deepresearch-flow 0.1.2__py3-none-any.whl → 0.2.1__py3-none-any.whl

{deepresearch_flow-0.1.2.dist-info → deepresearch_flow-0.2.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: deepresearch-flow
-Version: 0.1.2
+Version: 0.2.1
 Summary: Workflow tools for paper extraction, review, and research automation.
 Author-email: DengQi <dengqi935@gmail.com>
 License: MIT License
@@ -49,6 +49,7 @@ Requires-Dist: jinja2>=3.1.3
 Requires-Dist: json-repair>=0.31.0
 Requires-Dist: jsonschema>=4.21.1
 Requires-Dist: markdown-it-py>=3.0.0
+Requires-Dist: pypdf>=3.0.0
 Requires-Dist: pybtex>=0.24.0
 Requires-Dist: rich>=13.7.1
 Requires-Dist: starlette>=0.37.2
@@ -152,6 +153,7 @@ Incremental behavior:
 - Use `--retry-failed` to retry only failed documents listed in `paper_errors.json`.
 - Use `--verbose` for detailed logs alongside progress bars.
 - Extract-time rendering defaults to the same built-in template as `--prompt-template`.
+- Output JSON is written as `{"template_tag": "...", "papers": [...]}`.
 - A summary table prints input/prompt/output character totals, token estimates, and throughput after each run.
 - Progress bars include a live prompt/completion/total token ticker.
 
@@ -207,18 +209,23 @@ Render outputs, compute stats, and serve a local web UI over paper JSON.
 
 JSON input formats:
 
-- For `db render-md`, `db statistics`, `db filter`, and `db generate-tags`, the input is the aggregated JSON list.
+- For `db render-md`, `db statistics`, `db filter`, and `db generate-tags`, the input can be either an aggregated JSON list or `{"template_tag": "...", "papers": [...]}` (the commands operate on `papers`).
 - For `db serve`, each input JSON must be an object: `{"template_tag": "simple", "papers": [...]}`.
-  When `template_tag` is missing, the server attempts to infer it as a fallback.
+  When `template_tag` is missing, the server attempts to infer it as a fallback (legacy list-only inputs are rejected).
 
 Web UI highlights:
 
 - Summary/Source/PDF/PDF Viewer views with tab navigation.
 - Split view: choose left/right panes independently (summary/source/pdf/pdf viewer) via URL params.
-- Summary view includes a collapsible outline panel (top-left) and a back-to-top control (bottom-left).
+- Summary/Source views include a collapsible outline panel (top-left) and a back-to-top control (bottom-left).
 - Summary template dropdown shows only available templates per paper.
-- Source view renders Markdown and supports embedded HTML tables plus `data:image/...;base64` `<img>` tags.
+- Homepage filters: PDF/Source/Summary availability and template tags, plus a filter syntax input (`tmpl:...`, `has:pdf`, `no:source`).
+- Homepage stats: total and filtered counts for PDF/Source/Summary plus per-template totals.
+- Stats page includes keyword frequency charts.
+- Source view renders Markdown and supports embedded HTML tables plus `data:image/...;base64` `<img>` tags (images are constrained to the content width).
 - PDF Viewer is served locally (PDF.js viewer assets) to avoid cross-origin issues with local PDFs.
+- PDF-only entries are surfaced for unmatched PDFs under `--pdf-root` (metadata title if available, otherwise filename), with badges and detail warnings.
+- PDF-only entries are excluded from stats counts.
 - Merge behavior for multi-input serve: title similarity (>= 0.95), preferring `bibtex.fields.title` and falling back to `paper_title`.
 - Cache merged inputs with `--cache-dir`; bypass with `--no-cache`.
 
@@ -250,6 +257,7 @@ deepresearch-flow paper db filter \
 deepresearch-flow paper db statistics \
   --input paper_infos.json \
   --top-n 20
+# Statistics also include keyword frequency (normalized to lowercase)
 
 # Serve a local read-only web UI (loads charts/libs via CDN)
 deepresearch-flow paper db serve \
@@ -278,7 +286,7 @@ Web search syntax (Scholar-style):
 - Quoted phrases: `title:"nearest neighbor"`
 - OR: `fpga OR asic`
 - Negation: `-survey` or `-tag:survey`
-- Fields: `title:`, `author:`, `tag:`, `venue:`, `year:`, `month:`
+- Fields: `title:`, `author:`, `tag:`, `venue:`, `year:`, `month:` (content tags only)
 - Year range: `year:2020..2024`
 
 Other database helpers:

{deepresearch_flow-0.1.2.dist-info → deepresearch_flow-0.2.1.dist-info}/RECORD

@@ -4,8 +4,8 @@ deepresearch_flow/cli.py,sha256=WhPhs-Cg4kHow0h0KTVaGTjQVXCPrlNvMyvgxCD8qgI,371
 deepresearch_flow/paper/__init__.py,sha256=sunaOkcgAJBrfmcaJTumcWbPGVUSGWvOv2a2Yidzy0A,43
 deepresearch_flow/paper/cli.py,sha256=4UY3KHi6BUGztL1vB4w0cCMiIAo9KNxrfQn1GBHt6fA,11153
 deepresearch_flow/paper/config.py,sha256=5uGTWfAfzpv4w_JxC0w6GF2teaxF5b3rD8LaDqPVshU,8611
-deepresearch_flow/paper/db.py,sha256=6d8bid9PiXJEHk79nqcAXoi6ZwpLlenKsbrkBIcTG1A,31648
-deepresearch_flow/paper/extract.py,sha256=88H1QOpzqpzlYukQ45BkuurNzxoDDWUBM0RF7Zt8IDI,31955
+deepresearch_flow/paper/db.py,sha256=uX-gblqh-ltoMO6mv0KPAm-sgNaRz46jaN0kxtzvP8s,33242
+deepresearch_flow/paper/extract.py,sha256=ID1dd2r6LTB0kRF4qBSH6bGtBGv0znw--g_mXYBcoeU,32314
 deepresearch_flow/paper/llm.py,sha256=R4rmFoYnGq_JiQODr4Jzk5j8U-j2NSYUXex6eR-WHXg,3929
 deepresearch_flow/paper/prompts.py,sha256=mV7cEXw8pwukBUE4Trah0SjEPSSDgg5-RGaNaUdo4EU,519
 deepresearch_flow/paper/render.py,sha256=KeccrRGf1_sxoaiT6SUDkFRj9sStReoEwNvlw1ir7qw,2181
@@ -40,9 +40,15 @@ deepresearch_flow/paper/templates/default_paper.md.j2,sha256=3azu48534QtLtHrCwI1
 deepresearch_flow/paper/templates/eight_questions.md.j2,sha256=Ecz4CD3nd7jZ4Dg8himZkTwF4WDkk0ILWk8V728uOPI,3038
 deepresearch_flow/paper/templates/three_pass.md.j2,sha256=ZRj-NkpZePnqp0gSE8OT1dN5Lr5RW4vdOYdeVejYJW0,1576
 deepresearch_flow/paper/web/__init__.py,sha256=eQBtBjvOYsNEdivHTI0aO286SCG2c86xI02tf-0jz5I,39
-deepresearch_flow/paper/web/app.py,sha256=VO1fa-fJrI8mtT0FwPQceeRHU6Ky4meABh-nj4HA4HE,78761
+deepresearch_flow/paper/web/app.py,sha256=OB0iHU5pa7zJmP4IQAHPg4S-ucfcWBRBfHfaSDNJDTE,118325
 deepresearch_flow/paper/web/query.py,sha256=vTegfm5zGVkYCd6_K3yNrXJEmKMccUUFKG9DePPcKMw,1938
 deepresearch_flow/paper/web/pdfjs/LICENSE,sha256=DVQuDIgE45qn836wDaWnYhSdxoLXgpRRKH4RuTjpRZQ,10174
+deepresearch_flow/paper/web/pdfjs/build/pdf.js,sha256=2Ddm8gpMMfvOWinZh4nN--94GxR0QdpFvh0Qeejg-Bw,568294
+deepresearch_flow/paper/web/pdfjs/build/pdf.js.map,sha256=W0nwVFY4inhYxz1raDU6NZ6-rNA21FxLj13txVAqbm4,1434098
+deepresearch_flow/paper/web/pdfjs/build/pdf.sandbox.js,sha256=zMzu-XvrKhoDzab-stHvnuoT5p5o7sR0UB-w0t_TvHg,637132
+deepresearch_flow/paper/web/pdfjs/build/pdf.sandbox.js.map,sha256=iAvHXmz6kQmm-Nv3pB9veVJ_53mRJj7_BoKAuCKGJvc,553585
+deepresearch_flow/paper/web/pdfjs/build/pdf.worker.js,sha256=4_AFsiFG8pCvFqwNwWq0Xw34mBc94cxTnW5AkoMtqdg,1981637
+deepresearch_flow/paper/web/pdfjs/build/pdf.worker.js.map,sha256=dyqB8mgSqo8XFM9Ml0ptoGJqpr_2prfP166MSh-VPQM,4971937
 deepresearch_flow/paper/web/pdfjs/web/compressed.tracemonkey-pldi-09.pdf,sha256=NmL_UZ5IWBBSBVK_MB2MOyuRf9L4MwP0ll16vtNn4RM,1016315
 deepresearch_flow/paper/web/pdfjs/web/debugger.css,sha256=LcUKndK6qiHOLQIRb2V9MYYzjJGGsJBaSAzl2nQ1uss,2482
 deepresearch_flow/paper/web/pdfjs/web/debugger.js,sha256=OQAJHZHOzFZiEqQIavKOWNXs7pT3VySfCmveRCuR190,17756
@@ -410,9 +416,9 @@ deepresearch_flow/recognize/__init__.py,sha256=yMAqbdCzpdRSiwFhq9j7yx9ZWxqz_Zq3v
 deepresearch_flow/recognize/cli.py,sha256=zhJi6f0Ha6UvX-Q4mdPdM9uz0SoBuCEnRwzDslMN2Eg,16276
 deepresearch_flow/recognize/markdown.py,sha256=y-PMJbGqrfWCNBVGanXK1M4OuMP9e1eqh7HDYye5a7Q,8757
 deepresearch_flow/recognize/organize.py,sha256=GSLmo037rpARSecaPxNCuIlLBbbilx8msWFJDqYJ4hc,3561
-deepresearch_flow-0.1.2.dist-info/licenses/LICENSE,sha256=hT8F2Py1pe6flxq3Ufdm2UKFk0B8CBm0aAQfsLXfvjw,1063
-deepresearch_flow-0.1.2.dist-info/METADATA,sha256=F5OJwc0lSXo1DxelsFoyfacyxqvEzsugtPyY37rqfK0,14395
-deepresearch_flow-0.1.2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-deepresearch_flow-0.1.2.dist-info/entry_points.txt,sha256=1uIKscs0YRMg_mFsg9NjsaTt4CvQqQ_-zGERUKhhL_Y,65
-deepresearch_flow-0.1.2.dist-info/top_level.txt,sha256=qBl4RvPJNJUbL8CFfMNWxY0HpQLx5RlF_ko-z_aKpm0,18
-deepresearch_flow-0.1.2.dist-info/RECORD,,
+deepresearch_flow-0.2.1.dist-info/licenses/LICENSE,sha256=hT8F2Py1pe6flxq3Ufdm2UKFk0B8CBm0aAQfsLXfvjw,1063
+deepresearch_flow-0.2.1.dist-info/METADATA,sha256=n7JgsLFBDM80UkhTHCtKn2biC-_mAA-sGBilxnIPzso,15250
+deepresearch_flow-0.2.1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+deepresearch_flow-0.2.1.dist-info/entry_points.txt,sha256=1uIKscs0YRMg_mFsg9NjsaTt4CvQqQ_-zGERUKhhL_Y,65
+deepresearch_flow-0.2.1.dist-info/top_level.txt,sha256=qBl4RvPJNJUbL8CFfMNWxY0HpQLx5RlF_ko-z_aKpm0,18
+deepresearch_flow-0.2.1.dist-info/RECORD,,