deriva-ml 1.17.15__py3-none-any.whl → 1.17.16__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- deriva_ml/__init__.py +2 -2
- deriva_ml/asset/asset.py +0 -4
- deriva_ml/catalog/__init__.py +6 -0
- deriva_ml/catalog/clone.py +1513 -22
- deriva_ml/catalog/localize.py +66 -29
- deriva_ml/core/base.py +12 -9
- deriva_ml/core/definitions.py +13 -12
- deriva_ml/core/ermrest.py +11 -12
- deriva_ml/core/mixins/annotation.py +2 -2
- deriva_ml/core/mixins/asset.py +3 -3
- deriva_ml/core/mixins/dataset.py +3 -3
- deriva_ml/core/mixins/execution.py +1 -0
- deriva_ml/core/mixins/feature.py +2 -2
- deriva_ml/core/mixins/file.py +2 -2
- deriva_ml/core/mixins/path_builder.py +2 -2
- deriva_ml/core/mixins/rid_resolution.py +2 -2
- deriva_ml/core/mixins/vocabulary.py +2 -2
- deriva_ml/core/mixins/workflow.py +3 -3
- deriva_ml/dataset/catalog_graph.py +3 -4
- deriva_ml/dataset/dataset.py +5 -3
- deriva_ml/dataset/dataset_bag.py +0 -2
- deriva_ml/dataset/upload.py +2 -2
- deriva_ml/demo_catalog.py +0 -1
- deriva_ml/execution/__init__.py +8 -8
- deriva_ml/execution/base_config.py +2 -2
- deriva_ml/execution/execution.py +5 -3
- deriva_ml/execution/execution_record.py +0 -1
- deriva_ml/execution/model_protocol.py +1 -1
- deriva_ml/execution/multirun_config.py +0 -1
- deriva_ml/execution/runner.py +3 -3
- deriva_ml/experiment/experiment.py +3 -3
- deriva_ml/feature.py +2 -2
- deriva_ml/interfaces.py +2 -2
- deriva_ml/model/__init__.py +45 -24
- deriva_ml/model/annotations.py +0 -1
- deriva_ml/model/catalog.py +3 -2
- deriva_ml/model/data_loader.py +330 -0
- deriva_ml/model/data_sources.py +439 -0
- deriva_ml/model/database.py +216 -32
- deriva_ml/model/fk_orderer.py +379 -0
- deriva_ml/model/handles.py +1 -1
- deriva_ml/model/schema_builder.py +816 -0
- deriva_ml/run_model.py +3 -3
- deriva_ml/schema/annotations.py +2 -1
- deriva_ml/schema/create_schema.py +1 -1
- deriva_ml/schema/validation.py +1 -1
- {deriva_ml-1.17.15.dist-info → deriva_ml-1.17.16.dist-info}/METADATA +1 -1
- deriva_ml-1.17.16.dist-info/RECORD +81 -0
- deriva_ml-1.17.15.dist-info/RECORD +0 -77
- {deriva_ml-1.17.15.dist-info → deriva_ml-1.17.16.dist-info}/WHEEL +0 -0
- {deriva_ml-1.17.15.dist-info → deriva_ml-1.17.16.dist-info}/entry_points.txt +0 -0
- {deriva_ml-1.17.15.dist-info → deriva_ml-1.17.16.dist-info}/licenses/LICENSE +0 -0
- {deriva_ml-1.17.15.dist-info → deriva_ml-1.17.16.dist-info}/top_level.txt +0 -0
deriva_ml/run_model.py
CHANGED
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@@ -29,10 +29,10 @@ from deriva.core import BaseCLI
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from hydra_zen import store, zen
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from deriva_ml.execution import (
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run_model,
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load_configs,
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get_multirun_config,
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get_all_multirun_configs,
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get_multirun_config,
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load_configs,
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run_model,
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)
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deriva_ml/schema/annotations.py
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import argparse
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import sys
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# Deriva imports - use importlib to avoid shadowing by local 'deriva.py' files
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import importlib
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import sys
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_ermrest_model = importlib.import_module("deriva.core.ermrest_model")
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_core_utils = importlib.import_module("deriva.core.utils.core_utils")
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from deriva.core import DerivaServer, ErmrestCatalog, get_credential
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from deriva.core.ermrest_model import Model, Schema, Table
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from deriva.core.typed import (
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AssetTableDef,
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BuiltinType,
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ColumnDef,
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ForeignKeyDef,
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SchemaDef,
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TableDef,
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VocabularyTableDef,
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AssetTableDef,
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)
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from deriva_ml.core.definitions import ML_SCHEMA, MLTable, MLVocab
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deriva_ml/schema/validation.py
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@@ -26,7 +26,7 @@ from typing import TYPE_CHECKING, Any
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if TYPE_CHECKING:
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from deriva_ml.core.base import DerivaML
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from deriva_ml.core.definitions import
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from deriva_ml.core.definitions import MLTable, MLVocab
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class ValidationSeverity(str, Enum):
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deriva_ml/.DS_Store,sha256=gb-f5IXVed_gS5Be1Z6WxCYjrI_r5SdblvfFpIOY4ro,8196
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deriva_ml/__init__.py,sha256=l-0UL_Q3tcWx2gFTAlzg9-zBvhM3eR9CwJHF8NqXNSs,4152
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deriva_ml/bump_version.py,sha256=DrVJA8AKqvwQ8Cc-omBLOjfDcKdBxUXm_XNj11SIJZo,11905
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deriva_ml/demo_catalog.py,sha256=W3Uihbtl9YDj82oGfr7OT3KVT96aggWsTI-Kc1W7pY0,17708
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deriva_ml/feature.py,sha256=Xt-pZBbZZWxv9jnBhbk_L6mux1JiTL5DANKe3UGSNDA,8661
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deriva_ml/install_kernel.py,sha256=_hN9cnfuxhTP2w0zmITol0aFYUGqnYT3LqMVWkUIDVg,6825
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deriva_ml/interfaces.py,sha256=IxEY0M7BIHVyRD5IybSHK7z5P_TLQzozvMvC6RMaqPE,30109
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deriva_ml/run_model.py,sha256=d-88hRqPNgfArTYgSU_X30FEHusvjFb7gpR-Bq2WxQY,11823
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deriva_ml/run_notebook.py,sha256=BUShaMlzExfcjerm54en_zow2rcQFK6L0eHX-wwt_cg,27713
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deriva_ml/asset/__init__.py,sha256=YuV0rFEL0kMDzB8W-qWiUs6HahEadiaYWuS-d3OcoMw,445
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deriva_ml/asset/asset.py,sha256=UX1Kpx6PEYAjmClFwjdWMK1hTmYeQc4lxLeGk0G2pz8,13309
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deriva_ml/asset/aux_classes.py,sha256=QIH_pd3koIG04fb-gzHVgdKtykfVgDGJH3F7RN3-dwg,3486
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deriva_ml/catalog/__init__.py,sha256=mR523GRLrymC65Z0yPZnv2VGLuHSnjggRWh0ZTPZU9o,840
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deriva_ml/catalog/clone.py,sha256=nCiMhC0IHGIElhAp4nP2azpoDBI9CC1hFrhIr5x03fw,136170
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deriva_ml/catalog/localize.py,sha256=p33gxJE9fgFNTFUlh7LIKmO8SjYdWmHUBtd0_UoUu78,17149
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deriva_ml/core/__init__.py,sha256=oqWgo4ckyAfebeXBQXJ9O8ans81tbmzPRnsVHLeVXT8,2000
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deriva_ml/core/base.py,sha256=W5gLM0lHEbxh9xASqn4aAAN17gj-poeeGaZBMFhlBRU,57180
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deriva_ml/core/config.py,sha256=2RjpJrzdXC1JlrDGozWbtW_0YAbOf7eyHHr-E0xTozw,9681
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deriva_ml/core/constants.py,sha256=dlS3Wa7Tmmh2JVhhCJjN5Wltu0bJB5rMOSChJ1bdhRA,5300
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deriva_ml/core/definitions.py,sha256=oOezqSHDLzS959t6UByiE_p3SIDIhhtGJw_SZcFV1V0,5579
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deriva_ml/core/enums.py,sha256=QonjDcebyEa8BmGkDUvMjYlLQYJXAbtOd8GG3ZvVXE4,6702
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deriva_ml/core/ermrest.py,sha256=T964lLBHs92QLwP_kyVyvNp6TWkt1Xl21ao-_0MFGZ8,10067
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deriva_ml/core/exceptions.py,sha256=RKiPRe84t2ekjqeVOuMde7B8LjUH1lFu5jfN4sqXM6I,10255
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deriva_ml/core/filespec.py,sha256=jfZyXWjp6khRmB2hJbCUM9n2oW7TjfQ2KQScYgGkVJI,7534
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deriva_ml/core/logging_config.py,sha256=Nbs_8AbjSeJ0epONXC1oGcq5BmvnYsV5tcZ3qbLk_FU,7424
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deriva_ml/core/validation.py,sha256=TcGPmjmw2e0WI5cPcszHi_vc2ePnw7hh2GXV7YKsaU4,14369
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deriva_ml/core/mixins/__init__.py,sha256=0NhK7BKeEB6tznNqCLyZo3RGoHg0FkubFET9jPMrdsY,1719
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deriva_ml/core/mixins/annotation.py,sha256=SeohJGPCC8NGwEY25Ag5aLPxUurX82g5FQjthMOKnaY,35754
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deriva_ml/core/mixins/asset.py,sha256=Tba277vArKyrk2LpYW8bKSpkWGEl-16kXK2Mel0MPdk,15024
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deriva_ml/core/mixins/dataset.py,sha256=OUs2EU2mfU_hYtjgTPyOPjqoebyz5vxMPc3J_5FYDck,9389
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deriva_ml/core/mixins/execution.py,sha256=drTtvJWNkiwbUG4Q82XNe4fUIZz4zev_qMB0teiXOEY,16498
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deriva_ml/core/mixins/feature.py,sha256=0O7IrIefRaOuTV1WHuxThbDoqF40qpZu8rU2lJupbIc,16475
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deriva_ml/core/mixins/file.py,sha256=ZDfi62knh0nFyucaFL8DOOWIqZ-etQLBmnS1Qed4QL4,11531
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deriva_ml/core/mixins/path_builder.py,sha256=EjCw9h8fPGbwZYwboTujImpFGTZN3RU1p7x-PoruF8g,5311
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deriva_ml/core/mixins/rid_resolution.py,sha256=zucuhEPPjIdEGkvDGlk0JvGrryl8J_W-mTg6mOet2ns,7197
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deriva_ml/core/mixins/vocabulary.py,sha256=u2iXsns45QVEl0aoNK8nNJ_UstBukkiagHxK8RdCrto,16500
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deriva_ml/core/mixins/workflow.py,sha256=nRLzbOLnNF2liF-tq7aT7VOAxofrqLBye9-MugbRcVs,12907
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deriva_ml/dataset/__init__.py,sha256=nIU6NLF3LJ_8FF4caOwtOpZPYFRAECZFeWtA_hcdCbM,329
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deriva_ml/dataset/aux_classes.py,sha256=mwSgatqIbjvz-kaxD2zzFt-tufKMDM3hgQLyS-KrZ8w,7881
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deriva_ml/dataset/catalog_graph.py,sha256=Si7_QPhXpxEpF-f0hB6lo3fPqBbrjvBoEpQILcKlZ3A,23725
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deriva_ml/dataset/dataset.py,sha256=Kx1UcnohdA3uIU2MIDWQcC5f8TsHbAc8_5wbNQA6WP0,75786
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deriva_ml/dataset/dataset_bag.py,sha256=gfDZxSQ_IDJv8RUSB1UxZeejsoipRKE3TndE0lMID0w,71040
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deriva_ml/dataset/history.py,sha256=1KssgoluZSJYyEBfnfb7miaUFZzGnGLhvhaJikey44Y,3467
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deriva_ml/dataset/upload.py,sha256=fcEWyGIinQVnmIIudLlJA566ipWCPEVodf2RVpQskLc,24845
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deriva_ml/execution/__init__.py,sha256=a9fpoKGQBSMr559UsUmi680HyB8gBT0DdYKyOMCYdjI,1844
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deriva_ml/execution/base_config.py,sha256=74hOBRd4NBp1UvfeEefxDnyaa2EL-W9_jCsMX53zDQg,22843
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deriva_ml/execution/environment.py,sha256=B7nywqxFTRUWgyu8n7rFoKcVC9on422kjeFG2FPQfvg,9302
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deriva_ml/execution/execution.py,sha256=UzRLwmJn3ce9vQ-R64mDVk5MUy8BzjuCnBcXfL-cYbk,59315
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deriva_ml/execution/execution_configuration.py,sha256=nQ56-_KGqa-hBKYgA4G7D9ncjLKUGbjwDpiLnRon9SA,6464
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deriva_ml/execution/execution_record.py,sha256=vF1EmQbmjbnfe0KbyFNFJtfwK1SzfCE7tyzidbJKiRw,22399
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deriva_ml/execution/find_caller.py,sha256=Rz5LPRYwM5u3qAX0A6inJYZZPF_VCHUU0kK1zTAjirg,10059
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deriva_ml/execution/model_protocol.py,sha256=bFhRTpFU1FFdpXr2LlidkYXlrzX9W5KLLWRoyWr_V3k,5937
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deriva_ml/execution/multirun_config.py,sha256=ZQaSRIg_ctALCrsnWwrT5KwXnDJEEc2zquHrEaVK2BQ,4978
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deriva_ml/execution/runner.py,sha256=DkQhB8lvw4MDc4MCAJ7_nChR69mqoB45XFnSse1Inro,21560
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deriva_ml/execution/workflow.py,sha256=dcEaiTr2Uj4AASmUR5yai3vkrjfv3KzTO5J239PNOHE,23353
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deriva_ml/experiment/__init__.py,sha256=HWyh4p-QOt-6sRFv-JLxvPuZxth8M2xTGfAwDx_OKJM,202
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deriva_ml/experiment/experiment.py,sha256=gYoLX84Y417VSgQseUCO2ewV57WCTsEZKvAkGVrsx1Y,15294
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deriva_ml/model/__init__.py,sha256=_bM_c4hz4aY-RIC6qNokyf3OwNBlWYTemDJ190rAZ5A,3086
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deriva_ml/model/annotations.py,sha256=K4RNcbtD52sr9TbKxqf_zXrQP7rMr379Dwq1YKjYAIQ,43568
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deriva_ml/model/catalog.py,sha256=Wn4ivwthE4HIGzkaegl-JA__UxLv81-8CbkxMna4YDQ,28856
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deriva_ml/model/data_loader.py,sha256=1dAQSx_-xiNlnWWsQ8Tp2W3n8nagktDirAr-dvUTZFo,10474
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deriva_ml/model/data_sources.py,sha256=oxqP8cFAVWT8UUFx5WQfpgqNV9EXcuQW_S3KBLe_Ywo,13548
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deriva_ml/model/database.py,sha256=11HSCH3Ea1FdvnAuctrOnrk5j-BXBFq675Nsxlrmock,13878
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deriva_ml/model/deriva_ml_database.py,sha256=73_P5mArxe3zyAtBaZSop9V9cw-uweHEh811cPU0h0Y,10523
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deriva_ml/model/fk_orderer.py,sha256=pTIPwThOhykl8-H3OkVAVr5c8jp_9X5gnMubLxUfP44,12291
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deriva_ml/model/handles.py,sha256=12h_9uduZhYD82dEmIgomegAbQpFi52JN39z1XN4MBc,478
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deriva_ml/model/schema_builder.py,sha256=vIO7re0q2ZwKaNjD_qquZVp3P3d_8C6ermgpLTXFLaw,30935
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deriva_ml/schema/__init__.py,sha256=3PHvAWwx-qsTFnceKUdgZN1sln0n6-yXj1O59uV15WY,473
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deriva_ml/schema/annotations.py,sha256=uZ83t9fI1fE9XcufmeInAjn-knawHGTNDzi1W99mBng,19601
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deriva_ml/schema/check_schema.py,sha256=6dadLYHPqRex6AYVClmsESI8WhC7-rb-XnGf2G298xw,3609
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deriva_ml/schema/create_schema.py,sha256=KJv-7eQrF8T96vQYPoKeUrA8MLJafiYyb1QFrhTrE2Q,16614
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deriva_ml/schema/deriva-ml-reference.json,sha256=AEOMIgwKO3dNMMWHb0lxaXyamvfAEbUPh8qw0aAtsUQ,242460
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deriva_ml/schema/policy.json,sha256=5ykB8nnZFl-oCHzlAwppCFKJHWJFIkYognUMVEanfY8,1826
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deriva_ml/schema/table_comments_utils.py,sha256=4flCqnZAaqg_uSZ9I18pNUWAZoLfmMCXbmI5uERY5vM,2007
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deriva_ml/schema/validation.py,sha256=el5Sfh7ne_FoJ2KVUk9DxD3p7AS5ScZ5wmO0ykNtlRw,19901
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deriva_ml-1.17.16.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
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deriva_ml-1.17.16.dist-info/METADATA,sha256=DvZ21vg2feB01pN6pJ9uRIvf9-KvEO6U87JYPoBuUjM,1216
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deriva_ml-1.17.16.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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deriva_ml-1.17.16.dist-info/entry_points.txt,sha256=nwRBpDI6yGUMhvEJG__O0LHz6JovazaVXhykvSNF4og,554
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deriva_ml-1.17.16.dist-info/top_level.txt,sha256=I1Q1dkH96cRghdsFRVqwpa2M7IqJpR2QPUNNc5-Bnpw,10
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deriva_ml/__init__.py,sha256=a7mk8HCe7i3SUGPRPm5ECvZwAYHswAEwgeGD6CBIAEk,4152
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deriva_ml/bump_version.py,sha256=DrVJA8AKqvwQ8Cc-omBLOjfDcKdBxUXm_XNj11SIJZo,11905
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deriva_ml/demo_catalog.py,sha256=_gQVeZm38dHmd2EThhfvCWRPt1meSuNXerkRULRO87U,17760
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