dkist-processing-trend 0.1.0__py3-none-any.whl

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Files changed (66) hide show
  1. changelog/.gitempty +0 -0
  2. dkist_processing_trend/__init__.py +10 -0
  3. dkist_processing_trend/config.py +11 -0
  4. dkist_processing_trend/models/__init__.py +1 -0
  5. dkist_processing_trend/models/constants.py +143 -0
  6. dkist_processing_trend/models/fit_options.py +15 -0
  7. dkist_processing_trend/models/fits_access.py +65 -0
  8. dkist_processing_trend/models/instrument.py +35 -0
  9. dkist_processing_trend/models/instrument_options.py +35 -0
  10. dkist_processing_trend/models/parameters.py +134 -0
  11. dkist_processing_trend/models/tags.py +117 -0
  12. dkist_processing_trend/models/task_name.py +20 -0
  13. dkist_processing_trend/parsers/__init__.py +1 -0
  14. dkist_processing_trend/parsers/arm_id.py +103 -0
  15. dkist_processing_trend/parsers/instrument_unique_bud.py +40 -0
  16. dkist_processing_trend/parsers/time.py +27 -0
  17. dkist_processing_trend/parsers/trend_l0_fits_access.py +123 -0
  18. dkist_processing_trend/tasks/__init__.py +27 -0
  19. dkist_processing_trend/tasks/arm_task_factory.py +57 -0
  20. dkist_processing_trend/tasks/dark.py +56 -0
  21. dkist_processing_trend/tasks/gain.py +74 -0
  22. dkist_processing_trend/tasks/initialize_arm_tasks.py +50 -0
  23. dkist_processing_trend/tasks/parse.py +169 -0
  24. dkist_processing_trend/tasks/prepare_fit_data_base.py +257 -0
  25. dkist_processing_trend/tasks/run_pac_fitter.py +392 -0
  26. dkist_processing_trend/tasks/trend_base.py +97 -0
  27. dkist_processing_trend/tasks/trend_output_data.py +167 -0
  28. dkist_processing_trend/tasks/visp/__init__.py +6 -0
  29. dkist_processing_trend/tasks/visp/visp_dmpd.py +410 -0
  30. dkist_processing_trend/tasks/visp/visp_extract_beam.py +14 -0
  31. dkist_processing_trend/tasks/visp/visp_geometric.py +260 -0
  32. dkist_processing_trend/tasks/visp/visp_prep_fit_data.py +162 -0
  33. dkist_processing_trend/tasks/visp/visp_process_demod.py +236 -0
  34. dkist_processing_trend/tasks/write_trend.py +663 -0
  35. dkist_processing_trend/tests/__init__.py +1 -0
  36. dkist_processing_trend/tests/conftest.py +718 -0
  37. dkist_processing_trend/tests/local_trial_workflows/__init__.py +0 -0
  38. dkist_processing_trend/tests/local_trial_workflows/l0_to_trend_visp_polcal.py +294 -0
  39. dkist_processing_trend/tests/local_trial_workflows/local_trial_helpers.py +488 -0
  40. dkist_processing_trend/tests/test_arm_task_factory.py +82 -0
  41. dkist_processing_trend/tests/test_base_tasks.py +86 -0
  42. dkist_processing_trend/tests/test_constants.py +120 -0
  43. dkist_processing_trend/tests/test_dark.py +97 -0
  44. dkist_processing_trend/tests/test_gain.py +135 -0
  45. dkist_processing_trend/tests/test_parameters.py +149 -0
  46. dkist_processing_trend/tests/test_parse.py +276 -0
  47. dkist_processing_trend/tests/test_prep_fit_data_base.py +233 -0
  48. dkist_processing_trend/tests/test_publish_catalog_messages.py +45 -0
  49. dkist_processing_trend/tests/test_run_pac_fitter.py +371 -0
  50. dkist_processing_trend/tests/test_stems.py +75 -0
  51. dkist_processing_trend/tests/test_transfer_output_data.py +76 -0
  52. dkist_processing_trend/tests/test_trend_fits_access.py +173 -0
  53. dkist_processing_trend/tests/test_visp.py +874 -0
  54. dkist_processing_trend/tests/test_workflows.py +10 -0
  55. dkist_processing_trend/tests/test_write_trend.py +460 -0
  56. dkist_processing_trend/workflows/__init__.py +3 -0
  57. dkist_processing_trend/workflows/visp.py +58 -0
  58. dkist_processing_trend-0.1.0.dist-info/METADATA +549 -0
  59. dkist_processing_trend-0.1.0.dist-info/RECORD +66 -0
  60. dkist_processing_trend-0.1.0.dist-info/WHEEL +5 -0
  61. dkist_processing_trend-0.1.0.dist-info/top_level.txt +3 -0
  62. docs/conf.py +57 -0
  63. docs/index.rst +10 -0
  64. docs/l0_to_trend_visp_polcal.rst +4 -0
  65. docs/landing_page.rst +11 -0
  66. docs/requirements_table.rst +8 -0
@@ -0,0 +1,549 @@
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+ Metadata-Version: 2.4
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+ Name: dkist-processing-trend
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+ Version: 0.1.0
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+ Summary: Pipelines for DKIST polarimetric trend analysis
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+ Author-email: NSO / AURA <dkistdc@nso.edu>
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+ License: BSD-3-Clause
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+ Project-URL: Homepage, https://nso.edu/dkist/data-center/
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+ Project-URL: Repository, https://bitbucket.org/dkistdc/dkist-processing-trend/
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+ Classifier: Programming Language :: Python
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+ Classifier: Programming Language :: Python :: 3
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+ Classifier: Programming Language :: Python :: 3.13
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+ Requires-Python: >=3.13
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+ Description-Content-Type: text/x-rst
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+ Requires-Dist: python-dotenv==1.2.3; extra == "frozen"
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+ Requires-Dist: tifffile==2026.8.23; extra == "frozen"
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+ Requires-Dist: tinycss2==1.5.1; extra == "frozen"
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+ Requires-Dist: tornado==6.5.8; extra == "frozen"
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+ Requires-Dist: tqdm==4.70.0; extra == "frozen"
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+ Requires-Dist: traitlets==5.16.1; extra == "frozen"
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+ Requires-Dist: typing_extensions==4.16.0; extra == "frozen"
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+ Requires-Dist: tzdata==2026.3; extra == "frozen"
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+ Requires-Dist: tzlocal==5.4.4; extra == "frozen"
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+ Requires-Dist: uc-micro-py==2.0.0; extra == "frozen"
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+ Requires-Dist: uncertainties==3.2.3; extra == "frozen"
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+ Requires-Dist: universal_pathlib==0.3.10; extra == "frozen"
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+ Requires-Dist: uri-template==1.3.0; extra == "frozen"
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+ Requires-Dist: urllib3==2.7.0; extra == "frozen"
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+ Requires-Dist: uuid6==2025.0.1; extra == "frozen"
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+ Requires-Dist: uvicorn==0.52.4; extra == "frozen"
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+ Requires-Dist: uvloop==0.22.1; extra == "frozen"
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+ Requires-Dist: vine==5.1.0; extra == "frozen"
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+ Requires-Dist: voluptuous==0.16.0; extra == "frozen"
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+ Requires-Dist: watchfiles==1.2.0; extra == "frozen"
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+ Requires-Dist: wcwidth==0.8.2; extra == "frozen"
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+ Requires-Dist: webcolors==25.10.0; extra == "frozen"
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+ Requires-Dist: webencodings==0.6.1; extra == "frozen"
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+ Requires-Dist: websocket-client==1.9.0; extra == "frozen"
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+ Requires-Dist: websockets==17.1; extra == "frozen"
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+ Requires-Dist: wirerope==1.0.0; extra == "frozen"
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+ Requires-Dist: wrapt==2.3.0; extra == "frozen"
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+ Requires-Dist: yamale==6.1.0; extra == "frozen"
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+ Requires-Dist: yarl==1.24.5; extra == "frozen"
333
+ Requires-Dist: zipp==4.1.0; extra == "frozen"
334
+
335
+ dkist-processing-trend
336
+ ========================
337
+
338
+ Overview
339
+ --------
340
+ The dkist-processing-trend library contains the implementation of polarization trend analysis pipelines as a collection of the
341
+ `dkist-processing-core <https://pypi.org/project/dkist-processing-core/>`_ framework and
342
+ `dkist-processing-common <https://pypi.org/project/dkist-processing-common/>`_ Tasks.
343
+
344
+ The recommended project structure is to separate tasks and workflows into separate packages. Having the workflows
345
+ in their own package facilitates using the build_utils to test the integrity of those workflows in the unit test.
346
+
347
+ Environment Variables
348
+ ---------------------
349
+
350
+ .. list-table::
351
+ :widths: 10 90
352
+ :header-rows: 1
353
+
354
+ * - Variable
355
+ - Field Info
356
+ * - LOGURU_LEVEL
357
+ - annotation=str required=False default='INFO' alias_priority=2 validation_alias='LOGURU_LEVEL' description='Log level for the application'
358
+ * - MESH_CONFIG
359
+ - annotation=dict[str, MeshService] required=False default_factory=dict alias_priority=2 validation_alias='MESH_CONFIG' description='Service mesh configuration' examples=[{'upstream_service_name': {'mesh_address': 'localhost', 'mesh_port': 6742}}]
360
+ * - RETRY_CONFIG
361
+ - annotation=RetryConfig required=False default_factory=RetryConfig description='Retry configuration for the service'
362
+ * - OTEL_SERVICE_NAME
363
+ - annotation=str required=False default='unknown-service-name' alias_priority=2 validation_alias='OTEL_SERVICE_NAME' description='Service name for OpenTelemetry'
364
+ * - DKIST_SERVICE_VERSION
365
+ - annotation=str required=False default='unknown-service-version' alias_priority=2 validation_alias='DKIST_SERVICE_VERSION' description='Service version for OpenTelemetry'
366
+ * - NOMAD_ALLOC_ID
367
+ - annotation=str required=False default='unknown-allocation-id' alias_priority=2 validation_alias='NOMAD_ALLOC_ID' description='Nomad allocation ID for OpenTelemetry'
368
+ * - NOMAD_ALLOC_NAME
369
+ - annotation=str required=False default='unknown-allocation-name' alias='NOMAD_ALLOC_NAME' alias_priority=2 description='Allocation name for the deployed container the task is running on.'
370
+ * - NOMAD_GROUP_NAME
371
+ - annotation=str required=False default='unknown-allocation-group' alias='NOMAD_GROUP_NAME' alias_priority=2 description='Allocation group for the deployed container the task is running on'
372
+ * - OTEL_EXPORTER_OTLP_TRACES_INSECURE
373
+ - annotation=bool required=False default=True description='Use insecure connection for OTLP traces'
374
+ * - OTEL_EXPORTER_OTLP_METRICS_INSECURE
375
+ - annotation=bool required=False default=True description='Use insecure connection for OTLP metrics'
376
+ * - OTEL_EXPORTER_OTLP_TRACES_ENDPOINT
377
+ - annotation=Union[str, NoneType] required=False default=None description='OTLP traces endpoint. Overrides mesh configuration' examples=['localhost:4317']
378
+ * - OTEL_EXPORTER_OTLP_METRICS_ENDPOINT
379
+ - annotation=Union[str, NoneType] required=False default=None description='OTLP metrics endpoint. Overrides mesh configuration' examples=['localhost:4317']
380
+ * - OTEL_PYTHON_DISABLED_INSTRUMENTATIONS
381
+ - annotation=list[str] required=False default_factory=list description='List of instrumentations to disable. https://opentelemetry.io/docs/zero-code/python/configuration/' examples=[['pika', 'requests']]
382
+ * - OTEL_PYTHON_FASTAPI_EXCLUDED_URLS
383
+ - annotation=str required=False default='health' description='Comma separated list of URLs to exclude from OpenTelemetry instrumentation in FastAPI.' examples=['client/.*/info,healthcheck']
384
+ * - SYSTEM_METRIC_INSTRUMENTATION_CONFIG
385
+ - annotation=Union[dict[str, bool], NoneType] required=False default=None description='Configuration for system metric instrumentation. https://opentelemetry-python-contrib.readthedocs.io/en/latest/instrumentation/system_metrics/system_metrics.html' examples=[{'system.memory.usage': ['used', 'free', 'cached'], 'system.cpu.time': ['idle', 'user', 'system', 'irq'], 'system.network.io': ['transmit', 'receive'], 'process.runtime.memory': ['rss', 'vms'], 'process.runtime.cpu.time': ['user', 'system'], 'process.runtime.context_switches': ['involuntary', 'voluntary']}]
386
+ * - ISB_USERNAME
387
+ - annotation=str required=False default='guest' description='Username for the interservice-bus.'
388
+ * - ISB_PASSWORD
389
+ - annotation=str required=False default='guest' description='Password for the interservice-bus.'
390
+ * - ISB_EXCHANGE
391
+ - annotation=str required=False default='master.direct.x' description='Exchange for the interservice-bus.'
392
+ * - ISB_QUEUE_TYPE
393
+ - annotation=str required=False default='classic' description='Queue type for the interservice-bus.' examples=['quorum', 'classic']
394
+ * - BUILD_VERSION
395
+ - annotation=str required=False default='dev' description='Fallback build version for workflow tasks.'
396
+ * - PIP_TIMEOUT
397
+ - annotation=int required=False default=15 description='Timeout for pip installs in seconds.'
398
+ * - PIP_RETRIES
399
+ - annotation=int required=False default=5 description='Number of retries for pip installs.'
400
+ * - IS_NOTEBOOK_EXECUTION_ENVIRONMENT
401
+ - annotation=bool required=False default=False description='Indication of whether the code is running in a notebook execution environment.' examples=[True, False]
402
+ * - NOTEBOOK_SAVE_WAIT_ATTEMPTS
403
+ - annotation=int required=False default=120 description='Number of attempts to check for a saved notebook before raising an error.'
404
+ * - NOTEBOOK_SAVE_WAIT_DELAY
405
+ - annotation=int required=False default=1 description='Number of seconds to wait between notebook save checks.'
406
+ * - GQL_AUTH_TOKEN
407
+ - annotation=Union[str, NoneType] required=False default='dev' description='The auth token for the metadata-store-api.'
408
+ * - OBJECT_STORE_ACCESS_KEY
409
+ - annotation=Union[str, NoneType] required=False default=None description='The access key for the object store.'
410
+ * - OBJECT_STORE_SECRET_KEY
411
+ - annotation=Union[str, NoneType] required=False default=None description='The secret key for the object store.'
412
+ * - OBJECT_STORE_USE_SSL
413
+ - annotation=bool required=False default=False description='Whether to use SSL for the object store connection.'
414
+ * - MULTIPART_THRESHOLD
415
+ - annotation=Union[int, NoneType] required=False default=None description='Multipart threshold for the object store.'
416
+ * - S3_CLIENT_CONFIG
417
+ - annotation=Union[dict, NoneType] required=False default=None description='S3 client configuration for the object store.'
418
+ * - S3_UPLOAD_CONFIG
419
+ - annotation=Union[dict, NoneType] required=False default=None description='S3 upload configuration for the object store.'
420
+ * - S3_DOWNLOAD_CONFIG
421
+ - annotation=Union[dict, NoneType] required=False default=None description='S3 download configuration for the object store.'
422
+ * - GLOBUS_MAX_RETRIES
423
+ - annotation=int required=False default=5 description='Max retries for transient errors on calls to the globus api.'
424
+ * - GLOBUS_INBOUND_CLIENT_CREDENTIALS
425
+ - annotation=list[GlobusClientCredential] required=False default_factory=list description='Globus client credentials for inbound transfers.' examples=[[{'client_id': 'id1', 'client_secret': 'secret1'}, {'client_id': 'id2', 'client_secret': 'secret2'}]]
426
+ * - GLOBUS_OUTBOUND_CLIENT_CREDENTIALS
427
+ - annotation=list[GlobusClientCredential] required=False default_factory=list description='Globus client credentials for outbound transfers.' examples=[[{'client_id': 'id3', 'client_secret': 'secret3'}, {'client_id': 'id4', 'client_secret': 'secret4'}]]
428
+ * - OBJECT_STORE_ENDPOINT
429
+ - annotation=Union[str, NoneType] required=False default=None description='Object store Globus Endpoint ID.'
430
+ * - SCRATCH_ENDPOINT
431
+ - annotation=Union[str, NoneType] required=False default=None description='Scratch Globus Endpoint ID.'
432
+ * - SCRATCH_BASE_PATH
433
+ - annotation=str required=False default='scratch/' description='Base path for scratch storage.'
434
+ * - SCRATCH_INVENTORY_DB_COUNT
435
+ - annotation=int required=False default=16 description='Number of databases in the scratch inventory (redis).'
436
+ * - DOCS_BASE_URL
437
+ - annotation=str required=False default='my_test_url' description='Base URL for the documentation site.'
438
+ * - FTS_ATLAS_DATA_DIR
439
+ - annotation=Union[str, NoneType] required=False default=None description='Common cached directory for downloaded FTS Atlas.'
440
+
441
+ Development
442
+ -----------
443
+ .. code-block:: bash
444
+
445
+ git clone git@bitbucket.org:dkistdc/dkist-processing-trend.git
446
+ cd dkist-processing-trend
447
+ pre-commit install
448
+ pip install -e .[test]
449
+ pytest -v --cov dkist_processing_trend
450
+
451
+ Build
452
+ --------
453
+ Artifacts are built through Bitbucket Pipelines.
454
+
455
+ The pipeline can be used in other repos with a modification of the package and artifact locations
456
+ to use the names relevant to the target repo.
457
+
458
+ e.g. dkist-processing-test -> dkist-processing-vbi and dkist_processing_test -> dkist_processing_vbi
459
+
460
+ Deployment
461
+ ----------
462
+ Deployment is done with `turtlebot <https://bitbucket.org/dkistdc/turtlebot/src/main/>`_ and follows
463
+ the process detailed in `dkist-processing-core <https://pypi.org/project/dkist-processing-core/>`_
464
+
465
+ Additionally, when a new release is ready to be built the following steps need to be taken:
466
+
467
+ 1. Freezing Dependencies
468
+ #########################
469
+
470
+ A new "frozen" extra is generated by the `dkist-dev-tools <https://bitbucket.org/dkistdc/dkist-dev-tools/src/main/>`_
471
+ package. If you don't have `dkist-dev-tools` installed please follow the directions from that repo.
472
+
473
+ To freeze dependencies run
474
+
475
+ .. code-block:: bash
476
+
477
+ ddt freeze vX.Y.Z[rcK]
478
+
479
+ Where "vX.Y.Z[rcK]" is the version about to be released.
480
+
481
+ 2. Changelog
482
+ ############
483
+
484
+ When you make **any** change to this repository it **MUST** be accompanied by a changelog file.
485
+ The changelog for this repository uses the `towncrier <https://github.com/twisted/towncrier>`__ package.
486
+ Entries in the changelog for the next release are added as individual files (one per change) to the ``changelog/`` directory.
487
+
488
+ Writing a Changelog Entry
489
+ ^^^^^^^^^^^^^^^^^^^^^^^^^
490
+
491
+ A changelog entry accompanying a change should be added to the ``changelog/`` directory.
492
+ The name of a file in this directory follows a specific template::
493
+
494
+ <PULL REQUEST NUMBER>.<TYPE>[.<COUNTER>].rst
495
+
496
+ The fields have the following meanings:
497
+
498
+ * ``<PULL REQUEST NUMBER>``: This is the number of the pull request, so people can jump from the changelog entry to the diff on BitBucket.
499
+ * ``<TYPE>``: This is the type of the change and must be one of the values described below.
500
+ * ``<COUNTER>``: This is an optional field, if you make more than one change of the same type you can append a counter to the subsequent changes, i.e. ``100.bugfix.rst`` and ``100.bugfix.1.rst`` for two bugfix changes in the same PR.
501
+
502
+ The list of possible types is defined in the towncrier section of ``pyproject.toml``, the types are:
503
+
504
+ * ``feature``: This change is a new code feature.
505
+ * ``bugfix``: This is a change which fixes a bug.
506
+ * ``doc``: A documentation change.
507
+ * ``removal``: A deprecation or removal of public API.
508
+ * ``misc``: Any small change which doesn't fit anywhere else, such as a change to the package infrastructure.
509
+
510
+
511
+ Rendering the Changelog at Release Time
512
+ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
513
+
514
+ When you are about to tag a release first you must run ``towncrier`` to render the changelog.
515
+ The steps for this are as follows:
516
+
517
+ * Run `towncrier build --version vx.y.z` using the version number you want to tag.
518
+ * Agree to have towncrier remove the fragments.
519
+ * Add and commit your changes.
520
+ * Tag the release.
521
+
522
+ **NOTE:** If you forget to add a Changelog entry to a tagged release (either manually or automatically with ``towncrier``)
523
+ then the Bitbucket pipeline will fail. To be able to use the same tag you must delete it locally and on the remote branch:
524
+
525
+ .. code-block:: bash
526
+
527
+ # First, actually update the CHANGELOG and commit the update
528
+ git commit
529
+
530
+ # Delete tags
531
+ git tag -d vWHATEVER.THE.VERSION
532
+ git push --delete origin vWHATEVER.THE.VERSION
533
+
534
+ # Re-tag with the same version
535
+ git tag vWHATEVER.THE.VERSION
536
+ git push --tags origin main
537
+
538
+
539
+ 3. Tag and Push
540
+ ###############
541
+
542
+ Once all commits are in place add a git tag that will define the released version, then push the tags up to Bitbucket:
543
+
544
+ .. code-block:: bash
545
+
546
+ git tag vX.Y.Z[rcK]
547
+ git push --tags origin BRANCH
548
+
549
+ In the case of an rc, BRANCH will likely be your development branch. For full releases BRANCH should be "main".
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32
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33
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34
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35
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52
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53
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54
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+ docs/index.rst,sha256=7L1rcYIeNrXKl6AHp5aAn2wUd-pscBNvFOY0NQiZV1I,153
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@@ -0,0 +1,5 @@
1
+ Wheel-Version: 1.0
2
+ Generator: setuptools (84.0.0)
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+ Root-Is-Purelib: true
4
+ Tag: py3-none-any
5
+
@@ -0,0 +1,3 @@
1
+ changelog
2
+ dkist_processing_trend
3
+ docs