dkist-processing-test 1.21.3__py3-none-any.whl

dkist_processing_test/tests/test_workflows.py

@@ -0,0 +1,9 @@
+"""Test integrity of workflows."""
+from dkist_processing_core.build_utils import validate_workflows
+
+from dkist_processing_test import workflows
+
+
+def test_workflow_integrity():
+    """Validate workflow to ensure acyclic-ness and export compilation"""
+    validate_workflows(workflows)

dkist_processing_test/workflows/__init__.py

@@ -0,0 +1 @@
+from dkist_processing_test.config import dkist_processing_test_configurations

dkist_processing_test/workflows/common_tasks.py

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+"""
+Workflow which exercises the common tasks in an end to end scenario
+"""
+from dkist_processing_common.tasks import CreateTrialAsdf
+from dkist_processing_common.tasks import CreateTrialDatasetInventory
+from dkist_processing_common.tasks import CreateTrialQualityReport
+from dkist_processing_common.tasks import PublishCatalogAndQualityMessages
+from dkist_processing_common.tasks import QualityL1Metrics
+from dkist_processing_common.tasks import SubmitDatasetMetadata
+from dkist_processing_common.tasks import Teardown
+from dkist_processing_common.tasks import TransferL0Data
+from dkist_processing_common.tasks import TransferL1Data
+from dkist_processing_common.tasks import TrialTeardown
+from dkist_processing_core import Workflow
+
+from dkist_processing_test.tasks import AssembleTestMovie
+from dkist_processing_test.tasks import GenerateCalibratedData
+from dkist_processing_test.tasks import MakeTestMovieFrames
+from dkist_processing_test.tasks import ParseL0TestInputData
+from dkist_processing_test.tasks import TestAssembleQualityData
+from dkist_processing_test.tasks import TestQualityL0Metrics
+from dkist_processing_test.tasks import TransferTestTrialData
+from dkist_processing_test.tasks import WriteL1Data
+from dkist_processing_test.tasks.manual import ManualWithoutProvenance
+from dkist_processing_test.tasks.manual import ManualWithProvenance
+
+# TransferInputData Task
+transfer_input_data = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="transfer-input-data",
+    workflow_package=__package__,
+)
+transfer_input_data.add_node(task=TransferL0Data, upstreams=None)
+
+# ParseInputData Task
+parse_input_data = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="parse-input-data",
+    workflow_package=__package__,
+)
+parse_input_data.add_node(task=ParseL0TestInputData, upstreams=None)
+
+# L0Quality Task
+quality_l0_metrics = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="quality-l0-metrics",
+    workflow_package=__package__,
+)
+quality_l0_metrics.add_node(task=TestQualityL0Metrics, upstreams=None)
+
+# L1Quality Task
+quality_l1_metrics = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="quality-l1-metrics",
+    workflow_package=__package__,
+)
+quality_l1_metrics.add_node(task=QualityL1Metrics, upstreams=None)
+
+# TestAssembleQualityData Task
+quality_assemble_data = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="quality-assemble-data",
+    workflow_package=__package__,
+)
+quality_assemble_data.add_node(task=TestAssembleQualityData, upstreams=None)
+
+# GenerateL1CalibratedData Task
+generate_calibrated_data = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="generate-calibrated-data",
+    workflow_package=__package__,
+)
+generate_calibrated_data.add_node(task=GenerateCalibratedData, upstreams=None)
+
+# MakeTestMovieFrames task
+make_test_movie_frames = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="make-test-movie-frames",
+    workflow_package=__package__,
+)
+make_test_movie_frames.add_node(task=MakeTestMovieFrames, upstreams=None)
+
+# AssembleTestMovie Task
+assemble_test_movie = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="assemble-test-movie",
+    workflow_package=__package__,
+)
+assemble_test_movie.add_node(task=AssembleTestMovie, upstreams=None)
+
+# WriteL1 Task
+write_l1 = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="write-l1",
+    workflow_package=__package__,
+)
+write_l1.add_node(task=WriteL1Data, upstreams=None)
+
+# TransferOutputData Task
+transfer_output_data = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="transfer-output-data",
+    workflow_package=__package__,
+)
+transfer_output_data.add_node(task=TransferL1Data, upstreams=None)
+
+# TransferTrialData Task
+transfer_trial_data = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="transfer-trial-data",
+    workflow_package=__package__,
+)
+transfer_trial_data.add_node(task=TransferTestTrialData, upstreams=None)
+
+# SubmitDatasetMetadata Task
+submit_dataset_metadata = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="submit-dataset-metadata",
+    workflow_package=__package__,
+)
+submit_dataset_metadata.add_node(task=SubmitDatasetMetadata, upstreams=None)
+
+# PublishCatalogMessages Task
+publish_catalog_messages = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="publish-messages",
+    workflow_package=__package__,
+)
+publish_catalog_messages.add_node(task=PublishCatalogAndQualityMessages, upstreams=None)
+
+# Teardown Task
+teardown = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="teardown",
+    workflow_package=__package__,
+)
+teardown.add_node(task=Teardown, upstreams=None)
+
+# Trial Teardown Task
+trial_teardown = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="trial-teardown",
+    workflow_package=__package__,
+)
+trial_teardown.add_node(task=TrialTeardown, upstreams=None)
+
+# CreateTrialInventory Task
+create_trial_inventory = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="create-trial-inventory",
+    workflow_package=__package__,
+)
+create_trial_inventory.add_node(
+    task=CreateTrialDatasetInventory, upstreams=None, pip_extras=["inventory"]
+)
+
+# CreateTrialAsdf Task
+create_trial_asdf = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="create-trial-asdf",
+    workflow_package=__package__,
+)
+create_trial_asdf.add_node(task=CreateTrialAsdf, upstreams=None, pip_extras=["asdf"])
+
+# CreateTrialQualityReport Task
+create_trial_quality_report = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="create-trial-quality",
+    workflow_package=__package__,
+)
+create_trial_quality_report.add_node(
+    task=CreateTrialQualityReport, upstreams=None, pip_extras=["quality"]
+)
+
+
+# ManualWithProvenance Task
+manual_with_provenance = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="manual-with-provenance",
+    workflow_package=__package__,
+)
+manual_with_provenance.add_node(task=ManualWithProvenance, upstreams=None)
+
+
+# ManualWithoutProvenance Task
+manual_without_provenance = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="manual-without-provenance",
+    workflow_package=__package__,
+)
+manual_without_provenance.add_node(task=ManualWithoutProvenance, upstreams=None)

dkist_processing_test/workflows/end_to_end.py

@@ -0,0 +1,58 @@
+"""
+Workflow which exercises the common tasks in an end to end scenario
+"""
+from dkist_processing_common.tasks import PublishCatalogAndQualityMessages
+from dkist_processing_common.tasks import QualityL1Metrics
+from dkist_processing_common.tasks import SubmitDatasetMetadata
+from dkist_processing_common.tasks import Teardown
+from dkist_processing_common.tasks import TransferL0Data
+from dkist_processing_common.tasks import TransferL1Data
+from dkist_processing_core import ResourceQueue
+from dkist_processing_core import Workflow
+
+from dkist_processing_test.tasks import AssembleTestMovie
+from dkist_processing_test.tasks import GenerateCalibratedData
+from dkist_processing_test.tasks import MakeTestMovieFrames
+from dkist_processing_test.tasks import ParseL0TestInputData
+from dkist_processing_test.tasks import TestAssembleQualityData
+from dkist_processing_test.tasks import TestQualityL0Metrics
+from dkist_processing_test.tasks import WriteL1Data
+
+end_to_end = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="management-processes-e2e",
+    workflow_package=__package__,
+)
+end_to_end.add_node(task=TransferL0Data, upstreams=None)
+
+# Science flow
+end_to_end.add_node(task=ParseL0TestInputData, upstreams=TransferL0Data)
+end_to_end.add_node(
+    task=GenerateCalibratedData,
+    resource_queue=ResourceQueue.HIGH_MEMORY,
+    upstreams=ParseL0TestInputData,
+)
+end_to_end.add_node(task=WriteL1Data, upstreams=GenerateCalibratedData)
+
+# Movie flow
+end_to_end.add_node(task=MakeTestMovieFrames, upstreams=GenerateCalibratedData)
+end_to_end.add_node(task=AssembleTestMovie, upstreams=MakeTestMovieFrames)
+
+# Quality flow
+end_to_end.add_node(task=TestQualityL0Metrics, upstreams=ParseL0TestInputData)
+end_to_end.add_node(task=QualityL1Metrics, upstreams=GenerateCalibratedData)
+end_to_end.add_node(
+    task=TestAssembleQualityData, upstreams=[TestQualityL0Metrics, QualityL1Metrics]
+)
+
+# Output flow
+end_to_end.add_node(task=SubmitDatasetMetadata, upstreams=[WriteL1Data, TestAssembleQualityData])
+end_to_end.add_node(task=TransferL1Data, upstreams=[WriteL1Data, AssembleTestMovie])
+end_to_end.add_node(
+    task=PublishCatalogAndQualityMessages, upstreams=[TransferL1Data, SubmitDatasetMetadata]
+)
+
+# goodby
+end_to_end.add_node(task=Teardown, upstreams=PublishCatalogAndQualityMessages)

dkist_processing_test/workflows/exercise_numba.py

@@ -0,0 +1,13 @@
+# TransferInputData Task
+from dkist_processing_core import Workflow
+
+from dkist_processing_test.tasks import ExerciseNumba
+
+exercise_numba = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="exercise_numba",
+    workflow_package=__package__,
+)
+exercise_numba.add_node(task=ExerciseNumba, upstreams=None)

dkist_processing_test/workflows/fail.py

@@ -0,0 +1,16 @@
+"""
+Workflow which is designed to fail
+"""
+from dkist_processing_core import Workflow
+
+from dkist_processing_test.tasks import FailTask
+
+
+fail = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="fail",
+    workflow_package=__package__,
+)
+fail.add_node(task=FailTask, upstreams=None)

dkist_processing_test/workflows/noop.py

@@ -0,0 +1,28 @@
+"""
+Workflow which exercises the api's but doesn't perform an action
+"""
+from dkist_processing_core import Workflow
+
+from dkist_processing_test.tasks import NoOpTask
+from dkist_processing_test.tasks import NoOpTask2
+
+
+noop = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="noop",
+    workflow_package=__package__,
+)
+noop.add_node(task=NoOpTask, upstreams=None)
+
+
+noop_flow = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="noop-flow",
+    workflow_package=__package__,
+)
+noop_flow.add_node(task=NoOpTask, upstreams=None)
+noop_flow.add_node(task=NoOpTask2, upstreams=NoOpTask)

dkist_processing_test/workflows/resource_queue.py

@@ -0,0 +1,19 @@
+"""
+Workflow which exercises the api's but doesn't perform an action
+"""
+from dkist_processing_core import ResourceQueue
+from dkist_processing_core import Workflow
+
+from dkist_processing_test.tasks import HighMemoryTask
+
+
+high_memory_workflow = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="high_mem",
+    workflow_package=__package__,
+)
+high_memory_workflow.add_node(
+    task=HighMemoryTask, resource_queue=ResourceQueue.HIGH_MEMORY, upstreams=None
+)

dkist_processing_test/workflows/trial_end_to_end.py

@@ -0,0 +1,64 @@
+"""
+Workflow which exercises the common tasks end to end in a trial scenario
+"""
+from dkist_processing_common.tasks import CreateTrialAsdf
+from dkist_processing_common.tasks import CreateTrialDatasetInventory
+from dkist_processing_common.tasks import CreateTrialQualityReport
+from dkist_processing_common.tasks import QualityL1Metrics
+from dkist_processing_common.tasks import TransferL0Data
+from dkist_processing_common.tasks import TrialTeardown
+from dkist_processing_core import Workflow
+
+from dkist_processing_test.tasks import AssembleTestMovie
+from dkist_processing_test.tasks import GenerateCalibratedData
+from dkist_processing_test.tasks import MakeTestMovieFrames
+from dkist_processing_test.tasks import ParseL0TestInputData
+from dkist_processing_test.tasks import TestAssembleQualityData
+from dkist_processing_test.tasks import TestQualityL0Metrics
+from dkist_processing_test.tasks import TransferTestTrialData
+from dkist_processing_test.tasks import WriteL1Data
+
+trial = Workflow(
+    input_data="input",
+    output_data="output",
+    category="test",
+    detail="trial-e2e",
+    workflow_package=__package__,
+)
+
+trial.add_node(task=TransferL0Data, upstreams=None)
+
+# Science flow
+trial.add_node(task=ParseL0TestInputData, upstreams=TransferL0Data)
+trial.add_node(task=GenerateCalibratedData, upstreams=ParseL0TestInputData)
+trial.add_node(task=WriteL1Data, upstreams=GenerateCalibratedData)
+
+# Movie flow
+trial.add_node(task=MakeTestMovieFrames, upstreams=GenerateCalibratedData)
+trial.add_node(task=AssembleTestMovie, upstreams=MakeTestMovieFrames)
+
+# Quality flow
+trial.add_node(task=TestQualityL0Metrics, upstreams=ParseL0TestInputData)
+trial.add_node(task=QualityL1Metrics, upstreams=GenerateCalibratedData)
+trial.add_node(task=TestAssembleQualityData, upstreams=[TestQualityL0Metrics, QualityL1Metrics])
+
+# Trial data generation
+trial.add_node(task=CreateTrialDatasetInventory, upstreams=WriteL1Data, pip_extras=["inventory"])
+trial.add_node(task=CreateTrialAsdf, upstreams=WriteL1Data, pip_extras=["asdf"])
+trial.add_node(
+    task=CreateTrialQualityReport, upstreams=TestAssembleQualityData, pip_extras=["quality"]
+)
+
+# Output flow
+trial.add_node(
+    task=TransferTestTrialData,
+    upstreams=[
+        CreateTrialDatasetInventory,
+        CreateTrialAsdf,
+        CreateTrialQualityReport,
+        AssembleTestMovie,
+    ],
+)
+
+# goodby
+trial.add_node(task=TrialTeardown, upstreams=TransferTestTrialData)

dkist_processing_test-1.21.3.dist-info/METADATA

@@ -0,0 +1,79 @@
+Metadata-Version: 2.1
+Name: dkist-processing-test
+Version: 1.21.3
+Summary: Example instrument code used by the DKIST science data processing pipelines to test processing infrastructure
+Author-email: NSO / AURA <dkistdc@nso.edu>
+License: BSD-3-Clause
+Project-URL: Homepage, https://nso.edu/dkist/data-center/
+Project-URL: Repository, https://bitbucket.org/dkistdc/dkist-processing-test/
+Project-URL: Help, https://nso.atlassian.net/servicedesk/customer/portal/5
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.11
+Requires-Python: >=3.11
+Description-Content-Type: text/x-rst
+Requires-Dist: dkist-processing-common ==10.2.2
+Requires-Dist: dkist-header-validator ==5.1.1
+Requires-Dist: dkist-service-configuration ==2.2
+Requires-Dist: dkist-fits-specifications ==4.7.0
+Requires-Dist: numba ==0.59.1
+Requires-Dist: astropy ==6.1.0
+Requires-Dist: numpy ==1.26.4
+Requires-Dist: dkist-spectral-lines ==3.0.0
+Provides-Extra: asdf
+Requires-Dist: dkist-processing-common[asdf] ; extra == 'asdf'
+Requires-Dist: dkist-inventory[asdf] ==1.4.0 ; extra == 'asdf'
+Provides-Extra: inventory
+Requires-Dist: dkist-processing-common[inventory] ; extra == 'inventory'
+Requires-Dist: dkist-inventory ==1.4.0 ; extra == 'inventory'
+Provides-Extra: quality
+Requires-Dist: dkist-quality ==1.1.1 ; extra == 'quality'
+Provides-Extra: test
+Requires-Dist: pytest ; extra == 'test'
+Requires-Dist: pytest-xdist ; extra == 'test'
+Requires-Dist: pytest-cov ; extra == 'test'
+Requires-Dist: pytest-mock ; extra == 'test'
+Requires-Dist: dkist-data-simulator >=5.2.0 ; extra == 'test'
+Requires-Dist: dkist-processing-test[inventory] ; extra == 'test'
+Requires-Dist: dkist-processing-test[asdf] ; extra == 'test'
+Requires-Dist: dkist-processing-test[quality] ; extra == 'test'
+
+dkist-processing-test
+---------------------
+
+Overview
+--------
+The dkist-processing-test library serves as an example implementation of a Tasks and Workflows using the
+`dkist-processing-core <https://pypi.org/project/dkist-processing-core/>`_ framework and
+`dkist-processing-common <https://pypi.org/project/dkist-processing-common/>`_ Tasks.
+
+The recommended project structure is to separate tasks and workflows into separate packages.
+
+Build
+-----
+Artifacts are built through `bitbucket pipelines <bitbucket-pipelines.yml>`_
+
+The pipeline can be used in other repos with a modification of the package and artifact locations
+to use the names relevant to the target repo.
+
+e.g. dkist-processing-test -> dkist-processing-vbi and dkist_processing_test -> dkist_processing_vbi
+
+Deployment
+----------
+Deployment is done with `turtlebot <https://bitbucket.org/dkistdc/turtlebot/src/master/>`_ and follows
+the process detailed in `dkist-processing-core <https://pypi.org/project/dkist-processing-core/>`_
+
+Environment Variables
+---------------------
+Only those specified by `dkist-processing-core <https://pypi.org/project/dkist-processing-core/>`_ and `dkist-processing-common <https://pypi.org/project/dkist-processing-common/>`_
+
+Development
+-----------
+
+.. code-block:: bash
+
+    git clone git@bitbucket.org:dkistdc/dkist-processing-test.git
+    cd dkist-processing-test
+    pre-commit install
+    pip install -e .[test]
+    pytest -v --cov dkist_processing_test

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dkist_processing_test-1.21.3.dist-info/WHEEL

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+Generator: setuptools (75.1.0)
+Root-Is-Purelib: true
+Tag: py3-none-any
+

dkist_processing_test-1.21.3.dist-info/top_level.txt

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+dkist_processing_test