disdrodb 0.0.21__py3-none-any.whl → 0.1.1__py3-none-any.whl

disdrodb/l0/readers/EPFL/HYMEX_LTE_SOP2.py

@@ -1,127 +0,0 @@
-#!/usr/bin/env python3
-# -----------------------------------------------------------------------------.
-# Copyright (c) 2021-2023 DISDRODB developers
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <http://www.gnu.org/licenses/>.
-# -----------------------------------------------------------------------------.
-"""Reader for HYMEX SOP2 campaign."""
-from disdrodb.l0 import run_l0a
-from disdrodb.l0.l0_reader import is_documented_by, reader_generic_docstring
-
-
-@is_documented_by(reader_generic_docstring)
-def reader(
-    raw_dir,
-    processed_dir,
-    station_name,
-    # Processing options
-    force=False,
-    verbose=False,
-    parallel=False,
-    debugging_mode=False,
-):
-    ##------------------------------------------------------------------------.
-    #### - Define column names
-    column_names = [
-        "time",
-        "id",
-        "datalogger_temperature",
-        "datalogger_voltage",
-        "rainfall_rate_32bit",
-        "rainfall_accumulated_32bit",
-        "weather_code_synop_4680",
-        "weather_code_synop_4677",
-        "reflectivity_32bit",
-        "mor_visibility",
-        "laser_amplitude",
-        "number_particles",
-        "sensor_temperature",
-        "sensor_heating_current",
-        "sensor_battery_voltage",
-        "sensor_status",
-        "rainfall_amount_absolute_32bit",
-        "datalogger_debug",
-        "raw_drop_concentration",
-        "raw_drop_average_velocity",
-        "raw_drop_number",
-        "datalogger_error",
-    ]
-
-    ##------------------------------------------------------------------------.
-    #### - Define reader options
-    reader_kwargs = {}
-    # - Define delimiter
-    reader_kwargs["delimiter"] = ","
-    # - Avoid first column to become df index !!!
-    reader_kwargs["index_col"] = False
-    # - Define behaviour when encountering bad lines
-    reader_kwargs["on_bad_lines"] = "skip"
-    # - Define reader engine
-    #   - C engine is faster
-    #   - Python engine is more feature-complete
-    reader_kwargs["engine"] = "python"
-    # - Define on-the-fly decompression of on-disk data
-    #   - Available: gzip, bz2, zip
-    reader_kwargs["compression"] = "infer"
-    # - Strings to recognize as NA/NaN and replace with standard NA flags
-    #   - Already included: ‘#N/A’, ‘#N/A N/A’, ‘#NA’, ‘-1.#IND’, ‘-1.#QNAN’,
-    #                       ‘-NaN’, ‘-nan’, ‘1.#IND’, ‘1.#QNAN’, ‘<NA>’, ‘N/A’,
-    #                       ‘NA’, ‘NULL’, ‘NaN’, ‘n/a’, ‘nan’, ‘null’
-    reader_kwargs["na_values"] = ["na", "", "error", "-.-", " NA"]
-
-    ##------------------------------------------------------------------------.
-    #### - Define dataframe sanitizer function for L0 processing
-    def df_sanitizer_fun(df):
-        # Import dask or pandas
-        import pandas as pd
-
-        # - Convert time column to datetime
-        df["time"] = pd.to_datetime(df["time"], format="%Y-%m-%d %H:%M:%S", errors="coerce")
-
-        # - Drop rows when "raw_drop_number" is "NA"
-        # --> This is used to drop all rows where all values are "NA"
-        df = df.dropna(subset="raw_drop_number", axis=0)
-
-        # - Drop columns not agreeing with DISDRODB L0 standards
-        columns_to_drop = [
-            "datalogger_debug",
-            "datalogger_voltage",
-            "id",
-            "datalogger_temperature",
-            "datalogger_error",
-        ]
-        df = df.drop(columns=columns_to_drop)
-        return df
-
-    ##------------------------------------------------------------------------.
-    #### - Define glob pattern to search data files in <raw_dir>/data/<station_name>
-    glob_patterns = "*.dat*"
-
-    ####----------------------------------------------------------------------.
-    #### - Create L0A products
-    run_l0a(
-        raw_dir=raw_dir,
-        processed_dir=processed_dir,
-        station_name=station_name,
-        # Custom arguments of the reader for L0A processing
-        glob_patterns=glob_patterns,
-        column_names=column_names,
-        reader_kwargs=reader_kwargs,
-        df_sanitizer_fun=df_sanitizer_fun,
-        # Processing options
-        force=force,
-        verbose=verbose,
-        parallel=parallel,
-        debugging_mode=debugging_mode,
-    )

disdrodb/l0/readers/EPFL/HYMEX_LTE_SOP3.py

@@ -1,129 +0,0 @@
-#!/usr/bin/env python3
-# -----------------------------------------------------------------------------.
-# Copyright (c) 2021-2023 DISDRODB developers
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <http://www.gnu.org/licenses/>.
-# -----------------------------------------------------------------------------.
-"""Reader for HYMEX SOP3 campaign."""
-from disdrodb.l0 import run_l0a
-from disdrodb.l0.l0_reader import is_documented_by, reader_generic_docstring
-
-
-@is_documented_by(reader_generic_docstring)
-def reader(
-    raw_dir,
-    processed_dir,
-    station_name,
-    # Processing options
-    force=False,
-    verbose=False,
-    parallel=False,
-    debugging_mode=False,
-):
-    ##------------------------------------------------------------------------.
-    #### - Define column names
-    column_names = [
-        "time",
-        "id",
-        "datalogger_temperature",
-        "datalogger_voltage",
-        "rainfall_rate_32bit",
-        "rainfall_accumulated_32bit",
-        "weather_code_synop_4680",
-        "weather_code_synop_4677",
-        "reflectivity_32bit",
-        "mor_visibility",
-        "laser_amplitude",
-        "number_particles",
-        "sensor_temperature",
-        "sensor_heating_current",
-        "sensor_battery_voltage",
-        "sensor_status",
-        "rainfall_amount_absolute_32bit",
-        "datalogger_debug",
-        "raw_drop_concentration",
-        "raw_drop_average_velocity",
-        "raw_drop_number",
-        "datalogger_error",
-    ]
-
-    ##------------------------------------------------------------------------.
-    #### - Define reader options
-    reader_kwargs = {}
-    # - Define delimiter
-    reader_kwargs["delimiter"] = ","
-    # - Avoid first column to become df index !!!
-    reader_kwargs["index_col"] = False
-    # - Define behaviour when encountering bad lines
-    reader_kwargs["on_bad_lines"] = "skip"
-    # - Avoid UnicodeDecodeError: 'utf-8' codec can't decode byte ...
-    reader_kwargs["encoding"] = "latin-1"
-    # - Define reader engine
-    #   - C engine is faster
-    #   - Python engine is more feature-complete
-    reader_kwargs["engine"] = "python"
-    # - Define on-the-fly decompression of on-disk data
-    #   - Available: gzip, bz2, zip
-    reader_kwargs["compression"] = "infer"
-    # - Strings to recognize as NA/NaN and replace with standard NA flags
-    #   - Already included: ‘#N/A’, ‘#N/A N/A’, ‘#NA’, ‘-1.#IND’, ‘-1.#QNAN’,
-    #                       ‘-NaN’, ‘-nan’, ‘1.#IND’, ‘1.#QNAN’, ‘<NA>’, ‘N/A’,
-    #                       ‘NA’, ‘NULL’, ‘NaN’, ‘n/a’, ‘nan’, ‘null’
-    reader_kwargs["na_values"] = ["na", "", "error", "-.-", " NA"]
-
-    ##------------------------------------------------------------------------.
-    #### - Define dataframe sanitizer function for L0 processing
-    def df_sanitizer_fun(df):
-        # Import dask or pandas
-        import pandas as pd
-
-        # - Convert time column to datetime
-        df["time"] = pd.to_datetime(df["time"], format="%Y-%m-%d %H:%M:%S", errors="coerce")
-
-        # - Drop rows when "raw_drop_number" is "NA"
-        # --> This is used to drop all rows where all values are "NA"
-        df = df.dropna(subset="raw_drop_number", axis=0)
-
-        # - Drop columns not agreeing with DISDRODB L0 standards
-        columns_to_drop = [
-            "datalogger_debug",
-            "datalogger_voltage",
-            "id",
-            "datalogger_temperature",
-            "datalogger_error",
-        ]
-        df = df.drop(columns=columns_to_drop)
-        return df
-
-    ##------------------------------------------------------------------------.
-    #### - Define glob pattern to search data files in <raw_dir>/data/<station_name>
-    glob_patterns = "*.dat*"
-
-    ####----------------------------------------------------------------------.
-    #### - Create L0A products
-    run_l0a(
-        raw_dir=raw_dir,
-        processed_dir=processed_dir,
-        station_name=station_name,
-        # Custom arguments of the reader for L0A processing
-        glob_patterns=glob_patterns,
-        column_names=column_names,
-        reader_kwargs=reader_kwargs,
-        df_sanitizer_fun=df_sanitizer_fun,
-        # Processing options
-        force=force,
-        verbose=verbose,
-        parallel=parallel,
-        debugging_mode=debugging_mode,
-    )

disdrodb/l0/readers/EPFL/RACLETS_2019.py

@@ -1,158 +0,0 @@
-#!/usr/bin/env python3
-# -----------------------------------------------------------------------------.
-# Copyright (c) 2021-2023 DISDRODB developers
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <http://www.gnu.org/licenses/>.
-# -----------------------------------------------------------------------------.
-from disdrodb.l0 import run_l0a
-from disdrodb.l0.l0_reader import is_documented_by, reader_generic_docstring
-
-
-@is_documented_by(reader_generic_docstring)
-def reader(
-    raw_dir,
-    processed_dir,
-    station_name,
-    # Processing options
-    force=False,
-    verbose=False,
-    parallel=False,
-    debugging_mode=False,
-):
-    ##------------------------------------------------------------------------.
-    #### - Define column names
-    column_names = ["TO_BE_SPLITTED"]
-
-    ##------------------------------------------------------------------------.
-    #### - Define reader options
-    reader_kwargs = {}
-    # - Define delimiter
-    reader_kwargs["delimiter"] = ";"  # Used to not split anything !
-    # - Define encoding
-    reader_kwargs["encoding"] = "ISO-8859-1"
-    # Skip first row as columns names
-    reader_kwargs["header"] = None
-    # - Avoid first column to become df index !!!
-    reader_kwargs["index_col"] = False
-    # - Define behaviour when encountering bad lines
-    reader_kwargs["on_bad_lines"] = "skip"
-    # - Define reader engine
-    #   - C engine is faster
-    #   - Python engine is more feature-complete
-    reader_kwargs["engine"] = "python"
-    # - Define on-the-fly decompression of on-disk data
-    #   - Available: gzip, bz2, zip
-    reader_kwargs["compression"] = "gzip"
-    # - Strings to recognize as NA/NaN and replace with standard NA flags
-    #   - Already included: ‘#N/A’, ‘#N/A N/A’, ‘#NA’, ‘-1.#IND’, ‘-1.#QNAN’,
-    #                       ‘-NaN’, ‘-nan’, ‘1.#IND’, ‘1.#QNAN’, ‘<NA>’, ‘N/A’,
-    #                       ‘NA’, ‘NULL’, ‘NaN’, ‘n/a’, ‘nan’, ‘null’
-    reader_kwargs["na_values"] = [
-        "na",
-        "",
-        "error",
-    ]
-
-    ##------------------------------------------------------------------------.
-    #### - Define dataframe sanitizer function for L0 processing
-    def df_sanitizer_fun(df):
-        # - Import pandas
-        import pandas as pd
-
-        # - Drop row that contains errors
-        df = df[~df["TO_BE_SPLITTED"].str.contains("Error in data reading! 0")]
-
-        # - Check if file empty
-        if len(df.index) == 0:
-            raise ValueError("Error in all rows. The file has been skipped.")
-
-        # - Split the column
-        df = df["TO_BE_SPLITTED"].str.split(",", expand=True, n=1111)
-
-        # - Define auxiliary columns
-        column_names = [
-            "id",
-            "latitude",
-            "longitude",
-            "time",
-            "datalogger_temperature",
-            "datalogger_voltage",
-            "rainfall_rate_32bit",
-            "rainfall_accumulated_32bit",
-            "weather_code_synop_4680",
-            "weather_code_synop_4677",
-            "reflectivity_32bit",
-            "mor_visibility",
-            "laser_amplitude",
-            "number_particles",
-            "sensor_temperature",
-            "sensor_heating_current",
-            "sensor_battery_voltage",
-            "sensor_status",
-            "rainfall_amount_absolute_32bit",
-            "error_code",
-        ]
-        df_variables = df.iloc[:, 0:20]
-        df_variables.columns = column_names
-
-        # - Define raw fields
-        df_raw_drop_concentration = df.iloc[:, 20:52].agg(",".join, axis=1)
-        df_raw_drop_average_velocity = df.iloc[:, 53:85].agg(",".join, axis=1)
-        df_raw_drop_number = df.iloc[:, 86:1110].agg(",".join, axis=1)
-
-        # - Combine together
-        df = df_variables
-        df["raw_drop_concentration"] = df_raw_drop_concentration
-        df["raw_drop_average_velocity"] = df_raw_drop_average_velocity
-        df["raw_drop_number"] = df_raw_drop_number
-
-        # - Drop invalid rows
-        df = df.loc[df["id"].astype(str).str.len() < 10]
-
-        # - Drop columns not agreeing with DISDRODB L0 standards
-        columns_to_drop = [
-            "datalogger_temperature",
-            "datalogger_voltage",
-            "id",
-            "latitude",
-            "longitude",
-        ]
-        df = df.drop(columns=columns_to_drop)
-
-        # - Convert time column to datetime
-        df["time"] = pd.to_datetime(df["time"], format="%d-%m-%Y %H:%M:%S", errors="coerce")
-
-        return df
-
-    ##------------------------------------------------------------------------.
-    #### - Define glob pattern to search data files in <raw_dir>/data/<station_name>
-    glob_patterns = "*.dat.gz*"
-
-    ####----------------------------------------------------------------------.
-    #### - Create L0A products
-    run_l0a(
-        raw_dir=raw_dir,
-        processed_dir=processed_dir,
-        station_name=station_name,
-        # Custom arguments of the reader for L0A processing
-        glob_patterns=glob_patterns,
-        column_names=column_names,
-        reader_kwargs=reader_kwargs,
-        df_sanitizer_fun=df_sanitizer_fun,
-        # Processing options
-        force=force,
-        verbose=verbose,
-        parallel=parallel,
-        debugging_mode=debugging_mode,
-    )

disdrodb/l0/readers/EPFL/SAMOYLOV_2017.py

@@ -1,136 +0,0 @@
-#!/usr/bin/env python3
-# -----------------------------------------------------------------------------.
-# Copyright (c) 2021-2023 DISDRODB developers
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <http://www.gnu.org/licenses/>.
-# -----------------------------------------------------------------------------.
-from disdrodb.l0 import run_l0a
-from disdrodb.l0.l0_reader import is_documented_by, reader_generic_docstring
-
-
-@is_documented_by(reader_generic_docstring)
-def reader(
-    raw_dir,
-    processed_dir,
-    station_name,
-    # Processing options
-    force=False,
-    verbose=False,
-    parallel=False,
-    debugging_mode=False,
-):
-    ##------------------------------------------------------------------------.
-    #### - Define column names
-    column_names = [
-        "time",
-        "rainfall_rate_32bit",
-        "rainfall_accumulated_32bit",
-        "weather_code_synop_4680",
-        "weather_code_synop_4677",
-        "reflectivity_32bit",
-        "mor_visibility",
-        "laser_amplitude",
-        "number_particles",
-        "sensor_temperature",
-        "sensor_heating_current",
-        "sensor_battery_voltage",
-        "sensor_status",
-        "rainfall_amount_absolute_32bit",
-        "error_code",
-        "raw_drop_concentration",
-        "raw_drop_average_velocity",
-        "raw_drop_number",
-    ]
-
-    ##------------------------------------------------------------------------.
-    #### - Define reader options
-    reader_kwargs = {}
-
-    # - Define delimiter
-    reader_kwargs["delimiter"] = ";"
-
-    # Skip first row as columns names
-    reader_kwargs["header"] = None
-
-    # - Avoid first column to become df index !!!
-    reader_kwargs["index_col"] = False
-
-    # - Define behaviour when encountering bad lines
-    reader_kwargs["on_bad_lines"] = "skip"
-
-    # - Avoid UnicodeDecodeError: 'utf-8' codec can't decode byte 0xf0
-    reader_kwargs["encoding"] = "latin-1"
-
-    # - Define reader engine
-    #   - C engine is faster
-    #   - Python engine is more feature-complete
-    reader_kwargs["engine"] = "python"
-
-    # - Define on-the-fly decompression of on-disk data
-    #   - Available: gzip, bz2, zip
-    reader_kwargs["compression"] = "infer"
-
-    # - Strings to recognize as NA/NaN and replace with standard NA flags
-    #   - Already included: ‘#N/A’, ‘#N/A N/A’, ‘#NA’, ‘-1.#IND’, ‘-1.#QNAN’,
-    #                       ‘-NaN’, ‘-nan’, ‘1.#IND’, ‘1.#QNAN’, ‘<NA>’, ‘N/A’,
-    #                       ‘NA’, ‘NULL’, ‘NaN’, ‘n/a’, ‘nan’, ‘null’
-    reader_kwargs["na_values"] = ["na", "", "error"]
-
-    # Different encoding for this campaign
-    reader_kwargs["encoding"] = "latin-1"
-
-    ##------------------------------------------------------------------------.
-    #### - Define facultative dataframe sanitizer function for L0 processing
-    # - Rows with data corruption are removed by L0A processing.
-
-    def df_sanitizer_fun(df):
-        # Import pandas
-        import numpy as np
-        import pandas as pd
-
-        # - Special parsing if 'Error in data reading' in rainfall_rate_32bit column
-        if np.any(df["rainfall_rate_32bit"].str.startswith("Error in data reading!", na=False)):
-            df["rainfall_rate_32bit"] = df["rainfall_rate_32bit"].str.replace("Error in data reading!", "")
-            df["raw_drop_number"] = df["raw_drop_average_velocity"]
-            df["raw_drop_average_velocity"] = df["raw_drop_concentration"]
-            df["raw_drop_concentration"] = df["error_code"]
-            df["error_code"] = df["rainfall_amount_absolute_32bit"].str[7:]
-            df["rainfall_amount_absolute_32bit"] = df["rainfall_amount_absolute_32bit"].str[:7]
-
-        # - Convert time column to datetime
-        df["time"] = pd.to_datetime(df["time"], format="%d/%m/%Y %H:%M:%S", errors="coerce")
-
-        return df
-
-    ##------------------------------------------------------------------------.
-    #### - Define glob pattern to search data files in raw_dir/data/<station_name>
-    glob_patterns = "*.log*"
-
-    ####----------------------------------------------------------------------.
-    #### - Create L0A products
-    run_l0a(
-        raw_dir=raw_dir,
-        processed_dir=processed_dir,
-        station_name=station_name,
-        # Custom arguments of the reader for L0A processing
-        glob_patterns=glob_patterns,
-        column_names=column_names,
-        reader_kwargs=reader_kwargs,
-        df_sanitizer_fun=df_sanitizer_fun,
-        # Processing options
-        force=force,
-        verbose=verbose,
-        parallel=parallel,
-        debugging_mode=debugging_mode,
-    )