dkist-processing-common 11.2.1rc2__py3-none-any.whl → 11.3.0__py3-none-any.whl

dkist_processing_common/tasks/trial_output_data.py

@@ -1,4 +1,5 @@
 """Tasks to support transferring an arbitrary collection of files to a customizable post-run location."""
+
 import logging
 from functools import cached_property
 from pathlib import Path

dkist_processing_common/tasks/write_l1.py

@@ -1,4 +1,5 @@
 """Task(s) for writing level 1 data as 214 compliant fits files."""
+
 import importlib
 import logging
 import uuid
@@ -213,11 +214,6 @@ class WriteL1Frame(WorkflowTaskBase, MetadataStoreMixin, ABC):
         header["OBS_HDU"] = 1
         header["FILENAME"] = self.l1_filename(header=header, stokes=stokes)
         header["STOKES"] = stokes
-        # Cadence keywords
-        header["CADENCE"] = self.constants.average_cadence
-        header["CADMIN"] = self.constants.minimum_cadence
-        header["CADMAX"] = self.constants.maximum_cadence
-        header["CADVAR"] = self.constants.variance_cadence
         # Keywords to support reprocessing
         if parameters := self.metadata_store_input_dataset_parameters:
             header["IDSPARID"] = parameters.inputDatasetPartId
@@ -232,6 +228,19 @@ class WriteL1Frame(WorkflowTaskBase, MetadataStoreMixin, ABC):
         header["PRODUCT"] = self.compute_product_id(header["IDSOBSID"], header["PROCTYPE"])
         return header
 
+    def add_timing_headers(self, header: fits.Header) -> fits.Header:
+        """
+        Add timing headers to the FITS header.
+
+        This method adds or updates headers related to frame timings.
+        """
+        # Cadence keywords
+        header["CADENCE"] = self.constants.average_cadence
+        header["CADMIN"] = self.constants.minimum_cadence
+        header["CADMAX"] = self.constants.maximum_cadence
+        header["CADVAR"] = self.constants.variance_cadence
+        return header
+
     def add_spectral_line_headers(
         self,
         header: fits.Header,
@@ -370,6 +379,8 @@ class WriteL1Frame(WorkflowTaskBase, MetadataStoreMixin, ABC):
         header = self.add_doc_headers(header=header)
         # Add the dataset headers (abstract - implement in instrument task)
         header = self.add_dataset_headers(header=header, stokes=stokes_param)
+        # Add the timing headers
+        header = self.add_timing_headers(header=header)
         # Add the spectral line headers
         header = self.add_spectral_line_headers(header=header)
         # Remove any headers not contained in spec 214
@@ -414,9 +425,9 @@ class WriteL1Frame(WorkflowTaskBase, MetadataStoreMixin, ABC):
         inst_name = self.constants.instrument.lower()
         calvers = self.version_from_module_name()
         header["CALVERS"] = calvers
-        header[
-            "CAL_URL"
-        ] = f"{self.docs_base_url}/projects/{inst_name}/en/v{calvers}/{self.workflow_name}.html"
+        header["CAL_URL"] = (
+            f"{self.docs_base_url}/projects/{inst_name}/en/v{calvers}/{self.workflow_name}.html"
+        )
         return header
 
     def version_from_module_name(self) -> str:

dkist_processing_common/tests/conftest.py

@@ -1,6 +1,7 @@
 """
 Global test fixtures
 """
+
 import json
 from collections import defaultdict
 from copy import deepcopy

dkist_processing_common/tests/mock_metadata_store.py

@@ -1,6 +1,7 @@
 """
 Support functions and constants for customized FakeGQLClient
 """
+
 import json
 from abc import ABC
 from abc import abstractmethod
@@ -22,7 +23,6 @@ from dkist_processing_common.models.graphql import RecipeRunProvenanceResponse
 from dkist_processing_common.models.graphql import RecipeRunResponse
 from dkist_processing_common.models.graphql import RecipeRunStatusResponse
 
-
 TILE_SIZE = 64
 
 default_observe_frames_doc = [
@@ -223,8 +223,7 @@ def fake_gql_client_factory(response_mapping_override: ResponseMapping | None =
             raise ValueError(f"Mocked response not found for {query_base=}, {query_response_cls=}")
 
         @staticmethod
-        def execute_gql_mutation(**kwargs):
-            ...
+        def execute_gql_mutation(**kwargs): ...
 
     return FakeGQLClientClass
 

dkist_processing_common/tests/test_codecs.py

@@ -20,8 +20,8 @@ from astropy.io.fits import HDUList
 from astropy.io.fits import Header
 from astropy.io.fits import PrimaryHDU
 from pydantic import BaseModel
-from pydantic import create_model
 from pydantic import Field
+from pydantic import create_model
 
 from dkist_processing_common.codecs.asdf import asdf_decoder
 from dkist_processing_common.codecs.asdf import asdf_encoder
@@ -39,10 +39,10 @@ from dkist_processing_common.codecs.iobase import iobase_decoder
 from dkist_processing_common.codecs.iobase import iobase_encoder
 from dkist_processing_common.codecs.json import json_decoder
 from dkist_processing_common.codecs.json import json_encoder
+from dkist_processing_common.codecs.quality import QualityDataEncoder
 from dkist_processing_common.codecs.quality import quality_data_decoder
 from dkist_processing_common.codecs.quality import quality_data_encoder
 from dkist_processing_common.codecs.quality import quality_data_hook
-from dkist_processing_common.codecs.quality import QualityDataEncoder
 from dkist_processing_common.codecs.str import str_decoder
 from dkist_processing_common.codecs.str import str_encoder
 from dkist_processing_common.models.fits_access import FitsAccessBase

dkist_processing_common/tests/test_interservice_bus.py

@@ -1,4 +1,5 @@
 """Tests for the interservice bus mixin for a WorkflowDataTaskBase subclass"""
+
 from typing import Type
 from uuid import uuid4
 

dkist_processing_common/tests/test_interservice_bus_mixin.py

@@ -1,4 +1,5 @@
 """Tests for the interservice bus mixin for a WorkflowDataTaskBase subclass"""
+
 import logging
 from typing import Dict
 from typing import Type

dkist_processing_common/tests/test_manual_processing.py

@@ -7,8 +7,7 @@ from dkist_processing_common.tasks import WorkflowTaskBase
 class ProvenanceTask(WorkflowTaskBase):
     record_provenance = True
 
-    def run(self):
-        ...
+    def run(self): ...
 
 
 @pytest.fixture(scope="function")

dkist_processing_common/tests/test_output_data_base.py

@@ -10,8 +10,7 @@ from dkist_processing_common.tasks.output_data_base import TransferDataBase
 
 
 class OutputDataBaseTask(OutputDataBase):
-    def run(self) -> None:
-        ...
+    def run(self) -> None: ...
 
 
 @pytest.fixture

dkist_processing_common/tests/test_parameters.py

@@ -7,6 +7,7 @@ HOW TO WRITE TESTS FOR NEW PARAMETER SUBCLASSES :
 4. Add a `pytest.param` with this helper function to `test_parameters` to make sure none of the default stuff broke
 5. Write a new test that only uses the helper function to test the new functionality.
 """
+
 import json
 from datetime import datetime
 from datetime import timedelta
@@ -27,7 +28,6 @@ from dkist_processing_common.models.tags import Tag
 from dkist_processing_common.tasks import WorkflowTaskBase
 from dkist_processing_common.tests.test_input_dataset import input_dataset_frames_part_factory
 
-
 FITS_FILE = "fits.dat"
 NP_FILE = "np.npy"
 

dkist_processing_common/tests/test_parse_l0_input_data.py

@@ -1,4 +1,5 @@
 """Tests for the parse L0 input data task"""
+
 import numpy as np
 import pytest
 from astropy.io import fits

dkist_processing_common/tests/test_quality.py

@@ -1,4 +1,5 @@
 """Tests for the quality tasks."""
+
 import json
 from typing import Iterable
 

dkist_processing_common/tests/test_quality_mixin.py

@@ -1339,9 +1339,16 @@ def test_build_wavecal_results(quality_task, wavecal_data_json):
         "Best Fit Atlas": [[1001.5, 1002.6, 1003.7, 1004.8], [1.0, 1.0, 0.4, 1.0]],
     }
     assert fit_plot["plot_kwargs"] == {
-        "Input Spectrum": {"ls": "-", "alpha": 0.4, "ms": 0, "color": "#1E317A"},
-        "Best Fit Observations": {"ls": "-", "lw": 4, "alpha": 0.8, "ms": 0, "color": "#FAA61C"},
-        "Best Fit Atlas": {"color": "k", "ls": "-", "ms": 0},
+        "Input Spectrum": {"ls": "-", "alpha": 0.4, "ms": 0, "color": "#1E317A", "zorder": 2.1},
+        "Best Fit Observations": {
+            "ls": "-",
+            "lw": 4,
+            "alpha": 0.8,
+            "ms": 0,
+            "color": "#FAA61C",
+            "zorder": 2.0,
+        },
+        "Best Fit Atlas": {"color": "k", "ls": "-", "ms": 0, "zorder": 2.2},
     }
 
     residuals_plot = plot_list[1]

dkist_processing_common/tests/test_scratch.py

@@ -1,14 +1,15 @@
 """
 Tests for the workflow file system wrapper
 """
+
 from pathlib import Path
 from typing import Callable
 from uuid import uuid4
 
 import pytest
 
-from dkist_processing_common._util.scratch import _flatten_list
 from dkist_processing_common._util.scratch import WorkflowFileSystem
+from dkist_processing_common._util.scratch import _flatten_list
 
 
 @pytest.fixture(

dkist_processing_common/tests/test_stems.py

@@ -21,9 +21,9 @@ from dkist_processing_common.parsers.retarder import RetarderNameBud
 from dkist_processing_common.parsers.single_value_single_key_flower import (
     SingleValueSingleKeyFlower,
 )
-from dkist_processing_common.parsers.task import parse_header_ip_task_with_gains
 from dkist_processing_common.parsers.task import PolcalTaskFlower
 from dkist_processing_common.parsers.task import TaskTypeFlower
+from dkist_processing_common.parsers.task import parse_header_ip_task_with_gains
 from dkist_processing_common.parsers.time import AverageCadenceBud
 from dkist_processing_common.parsers.time import ExposureTimeFlower
 from dkist_processing_common.parsers.time import MaximumCadenceBud

dkist_processing_common/tests/test_tags.py

@@ -1,6 +1,7 @@
 """
 Tests for the tag cloud manager
 """
+
 import random
 from typing import Callable
 from uuid import uuid4

dkist_processing_common/tests/test_teardown.py

@@ -7,9 +7,9 @@ from dkist_processing_common._util.scratch import WorkflowFileSystem
 from dkist_processing_common.codecs.str import str_encoder
 from dkist_processing_common.models.tags import Tag
 from dkist_processing_common.tasks.teardown import Teardown
+from dkist_processing_common.tests.mock_metadata_store import RecipeRunResponseMapping
 from dkist_processing_common.tests.mock_metadata_store import fake_gql_client_factory
 from dkist_processing_common.tests.mock_metadata_store import make_default_recipe_run_response
-from dkist_processing_common.tests.mock_metadata_store import RecipeRunResponseMapping
 
 
 class TeardownTest(Teardown):

dkist_processing_common/tests/test_transfer_input_data.py

@@ -10,11 +10,11 @@ from dkist_processing_common.models.input_dataset import InputDatasetPartDocumen
 from dkist_processing_common.models.tags import Tag
 from dkist_processing_common.tasks import WorkflowTaskBase
 from dkist_processing_common.tasks.transfer_input_data import TransferL0Data
+from dkist_processing_common.tests.mock_metadata_store import InputDatasetRecipeRunResponseMapping
 from dkist_processing_common.tests.mock_metadata_store import default_calibration_frames_doc
 from dkist_processing_common.tests.mock_metadata_store import default_observe_frames_doc
 from dkist_processing_common.tests.mock_metadata_store import default_parameters_doc
 from dkist_processing_common.tests.mock_metadata_store import fake_gql_client_factory
-from dkist_processing_common.tests.mock_metadata_store import InputDatasetRecipeRunResponseMapping
 from dkist_processing_common.tests.mock_metadata_store import (
     make_default_input_dataset_recipe_run_response,
 )
@@ -60,8 +60,7 @@ def create_input_frames(
 
 
 class TransferL0DataTask(TransferL0Data):
-    def run(self) -> None:
-        ...
+    def run(self) -> None: ...
 
 
 @pytest.fixture

dkist_processing_common/tests/test_trial_catalog.py

@@ -1,4 +1,5 @@
 """Tests for the tasks.trial_catalog module."""
+
 from pathlib import Path
 from string import ascii_uppercase
 from uuid import uuid4

dkist_processing_common/tests/test_trial_output_data.py

@@ -10,9 +10,9 @@ from dkist_processing_common.models.graphql import RecipeRunConfiguration
 from dkist_processing_common.models.tags import Tag
 from dkist_processing_common.tasks.mixin.globus import GlobusTransferItem
 from dkist_processing_common.tasks.trial_output_data import TransferTrialData
+from dkist_processing_common.tests.mock_metadata_store import RecipeRunResponseMapping
 from dkist_processing_common.tests.mock_metadata_store import fake_gql_client_factory
 from dkist_processing_common.tests.mock_metadata_store import make_default_recipe_run_response
-from dkist_processing_common.tests.mock_metadata_store import RecipeRunResponseMapping
 
 
 @pytest.fixture

dkist_processing_common/tests/test_workflow_task_base.py

@@ -190,8 +190,7 @@ def test_dataset_id(workflow_data_task):
 class ProvenanceTask(WorkflowTaskBase):
     record_provenance = True
 
-    def run(self):
-        ...
+    def run(self): ...
 
     # Because I couldn't figure out how to mock the mixin
     def metadata_store_record_provenance(self, is_task_manual: bool, library_versions: str):

dkist_processing_common/tests/test_write_l1.py

@@ -21,14 +21,14 @@ from dkist_processing_common.models.graphql import RecipeRunProvenanceResponse
 from dkist_processing_common.models.tags import Tag
 from dkist_processing_common.models.wavelength import WavelengthRange
 from dkist_processing_common.tasks.write_l1 import WriteL1Frame
-from dkist_processing_common.tests.mock_metadata_store import fake_gql_client_factory
+from dkist_processing_common.tests.mock_metadata_store import TILE_SIZE
 from dkist_processing_common.tests.mock_metadata_store import InputDatasetRecipeRunResponseMapping
+from dkist_processing_common.tests.mock_metadata_store import RecipeRunResponseMapping
+from dkist_processing_common.tests.mock_metadata_store import fake_gql_client_factory
 from dkist_processing_common.tests.mock_metadata_store import (
     make_default_input_dataset_recipe_run_response,
 )
 from dkist_processing_common.tests.mock_metadata_store import make_default_recipe_run_response
-from dkist_processing_common.tests.mock_metadata_store import RecipeRunResponseMapping
-from dkist_processing_common.tests.mock_metadata_store import TILE_SIZE
 
 
 @pytest.fixture
@@ -273,13 +273,11 @@ def write_l1_task_with_empty_waveband(recipe_run_id, tmp_path, request):
     ],
 )
 def write_l1_task_no_data(request, recipe_run_id, tmp_path, complete_common_header):
-    with (
-        CompleteWriteL1Frame(
-            recipe_run_id=recipe_run_id,
-            workflow_name="workflow_name",
-            workflow_version="workflow_version",
-        ) as task
-    ):
+    with CompleteWriteL1Frame(
+        recipe_run_id=recipe_run_id,
+        workflow_name="workflow_name",
+        workflow_version="workflow_version",
+    ) as task:
         task.scratch = WorkflowFileSystem(recipe_run_id=recipe_run_id, scratch_base_path=tmp_path)
         header = complete_common_header
         header.pop("AO_LOCK", None)

{dkist_processing_common-11.2.1rc2.dist-info → dkist_processing_common-11.3.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: dkist-processing-common
-Version: 11.2.1rc2
+Version: 11.3.0
 Summary: Common task classes used by the DKIST science data processing pipelines
 Author-email: NSO / AURA <dkistdc@nso.edu>
 License: BSD-3-Clause
@@ -61,7 +61,7 @@ Requires-Dist: dkist-inventory<2.0,>=1.6.0; extra == "inventory"
 Provides-Extra: asdf
 Requires-Dist: dkist-inventory[asdf]<2.0,>=1.6.0; extra == "asdf"
 Provides-Extra: quality
-Requires-Dist: dkist-quality<3.0,>=2.0.0rc1; extra == "quality"
+Requires-Dist: dkist-quality<3.0,>=2.0.0; extra == "quality"
 
 dkist-processing-common
 =======================

dkist_processing_common-11.3.0.dist-info/RECORD

@@ -0,0 +1,122 @@
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docs/conf.py

@@ -1,4 +1,5 @@
 """Configuration file for the Sphinx documentation builder."""
+
 # -- stdlib imports ------------------------------------------------------------
 import importlib
 import sys

changelog/262.misc.rst

@@ -1 +0,0 @@
-Update database name for vertical multi-pane plot metric data. It's now called "multi_plot_data".