dkist-processing-visp 5.2.1__py3-none-any.whl → 5.2.3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- dkist_processing_visp/tasks/__init__.py +1 -0
- dkist_processing_visp/tasks/solar.py +3 -34
- dkist_processing_visp/tasks/wavelength_calibration.py +44 -3
- dkist_processing_visp/tests/conftest.py +10 -1
- dkist_processing_visp/tests/test_solar.py +0 -6
- dkist_processing_visp/tests/test_wavelength_calibration.py +0 -6
- dkist_processing_visp/workflows/l0_processing.py +1 -1
- dkist_processing_visp/workflows/trial_workflows.py +1 -1
- {dkist_processing_visp-5.2.1.dist-info → dkist_processing_visp-5.2.3.dist-info}/METADATA +16 -16
- {dkist_processing_visp-5.2.1.dist-info → dkist_processing_visp-5.2.3.dist-info}/RECORD +12 -12
- {dkist_processing_visp-5.2.1.dist-info → dkist_processing_visp-5.2.3.dist-info}/WHEEL +0 -0
- {dkist_processing_visp-5.2.1.dist-info → dkist_processing_visp-5.2.3.dist-info}/top_level.txt +0 -0
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@@ -12,4 +12,5 @@ from dkist_processing_visp.tasks.parse import *
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from dkist_processing_visp.tasks.quality_metrics import *
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from dkist_processing_visp.tasks.science import *
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from dkist_processing_visp.tasks.solar import *
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from dkist_processing_visp.tasks.wavelength_calibration import WavelengthCalibration
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from dkist_processing_visp.tasks.write_l1 import *
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@@ -46,6 +46,7 @@ from dkist_processing_visp.tasks.visp_base import VispTaskBase
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from dkist_processing_visp.tasks.wavelength_calibration import compute_initial_dispersion
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from dkist_processing_visp.tasks.wavelength_calibration import compute_input_wavelength_vector
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from dkist_processing_visp.tasks.wavelength_calibration import compute_order
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from dkist_processing_visp.tasks.wavelength_calibration import estimate_relative_continuum_level
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from dkist_processing_visp.tasks.wavelength_calibration import get_doppler_velocity
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__all__ = [
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@@ -638,11 +639,12 @@ class SolarCalibration(
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resolving_power = self.parameters.wavecal_init_resolving_power
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opacity_factor = self.parameters.wavecal_init_opacity_factor
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straylight_faction = self.parameters.wavecal_init_straylight_fraction
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relative_atlas_scaling =
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relative_atlas_scaling = estimate_relative_continuum_level(
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crval_init=crval_init,
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wavelength_range=wavelength_range,
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atlas=atlas,
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representative_spectrum=representative_spectrum,
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normalization_percentile=self.parameters.wavecal_init_crval_guess_normalization_percentile,
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)
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logger.info(f"0th order coefficient initial guess: {relative_atlas_scaling}")
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@@ -683,39 +685,6 @@ class SolarCalibration(
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return init_params
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def estimate_relative_continuum_level(
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self,
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*,
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crval_init: Quantity,
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wavelength_range: Quantity,
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atlas: Atlas,
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representative_spectrum: np.ndarray,
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) -> float:
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"""
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Estimate the multiplicative scaling between the representative spectrum and atlas solar transmission.
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This scaling is used to set the initial guess of 0th-order polynomial fit coefficient. We estimate the scaling
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factor by comparing the values of the two spectra at a given percent of the CDF. This percent is taken from
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the `~dkist_processing_visp.models.parameters.VispParameters.wavecal_init_crval_guess_normalization_percentile`
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pipeline parameter.
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"""
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wave_min = crval_init - wavelength_range / 2
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wave_max = crval_init + wavelength_range / 2
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atlas_idx = np.where(
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(atlas.solar_atlas_wavelength >= wave_min) & (atlas.solar_atlas_wavelength <= wave_max)
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)
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atlas_norm = np.nanpercentile(
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atlas.solar_atlas_transmission[atlas_idx],
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self.parameters.wavecal_init_crval_guess_normalization_percentile,
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)
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spec_norm = np.nanpercentile(
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representative_spectrum,
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self.parameters.wavecal_init_crval_guess_normalization_percentile,
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)
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return spec_norm / atlas_norm
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def compute_final_vignette_estimate(self, init_vignette_correction: np.ndarray) -> np.ndarray:
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"""
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Fit the spectral shape of continuum residuals for each spatial pixel.
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@@ -26,8 +26,6 @@ from sunpy.coordinates import HeliocentricInertial
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from dkist_processing_visp.models.tags import VispTag
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from dkist_processing_visp.tasks.visp_base import VispTaskBase
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__all__ = ["WavelengthCalibration"]
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class WavelengthCalibration(VispTaskBase, QualityMixin):
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"""Task class for correcting the dispersion axis wavelength values.
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@@ -125,6 +123,7 @@ class WavelengthCalibration(VispTaskBase, QualityMixin):
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negative_limit=-wavelength_range / 2,
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positive_limit=wavelength_range / 2,
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num_steps=550,
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normalization_percentile=self.parameters.wavecal_init_crval_guess_normalization_percentile,
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)
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logger.info(f"{crval_initial_guess = !s}")
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@@ -135,6 +134,15 @@ class WavelengthCalibration(VispTaskBase, QualityMixin):
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resolving_power = self.parameters.wavecal_init_resolving_power
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logger.info(f"{resolving_power = }")
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init_continuum_level = estimate_relative_continuum_level(
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crval_init=crval_initial_guess,
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wavelength_range=wavelength_range,
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atlas=atlas,
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representative_spectrum=input_spectrum,
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normalization_percentile=self.parameters.wavecal_init_crval_guess_normalization_percentile,
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)
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logger.info(f"{init_continuum_level = !s}")
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logger.info("Setting bounds")
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wavelength_search_width = dispersion * self.parameters.wavecal_crval_bounds_px
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bounds = BoundsModel(
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),
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opacity_factor=UnitlessBoundRange(min=0.0, max=10.0),
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straylight_fraction=UnitlessBoundRange(min=0.0, max=0.4),
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continuum_level=UnitlessBoundRange(
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continuum_level=UnitlessBoundRange(
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min=init_continuum_level * 0.7, max=init_continuum_level * 1.3
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),
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)
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fit_flags = FitFlagsModel(
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opacity_factor=self.parameters.wavecal_init_opacity_factor,
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straylight_fraction=self.parameters.wavecal_init_straylight_fraction,
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grating_constant=self.constants.grating_constant_inverse_mm,
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continuum_level=init_continuum_level,
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doppler_velocity=doppler_velocity,
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order=order,
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bounds=bounds,
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dispersion = pixel_pitch / linear_dispersion
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return dispersion.to(u.nm / u.pix)
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def estimate_relative_continuum_level(
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crval_init: Quantity,
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wavelength_range: Quantity,
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atlas: Atlas,
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representative_spectrum: np.ndarray,
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normalization_percentile: float,
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) -> float:
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"""
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This scaling is used to set the initial guess of 0th-order continuum scaling. We estimate the scaling factor by
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comparing the values of the two spectra at a given percent of the CDF. This percent is taken from the
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pipeline parameter.
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"""
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wave_min = crval_init - wavelength_range / 2
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wave_max = crval_init + wavelength_range / 2
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atlas_idx = np.where(
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(atlas.solar_atlas_wavelength >= wave_min) & (atlas.solar_atlas_wavelength <= wave_max)
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)
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atlas_norm = np.nanpercentile(
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atlas.solar_atlas_transmission[atlas_idx], normalization_percentile
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)
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spec_norm = np.nanpercentile(representative_spectrum, normalization_percentile)
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@@ -22,6 +22,8 @@ from dkist_processing_common.tasks import WorkflowTaskBase
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# Don't remove this; tests will break
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from dkist_processing_common.tests.mock_metadata_store import fake_gql_client
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from solar_wavelength_calibration import Atlas
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from solar_wavelength_calibration import DownloadConfig
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from dkist_processing_visp.models.constants import VispConstants
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from dkist_processing_visp.models.parameters import VispParameters
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visp_wavecal_pixel_pitch_micron_per_pix: float = 6.5
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visp_wavecal_atlas_download_config: dict[str, str] = field(
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default_factory=lambda: {
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"base_url": "https://g-a36282.cd214.a567.data.globus.org/atlas/",
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"telluric_reference_atlas_file_name": "telluric_reference_atlas.npy",
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"telluric_reference_atlas_hash_id": "md5:8db5e12508b293bca3495d81a0747447",
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"solar_reference_atlas_file_name": "solar_reference_atlas.npy",
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@pytest.fixture(scope="session")
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config = VispInputDatasetParameterValues().visp_wavecal_atlas_download_config
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l0_pipeline = Workflow(
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Version: 5.2.
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Version: 5.2.3
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Summary: Science processing code for the ViSP instrument on DKIST
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Author-email: NSO / AURA <dkistdc@nso.edu>
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License: BSD-3-Clause
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Requires-Dist: dkist-processing-common==11.9.
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Requires-Dist: dkist-processing-common==11.9.2
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Requires-Dist: asteval==1.0.8; extra == "frozen"
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Requires-Dist: astropy-iers-data==0.2025.12.
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Requires-Dist: astropy-iers-data==0.2025.12.22.0.40.30; extra == "frozen"
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dkist_processing_visp/tasks/wavelength_calibration.py,sha256=GLp24j4VfXnHdYmFO0Qd2mV-5hNolx6RQE4GwJo4gTk,18839
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dkist_processing_visp/tests/test_assemble_movie.py,sha256=T5EZzdB3sNY4HcSkN2W1ZBDaI4a68ZUNqPB-JpANSQ0,2247
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dkist_processing_visp/tests/test_assemble_quality.py,sha256=i2INzb73BM14A6VKD70eb5vaAv5_QjPy3VVVb4lonkc,4314
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dkist_processing_visp/tests/test_trial_create_quality_report.py,sha256=5LSvLiInp_ce_jObtBGNHQgVAkvJr9bYgY7IzIKrEuU,2799
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dkist_processing_visp/tests/test_write_l1.py,sha256=ZrAWhfx_HZi7dOBRc5YowvkKtMS8TBE_iud_KPjFI8g,6572
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dkist_processing_visp/tests/local_trial_workflows/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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