fake_with_ophyd_sim: bool = False) ->
     )
 
 
-@skip_device(lambda: BL == "s03")
-def qbpm1(wait_for_connection: bool = True, fake_with_ophyd_sim: bool = False) -> QBPM1:
-    return device_instantiation(
-        device_factory=QBPM1,
-        name="qbpm1",
-        prefix="",
-        wait=wait_for_connection,
-        fake=fake_with_ophyd_sim,
-    )
-
-
 @skip_device(lambda: BL == "s03")
 def vfm(
     wait_for_connection: bool = True, fake_with_ophyd_sim: bool = False
@@ -498,7 +488,7 @@ def thawer(
     )
 
 
-def lower_gonio_positioner(
+def lower_gonio(
     wait_for_connection: bool = True, fake_with_ophyd_sim: bool = False
 ) -> XYZPositioner:
     """Get the i03 lower gonio device, instantiate it if it hasn't already been.
@@ -506,8 +496,23 @@ def lower_gonio_positioner(
     """
     return device_instantiation(
         XYZPositioner,
-        "lower_gonio_positioner",
+        "lower_gonio",
         "-MO-GONP-01:",
         wait_for_connection,
         fake_with_ophyd_sim,
     )
+
+
+def cryo_stream(
+    wait_for_connection: bool = True, fake_with_ophyd_sim: bool = False
+) -> CryoStream:
+    """Get the i03 cryostream device, instantiate it if it hasn't already been.
+    If this is called when already instantiated in i03, it will return the existing object.
+    """
+    return device_instantiation(
+        CryoStream,
+        "cryo_stream",
+        "",
+        wait_for_connection,
+        fake_with_ophyd_sim,
+    )

dodal/beamlines/i04.py

@@ -1,6 +1,11 @@
+from dodal.common.beamlines.beamline_parameters import get_beamline_parameters
 from dodal.common.beamlines.beamline_utils import device_instantiation
 from dodal.common.beamlines.beamline_utils import set_beamline as set_utils_beamline
-from dodal.devices.aperturescatterguard import AperturePositions, ApertureScatterguard
+from dodal.devices.aperturescatterguard import (
+    ApertureScatterguard,
+    load_positions_from_beamline_parameters,
+    load_tolerances_from_beamline_params,
+)
 from dodal.devices.attenuator import Attenuator
 from dodal.devices.backlight import Backlight
 from dodal.devices.beamstop import BeamStop
@@ -14,13 +19,14 @@ from dodal.devices.i04.transfocator import Transfocator
 from dodal.devices.ipin import IPin
 from dodal.devices.motors import XYZPositioner
 from dodal.devices.oav.oav_detector import OAV, OAVConfigParams
+from dodal.devices.oav.oav_to_redis_forwarder import OAVToRedisForwarder
 from dodal.devices.robot import BartRobot
 from dodal.devices.s4_slit_gaps import S4SlitGaps
 from dodal.devices.smargon import Smargon
 from dodal.devices.synchrotron import Synchrotron
 from dodal.devices.thawer import Thawer
 from dodal.devices.undulator import Undulator
-from dodal.devices.xbpm_feedback import XBPMFeedbackI04
+from dodal.devices.xbpm_feedback import XBPMFeedback
 from dodal.devices.zebra import Zebra
 from dodal.devices.zebra_controlled_shutter import ZebraShutter
 from dodal.log import set_beamline as set_log_beamline
@@ -32,6 +38,10 @@ ZOOM_PARAMS_FILE = (
 DISPLAY_CONFIG = "/dls_sw/i04/software/gda_versions/var/display.configuration"
 DAQ_CONFIGURATION_PATH = "/dls_sw/i04/software/daq_configuration"
 
+REDIS_HOST = "i04-control.diamond.ac.uk"
+REDIS_PASSWORD = "not_telling"
+MURKO_REDIS_DB = 7
+
 BL = get_beamline_name("s04")
 set_log_beamline(BL)
 set_utils_beamline(BL)
@@ -157,12 +167,12 @@ def transfocator(
 
 def xbpm_feedback(
     wait_for_connection: bool = True, fake_with_ophyd_sim: bool = False
-) -> XBPMFeedbackI04:
+) -> XBPMFeedback:
     """Get the i04 xbpm_feedback device, instantiate it if it hasn't already been.
     If this is called when already instantiated in i04, it will return the existing object.
     """
     return device_instantiation(
-        XBPMFeedbackI04,
+        XBPMFeedback,
         "xbpm_feedback",
         "",
         wait_for_connection,
@@ -214,24 +224,20 @@ def backlight(
 def aperture_scatterguard(
     wait_for_connection: bool = True,
     fake_with_ophyd_sim: bool = False,
-    aperture_positions: AperturePositions | None = None,
 ) -> ApertureScatterguard:
     """Get the i04 aperture and scatterguard device, instantiate it if it hasn't already
     been. If this is called when already instantiated in i04, it will return the existing
-    object. If aperture_positions is specified, it will update them.
+    object.
     """
-
-    def load_positions(a_s: ApertureScatterguard):
-        if aperture_positions is not None:
-            a_s.load_aperture_positions(aperture_positions)
-
+    params = get_beamline_parameters()
     return device_instantiation(
         device_factory=ApertureScatterguard,
         name="aperture_scatterguard",
         prefix="",
         wait=wait_for_connection,
         fake=fake_with_ophyd_sim,
-        post_create=load_positions,
+        loaded_positions=load_positions_from_beamline_parameters(params),
+        tolerances=load_tolerances_from_beamline_params(params),
     )
 
 
@@ -395,3 +401,19 @@ def robot(
         wait_for_connection,
         fake_with_ophyd_sim,
     )
+
+
+def oav_to_redis_forwarder(
+    wait_for_connection: bool = True, fake_with_ophyd_sim: bool = False
+) -> OAVToRedisForwarder:
+    """Get the i04 OAV to redis forwarder, instantiate it if it hasn't already been.
+    If this is called when already instantiated in i04, it will return the existing object.
+    """
+    return device_instantiation(
+        OAVToRedisForwarder,
+        "oav_to_redis",
+        "",
+        wait_for_connection,
+        fake_with_ophyd_sim,
+        params=OAVConfigParams(ZOOM_PARAMS_FILE, DISPLAY_CONFIG),
+    )

dodal/beamlines/i13_1.py

@@ -0,0 +1,66 @@
+from pathlib import Path
+
+from ophyd_async.epics.areadetector.aravis import AravisDetector
+
+from dodal.common.beamlines.beamline_utils import (
+    device_instantiation,
+    get_directory_provider,
+    set_directory_provider,
+)
+from dodal.common.beamlines.beamline_utils import set_beamline as set_utils_beamline
+from dodal.common.visit import StaticVisitDirectoryProvider
+from dodal.devices.motors import XYZPositioner
+from dodal.log import set_beamline as set_log_beamline
+from dodal.utils import get_beamline_name
+
+BL = get_beamline_name("i13-1")
+set_log_beamline(BL)
+set_utils_beamline(BL)
+set_directory_provider(
+    StaticVisitDirectoryProvider(
+        BL,
+        Path("/data/2024/cm37257-4/"),  # latest commissioning visit
+    )
+)
+
+
+def sample_xyz_stage(
+    wait_for_connection: bool = True, fake_with_ophyd_sim: bool = False
+) -> XYZPositioner:
+    return device_instantiation(
+        XYZPositioner,
+        prefix="BL13J-MO-PI-02:",
+        name="sample_xyz_stage",
+        wait=wait_for_connection,
+        fake=fake_with_ophyd_sim,
+        bl_prefix=False,
+    )
+
+
+def sample_xyz_lab_fa_stage(
+    wait_for_connection: bool = True, fake_with_ophyd_sim: bool = False
+) -> XYZPositioner:
+    return device_instantiation(
+        XYZPositioner,
+        prefix="BL13J-MO-PI-02:FIXANG:",
+        name="sample_xyz_lab_fa_stage",
+        wait=wait_for_connection,
+        fake=fake_with_ophyd_sim,
+        bl_prefix=False,
+    )
+
+
+def side_camera(
+    wait_for_connection: bool = True, fake_with_ophyd_sim: bool = False
+) -> AravisDetector:
+    return device_instantiation(
+        AravisDetector,
+        prefix="BL13J-OP-FLOAT-03:",
+        name="side_camera",
+        bl_prefix=False,
+        drv_suffix="CAM:",
+        hdf_suffix="HDF5:",
+        directory_provider=get_directory_provider(),
+        wait=wait_for_connection,
+        fake=fake_with_ophyd_sim,
+    )

dodal/beamlines/i22.py

@@ -234,7 +234,7 @@ def slits_3(
     )
 
 
-@skip_device
+@skip_device()
 def slits_4(
     wait_for_connection: bool = True,
     fake_with_ophyd_sim: bool = False,
@@ -300,7 +300,7 @@ def panda1(
     )
 
 
-@skip_device
+@skip_device()
 def panda2(
     wait_for_connection: bool = True,
     fake_with_ophyd_sim: bool = False,
@@ -315,7 +315,7 @@ def panda2(
     )
 
 
-@skip_device
+@skip_device()
 def panda3(
     wait_for_connection: bool = True,
     fake_with_ophyd_sim: bool = False,
@@ -330,7 +330,7 @@ def panda3(
     )
 
 
-@skip_device
+@skip_device()
 def panda4(
     wait_for_connection: bool = True,
     fake_with_ophyd_sim: bool = False,
@@ -366,7 +366,7 @@ def oav(
     )
 
 
-@skip_device
+@skip_device()
 def linkam(
     wait_for_connection: bool = True, fake_with_ophyd_sim: bool = False
 ) -> Linkam3:

dodal/beamlines/i24.py

@@ -7,7 +7,7 @@ from dodal.devices.i24.aperture import Aperture
 from dodal.devices.i24.beamstop import Beamstop
 from dodal.devices.i24.dcm import DCM
 from dodal.devices.i24.dual_backlight import DualBacklight
-from dodal.devices.i24.I24_detector_motion import DetectorMotion
+from dodal.devices.i24.i24_detector_motion import DetectorMotion
 from dodal.devices.i24.i24_vgonio import VGonio
 from dodal.devices.i24.pmac import PMAC
 from dodal.devices.oav.oav_detector import OAV