deriva-ml 1.8.10__py3-none-any.whl → 1.9.0__py3-none-any.whl

deriva_ml/build/lib/schema_setup/table_comments_utils.py

@@ -1,56 +0,0 @@
-import sys
-from deriva.core import ErmrestCatalog, get_credential
-import argparse
-import os
-from pathlib import Path
-
-
-def update_table_comments(model, schema_name: str, table_name: str, comments_dir: str) -> None:
-    table = model.schemas[schema_name].tables[table_name]
-    table_comments_dir = Path(comments_dir)/Path(f"{schema_name}/{table_name}")
-    for file in os.listdir(table_comments_dir):
-        file_path = os.path.join(table_comments_dir, file)
-        with open(file_path, "r") as f:
-            comment_str = f.read()
-            if file.split(".")[0] == table_name:
-                table.comment = comment_str
-            else:
-                table.columns[file.split(".")[0]].comment = comment_str
-
-
-def update_schema_comments(model, schema_name: str, comments_dir: str) -> None:
-    schema_comments_dir = Path(comments_dir)/Path(schema_name)
-    for table in os.listdir(schema_comments_dir):
-        if not table.endswith(".DS_Store"):
-            update_table_comments(model, schema_name, table, comments_dir)
-
-
-def main():
-    scheme = 'https'
-    parser = argparse.ArgumentParser()
-    parser.add_argument('--hostname', type=str, required=True)
-    parser.add_argument('--schema_name', type=str, required=True)
-    parser.add_argument('--catalog_id', type=str, required=True)
-    parser.add_argument('--comments_dir', type=str, required=True,
-                        help="The directory containing the comments files for the whole catalog")
-    parser.add_argument('--table_name', type=str,
-                        help="Only update the comments for one table")
-    args = parser.parse_args()
-
-    credentials = get_credential(args.hostname)
-    catalog = ErmrestCatalog(scheme, args.hostname, args.catalog_id, credentials)
-    model = catalog.getCatalogModel()
-    if args.table_name:
-        update_table_comments(model, args.schema_name, args.table_name, args.comments_dir)
-        model.apply()
-    else:
-        update_schema_comments(model, args.schema_name, args.comments_dir)
-        model.apply()
-
-
-if __name__ == '__main__':
-    sys.exit(main())
-
-
-
-# docs/<schema-name>/<table-name>/[table|<column-name>.Md

deriva_ml/schema_setup/alter_annotation.py

@@ -1,55 +0,0 @@
-import sys
-import argparse
-from deriva.core import get_credential, ErmrestCatalog
-from deriva.core.ermrest_model import Model
-
-from deriva_ml.schema_setup.annotations import generate_annotation
-
-
-def alter_table_annotation(
-    model_root: Model, schema_name: str, table_name: str, annotation: dict
-):
-    table = model_root.schemas[schema_name].tables[table_name]
-    table.alter(annotations=annotation)
-    model_root.apply()
-
-
-def alter_schema_annotation(model_root: Model, schema_name: str, annotation: dict):
-    schema = model_root.schemas[schema_name]
-    schema.alter(annotations=annotation)
-    model_root.apply()
-
-
-def main():
-    parser = argparse.ArgumentParser()
-    parser.add_argument("--hostname", type=str, required=True)
-    parser.add_argument("--schema_name", type=str, required=True)
-    parser.add_argument("--catalog_id", type=str, required=True)
-    args = parser.parse_args()
-    credentials = get_credential(args.hostname)
-    catalog = ErmrestCatalog("https", args.hostname, args.catalog_id, credentials)
-    model = catalog.getCatalogModel()
-    annotations = generate_annotation(model)
-    alter_table_annotation(
-        model, args.schema_name, "Workflow", annotations["workflow_annotation"]
-    )
-    alter_table_annotation(
-        model, args.schema_name, "Execution", annotations["execution_annotation"]
-    )
-    alter_table_annotation(
-        model,
-        args.schema_name,
-        "Execution_Metadata",
-        annotations["execution_metadata_annotation"],
-    )
-    alter_table_annotation(
-        model,
-        args.schema_name,
-        "Execution_Asset",
-        annotations["execution_asset_annotation"],
-    )
-    alter_schema_annotation(model, args.schema_name, annotations["schema_annotation"])
-
-
-if __name__ == "__main__":
-    sys.exit(main())

deriva_ml-1.8.10.dist-info/RECORD

@@ -1,33 +0,0 @@
-deriva_ml/__init__.py,sha256=r1Z9N5vtZkAET7emqhpAx2bf_xJUp5wHOc4_DIplsG8,1082
-deriva_ml/database_model.py,sha256=uhoyVyd8MQmY8J9ovCH8fjxhZDxxXNkdJyYdeyEGPXA,13898
-deriva_ml/dataset.py,sha256=xC6QPUp4MZcJiEnOEU3NnzoLBL9RcJWtPTyzIQP0Ivw,60666
-deriva_ml/dataset_aux_classes.py,sha256=YxjQnu2kS9kK_f8bGqhmgE6ty9GNeitCxfvReT9vaM0,6537
-deriva_ml/dataset_bag.py,sha256=e6IHv3saZUnZRfl0EjfnlV2NnmPeOagYYv3PuZqS1l0,11501
-deriva_ml/demo_catalog.py,sha256=xQPhFlflqwJskNQrQ-jdBSnGzBm2-aONBgcRxfsdNKM,11045
-deriva_ml/deriva_definitions.py,sha256=pZLPoUxiuJ-uGglmQ6sF9oVXsSUuOnPEqywoec78XNM,8893
-deriva_ml/deriva_ml_base.py,sha256=aVyGsFERZtpjNxfaVYzvKa7J0Ma-U3DEibfjnbr7lFQ,43817
-deriva_ml/deriva_model.py,sha256=LV3FjIhIlz13ckZSmu0aOJhT9EVE0-M9oVMudfkxb0g,12004
-deriva_ml/execution.py,sha256=VlapQGPDQI2MOmYnA5-hpf-XM6Fu4hPLpFjNN5q9Udo,29889
-deriva_ml/execution_configuration.py,sha256=bjnZwXN6M7YPy5dFQwoGEBU8YjhQRSe1FW0rL0V9TaM,3422
-deriva_ml/execution_environment.py,sha256=bCRKrCELDbGQDo7_FKfw7e8iMzVjSRZK3baKkqH5-_0,3264
-deriva_ml/feature.py,sha256=7e8WYPCfJSrGxJh9oUTduYSnB5ekybRhXa_0HIigS_w,5459
-deriva_ml/history.py,sha256=qTDLDs8Ow_6r7mDO0gZm0Fg81SWKOAgtCU5pzZoDRgM,2828
-deriva_ml/test_functions.py,sha256=-eqLHjjCQCLBNAr1ofbZekNiCOfMISSACRxT_YHER8I,4396
-deriva_ml/upload.py,sha256=CKtT-gBln3pnAll9TFaiPhFSHC-bzg9oE4ruh_OSOqY,22270
-deriva_ml/build/lib/schema_setup/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-deriva_ml/build/lib/schema_setup/alter_annotation.py,sha256=pkwk0WystN69JfAFK4iBJZAZVQKbRs-gN9IFYuS9rfg,1739
-deriva_ml/build/lib/schema_setup/annotation_temp.py,sha256=Euygu8wNklZFUbR6mz-pDWJemlzdsIn9d6j0f6fCfgE,9102
-deriva_ml/build/lib/schema_setup/create_schema.py,sha256=9LI2ivR0xS4kVBxkz3F1Ac4hoYGGOVkXYmuhllqWvKE,6528
-deriva_ml/build/lib/schema_setup/table_comments_utils.py,sha256=-2_ubEpoH7ViLVb-ZfW9wZbQ26DTKNgjkCABMzGu4i4,2140
-deriva_ml/schema_setup/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-deriva_ml/schema_setup/alter_annotation.py,sha256=HyGWe4fBLQY0wbcKnfrhEoVDs4SfnoOF0l_Rz5-tDlk,1794
-deriva_ml/schema_setup/annotations.py,sha256=Uogm9YkRtoKSdgfQlICqRywbCATppwBO-XryVSVyso8,9546
-deriva_ml/schema_setup/create_schema.py,sha256=jwziMWJPbjRgjiRBT-KtidnXI8YNEFO74A9fwfptjHY,10626
-deriva_ml/schema_setup/policy.json,sha256=77sf0Imy6CAQV0_VwwbA56_KROJ05WXsvT-Wjtkk538,1633
-deriva_ml/schema_setup/table_comments_utils.py,sha256=-2_ubEpoH7ViLVb-ZfW9wZbQ26DTKNgjkCABMzGu4i4,2140
-deriva_ml-1.8.10.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-deriva_ml-1.8.10.dist-info/METADATA,sha256=Mhx0joyR1gPEX8G6ZoEpvxNVW4sUG9C_S5TIA6ueZKk,670
-deriva_ml-1.8.10.dist-info/WHEEL,sha256=1tXe9gY0PYatrMPMDd6jXqjfpz_B-Wqm32CPfRC58XU,91
-deriva_ml-1.8.10.dist-info/entry_points.txt,sha256=ZiOvrYj022x544TQwi018ujeHRRDahNmwJnzn5ThacM,242
-deriva_ml-1.8.10.dist-info/top_level.txt,sha256=I1Q1dkH96cRghdsFRVqwpa2M7IqJpR2QPUNNc5-Bnpw,10
-deriva_ml-1.8.10.dist-info/RECORD,,