dkist-processing-vbi 1.25.1rc3__py3-none-any.whl → 1.25.3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- dkist_processing_vbi/models/fits_access.py +13 -0
- dkist_processing_vbi/parsers/spatial_step_pattern.py +2 -1
- dkist_processing_vbi/parsers/vbi_l0_fits_access.py +9 -5
- dkist_processing_vbi/parsers/vbi_l1_fits_access.py +4 -2
- dkist_processing_vbi/tasks/parse.py +5 -3
- dkist_processing_vbi/tasks/write_l1.py +11 -6
- dkist_processing_vbi/tests/test_fits_access.py +41 -0
- dkist_processing_vbi/tests/test_make_movie_frames.py +6 -4
- dkist_processing_vbi/tests/test_write_l1.py +19 -14
- {dkist_processing_vbi-1.25.1rc3.dist-info → dkist_processing_vbi-1.25.3.dist-info}/METADATA +69 -68
- {dkist_processing_vbi-1.25.1rc3.dist-info → dkist_processing_vbi-1.25.3.dist-info}/RECORD +13 -12
- changelog/155.misc.rst +0 -1
- {dkist_processing_vbi-1.25.1rc3.dist-info → dkist_processing_vbi-1.25.3.dist-info}/WHEEL +0 -0
- {dkist_processing_vbi-1.25.1rc3.dist-info → dkist_processing_vbi-1.25.3.dist-info}/top_level.txt +0 -0
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@@ -0,0 +1,13 @@
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"""VBI control of FITS key names and values."""
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from enum import StrEnum
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class VbiMetadataKey(StrEnum):
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"""Controlled list of names for FITS metadata header keys."""
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spatial_step_pattern = "VBISTPAT"
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number_of_spatial_steps = "VBINSTP"
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current_spatial_step = "VBISTP"
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number_of_exp_per_mosaic_step = "VBINFRAM"
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current_mosaic_step_exp = "VBICFRAM"
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@@ -4,6 +4,7 @@ from dkist_processing_common.models.task_name import TaskName
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from dkist_processing_common.parsers.unique_bud import TaskUniqueBud
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from dkist_processing_vbi.models.constants import VbiBudName
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from dkist_processing_vbi.models.fits_access import VbiMetadataKey
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class SpatialStepPatternBud(TaskUniqueBud):
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@@ -23,7 +24,7 @@ class SpatialStepPatternBud(TaskUniqueBud):
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def __init__(self):
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super().__init__(
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constant_name=VbiBudName.spatial_step_pattern.value,
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metadata_key=
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metadata_key=VbiMetadataKey.spatial_step_pattern,
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ip_task_types=TaskName.observe.value,
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)
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@@ -3,6 +3,8 @@
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from astropy.io import fits
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from dkist_processing_common.parsers.l0_fits_access import L0FitsAccess
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from dkist_processing_vbi.models.fits_access import VbiMetadataKey
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class VbiL0FitsAccess(L0FitsAccess):
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"""
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@@ -30,8 +32,10 @@ class VbiL0FitsAccess(L0FitsAccess):
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):
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super().__init__(hdu=hdu, name=name, auto_squeeze=auto_squeeze)
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self.spatial_step_pattern: str = self.header[
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self.number_of_spatial_steps: int = self.header.get(
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self.current_spatial_step: int = self.header.get(
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self.number_of_exp_per_mosaic_step: int = self.header.get(
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self.spatial_step_pattern: str = self.header[VbiMetadataKey.spatial_step_pattern]
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self.number_of_spatial_steps: int = self.header.get(VbiMetadataKey.number_of_spatial_steps)
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self.current_spatial_step: int = self.header.get(VbiMetadataKey.current_spatial_step)
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self.number_of_exp_per_mosaic_step: int = self.header.get(
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VbiMetadataKey.number_of_exp_per_mosaic_step
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)
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self.current_mosaic_step_exp: int = self.header.get(VbiMetadataKey.current_mosaic_step_exp)
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from astropy.io import fits
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from dkist_processing_common.parsers.l1_fits_access import L1FitsAccess
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from dkist_processing_vbi.models.fits_access import VbiMetadataKey
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class VbiL1FitsAccess(L1FitsAccess):
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"""
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):
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super().__init__(hdu=hdu, name=name, auto_squeeze=auto_squeeze)
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self.number_of_spatial_steps: int = self.header.get(
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self.current_spatial_step: int = self.header.get(
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self.number_of_spatial_steps: int = self.header.get(VbiMetadataKey.number_of_spatial_steps)
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self.current_spatial_step: int = self.header.get(VbiMetadataKey.current_spatial_step)
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"""VBI parse task."""
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from dkist_processing_common.models.fits_access import MetadataKey
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from dkist_processing_common.models.tags import StemName
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from dkist_processing_common.models.task_name import TaskName
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from dkist_processing_common.parsers.single_value_single_key_flower import (
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@@ -13,6 +14,7 @@ from dkist_processing_common.tasks import ParseL0InputDataBase
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from dkist_processing_common.tasks.parse_l0_input_data import S
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from dkist_processing_vbi.models.constants import VbiBudName
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from dkist_processing_vbi.models.fits_access import VbiMetadataKey
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from dkist_processing_vbi.models.tags import VbiStemName
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from dkist_processing_vbi.parsers.mosaic_repeats import MosaicRepeatNumberFlower
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from dkist_processing_vbi.parsers.mosaic_repeats import TotalMosaicRepeatsBud
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@@ -50,7 +52,7 @@ class ParseL0VbiInputData(ParseL0InputDataBase):
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return super().constant_buds + [
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UniqueBud(
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constant_name=VbiBudName.num_spatial_steps.value,
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metadata_key=
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metadata_key=VbiMetadataKey.number_of_spatial_steps,
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),
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SpatialStepPatternBud(),
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ObsIpStartTimeBud(),
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return super().tag_flowers + [
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SingleValueSingleKeyFlower(
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tag_stem_name=VbiStemName.current_spatial_step.value,
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metadata_key=
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metadata_key=VbiMetadataKey.current_spatial_step,
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),
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SingleValueSingleKeyFlower(
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tag_stem_name=StemName.task.value, metadata_key=
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tag_stem_name=StemName.task.value, metadata_key=MetadataKey.ip_task_type
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),
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MosaicRepeatNumberFlower(),
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ExposureTimeFlower(),
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from astropy.time import Time
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from astropy.time import TimeDelta
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from dkist_processing_common.models.constants import ConstantsBase
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from dkist_processing_common.models.fits_access import MetadataKey
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from dkist_processing_common.tasks.write_l1 import WavelengthRange
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from dkist_processing_common.tasks.write_l1 import WriteL1Frame
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from dkist_service_configuration.logging import logger
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__all__ = ["VbiWriteL1Frame"]
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from dkist_processing_vbi.models.fits_access import VbiMetadataKey
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class VbiWriteL1Frame(WriteL1Frame):
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"""
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# ---Temporal---
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if self.constants.num_mosaic_repeats > 1:
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num_exp_per_dsp = header[
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num_exp_per_dsp = header[VbiMetadataKey.number_of_exp_per_mosaic_step]
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header["DNAXIS3"] = self.constants.num_mosaic_repeats * num_exp_per_dsp
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header["DTYPE3"] = "TEMPORAL"
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header["DPNAME3"] = "time"
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header["DUNIT3"] = "s"
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# Temporal position in dataset
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current_mosaic_number = header["VBICMOSC"]
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current_exposure = header[
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current_exposure = header[VbiMetadataKey.current_mosaic_step_exp]
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header["DINDEX3"] = (current_mosaic_number - 1) * num_exp_per_dsp + current_exposure
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# ---Wavelength Info---
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header["WAVEREF"] = "Air"
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# --- Mosaic ---
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number_of_spatial_steps = int(header[
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current_step = int(header[
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number_of_spatial_steps = int(header[VbiMetadataKey.number_of_spatial_steps])
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current_step = int(header[VbiMetadataKey.current_spatial_step])
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if number_of_spatial_steps not in [1, 4, 5, 9]: # not a known number of spatial steps
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raise ValueError(
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f"Mosaic grid must be a known configuration (steps in 1, 4, 5, 9). "
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"""
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return (
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Time(header["DATE-BEG"], format="isot", precision=6)
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+ TimeDelta(
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+ TimeDelta(
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float(header[MetadataKey.sensor_readout_exposure_time_ms]) / 1000, format="sec"
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)
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).to_value("isot")
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def get_wavelength_range(self, header: fits.Header) -> WavelengthRange:
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Range is the wavelengths at the edges of the filter bandpass.
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"""
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vbi_filter = find_associated_filter(wavelength=header[
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vbi_filter = find_associated_filter(wavelength=header[MetadataKey.wavelength] * u.nm)
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return WavelengthRange(min=vbi_filter.min, max=vbi_filter.max)
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def get_waveband(self, wavelength: u.Quantity, wavelength_range: WavelengthRange) -> str:
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import pytest
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from astropy.io import fits
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from dkist_header_validator import spec122_validator
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from dkist_processing_vbi.models.fits_access import VbiMetadataKey
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from dkist_processing_vbi.parsers.vbi_l0_fits_access import VbiL0FitsAccess
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from dkist_processing_vbi.parsers.vbi_l1_fits_access import VbiL1FitsAccess
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from dkist_processing_vbi.tests.conftest import Vbi122ObserveFrames
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@pytest.fixture(scope="function")
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def header():
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ds = Vbi122ObserveFrames(array_shape=(1, 2, 2), num_steps=1)
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header_list = [
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spec122_validator.validate_and_translate_to_214_l0(d.header(), return_type=fits.HDUList)[
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].header
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for d in ds
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return header_list[0]
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def test_metadata_keys_in_access_bases(header):
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"""
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Given: the set of metadata key names in VbiMetadataKey
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When: the VBI FITS access classes define a set of new attributes
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Then: the sets are the same the attributes have the correct values
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"""
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vbi_metadata_key_names = {vmk.name for vmk in VbiMetadataKey}
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all_vbi_fits_access_attrs = set()
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for access_class in [VbiL0FitsAccess, VbiL1FitsAccess]:
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fits_obj = access_class.from_header(header)
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vbi_instance_attrs = set(vars(fits_obj).keys())
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parent_class = access_class.mro()[1]
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parent_fits_obj = parent_class.from_header(header)
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parent_instance_attrs = set(vars(parent_fits_obj).keys())
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vbi_fits_access_attrs = vbi_instance_attrs - parent_instance_attrs
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for attr in vbi_fits_access_attrs:
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assert getattr(fits_obj, attr) == fits_obj.header[VbiMetadataKey[attr]]
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all_vbi_fits_access_attrs |= vbi_fits_access_attrs
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assert vbi_metadata_key_names == all_vbi_fits_access_attrs
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from dkist_processing_common.codecs.fits import fits_array_decoder
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from dkist_processing_common.codecs.fits import fits_hdulist_encoder
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from dkist_processing_common.models.fits_access import FitsAccessBase
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from dkist_processing_common.models.fits_access import MetadataKey
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from dkist_processing_vbi.models.constants import VbiConstants
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from dkist_processing_vbi.models.fits_access import VbiMetadataKey
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from dkist_processing_vbi.models.tags import VbiTag
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from dkist_processing_vbi.parsers.vbi_l1_fits_access import VbiL1FitsAccess
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from dkist_processing_vbi.tasks.make_movie_frames import MakeVbiMovieFrames
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hdl[1].header["CDELT2"] = 1.0
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hdl[1].header["CRPIX1"] = (s % 2) * 7
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hdl[1].header["CRPIX2"] = -1 * ((s - 1) // 2 - 1) * 7
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hdl[1].header[
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hdl[1].header[MetadataKey.current_dsps_repeat] = m
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hdl[1].header["CRPIX1"] = (s % 2) * 7
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hdl[1].header["CRPIX2"] = -1 * ((s - 1) // 2 - 1) * 7
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hdl[1].header[
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hdl[1].header[MetadataKey.current_dsps_repeat] = m
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from dkist_header_validator import spec214_validator
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from dkist_processing_common.codecs.fits import fits_array_encoder
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from dkist_processing_common.models.fits_access import MetadataKey
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from dkist_processing_common.models.tags import Tag
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from dkist_processing_vbi.models.constants import VbiConstants
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from dkist_processing_vbi.models.fits_access import VbiMetadataKey
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from dkist_processing_vbi.tasks.write_l1 import VbiWriteL1Frame
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from dkist_processing_vbi.tests.conftest import Vbi122ObserveFrames
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from dkist_processing_vbi.tests.conftest import VbiConstantsDb
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@@ -34,25 +36,25 @@ def calibrated_header(is_mosaic: bool, camera_str: Literal["red", "blue", "red_a
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header["CUNIT3"] = "s"
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if is_mosaic:
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if camera_str == "blue":
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header[
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header[
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header[VbiMetadataKey.number_of_spatial_steps] = 9
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header[VbiMetadataKey.current_spatial_step] = 5
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elif camera_str == "red_all":
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header[
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header[
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header[VbiMetadataKey.number_of_spatial_steps] = 5
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header[VbiMetadataKey.current_spatial_step] = 5
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else:
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header[
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header[
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header[VbiMetadataKey.number_of_spatial_steps] = 4
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header[VbiMetadataKey.current_spatial_step] = 3
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else:
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header[
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header[
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header[
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header[
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header[
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header[VbiMetadataKey.number_of_spatial_steps] = 1
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header[VbiMetadataKey.current_spatial_step] = 1
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header[VbiMetadataKey.spatial_step_pattern] = "5"
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header[VbiMetadataKey.number_of_exp_per_mosaic_step] = 3
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header[VbiMetadataKey.current_mosaic_step_exp] = 2
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header["VBINMOSC"] = 3
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header["VBICMOSC"] = 2
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header[
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header[MetadataKey.current_dsps_repeat] = 1002 # To mimic a large offset
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header["DATE-BEG"] = "2025-07-11T00:00:00"
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header[
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header[MetadataKey.sensor_readout_exposure_time_ms] = 100
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return header
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@@ -141,7 +143,10 @@ def test_write_l1_frame(
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if num_mosaic_repeats > 1:
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assert header["DEAXES"] == 1
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-
assert
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assert (
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header["DNAXIS3"]
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== header[VbiMetadataKey.number_of_exp_per_mosaic_step] * header["VBINMOSC"]
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)
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assert header["DTYPE3"] == "TEMPORAL"
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assert header["DUNIT3"] == "s"
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assert header["DPNAME3"] == "time"
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.4
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Name: dkist-processing-vbi
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Version: 1.25.
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Version: 1.25.3
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Summary: Processing code for the VBI instrument on DKIST
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Author-email: NSO / AURA <dkistdc@nso.edu>
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License: BSD-3-Clause
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@@ -13,7 +13,7 @@ Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3.12
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dkist_processing_vbi-1.25.
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64
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-
dkist_processing_vbi-1.25.
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65
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-
dkist_processing_vbi-1.25.
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63
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+
dkist_processing_vbi-1.25.3.dist-info/METADATA,sha256=9gM6_F0N8VSJC69PBpBpWtxO-TuWAjJTPPsti1INPCo,28550
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64
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+
dkist_processing_vbi-1.25.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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65
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+
dkist_processing_vbi-1.25.3.dist-info/top_level.txt,sha256=0haPknO-Vs_9QzeelcUGELlVwvJ28UeH5uQnBF2w5nQ,45
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66
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dkist_processing_vbi-1.25.3.dist-info/RECORD,,
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changelog/155.misc.rst
DELETED
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1
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Update `dkist-processing-common` to v11.7.0, which makes constants for the dataset extras.
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{dkist_processing_vbi-1.25.1rc3.dist-info → dkist_processing_vbi-1.25.3.dist-info}/top_level.txt
RENAMED
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