deepliif 1.2.0__py3-none-any.whl → 1.2.1__py3-none-any.whl

deepliif/postprocessing.py

@@ -1053,17 +1053,17 @@ def calculate_large_noise_thresh(large_noise_thresh, resolution):
     if large_noise_thresh != 'default':
         return large_noise_thresh
     if resolution == '10x':
-        return 250
-    elif resolution == '20x':
         return 1000
-    else: # 40x
+    elif resolution == '20x':
         return 4000
+    else: # 40x
+        return 16000
 
 
 def compute_cell_results(seg, marker, resolution, version=3,
                          seg_thresh=DEFAULT_SEG_THRESH,
                          noise_thresh=DEFAULT_NOISE_THRESH,
-                         large_noise_thresh='default'):
+                         large_noise_thresh=None):
     """
     Perform postprocessing to compute individual cell results.
 
@@ -1134,7 +1134,7 @@ def compute_final_results(orig, seg, marker, resolution,
                           size_thresh_upper=None,
                           seg_thresh=DEFAULT_SEG_THRESH,
                           noise_thresh=DEFAULT_NOISE_THRESH,
-                          large_noise_thresh='default'):
+                          large_noise_thresh=None):
     """
     Perform postprocessing to compute final count and image results.
 

{deepliif-1.2.0.dist-info → deepliif-1.2.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: deepliif
-Version: 1.2.0
+Version: 1.2.1
 Summary: DeepLIIF: Deep-Learning Inferred Multiplex Immunofluorescence for Immunohistochemical Image Quantification
 Home-page: https://github.com/nadeemlab/DeepLIIF
 Author: Parmida93
@@ -66,7 +66,7 @@ segmentation.*
 
 © This code is made available for non-commercial academic purposes.
 
-![Version](https://img.shields.io/static/v1?label=latest&message=v1.2.0&color=darkgreen)
+![Version](https://img.shields.io/static/v1?label=latest&message=v1.2.1&color=darkgreen)
 [![Total Downloads](https://static.pepy.tech/personalized-badge/deepliif?period=total&units=international_system&left_color=grey&right_color=blue&left_text=total%20downloads)](https://pepy.tech/project/deepliif?&left_text=totalusers)
 
 ![overview_image](./images/overview.png)*Overview of DeepLIIF pipeline and sample input IHCs (different 

{deepliif-1.2.0.dist-info → deepliif-1.2.1.dist-info}/RECORD

@@ -1,6 +1,6 @@
 cli.py,sha256=luwzcSrRZMePfJ-h4Hgz2X7lYC70TUVxGfEo3LyPJgQ,58938
 deepliif/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-deepliif/postprocessing.py,sha256=QkeyTpR5zMvsv5mj59hRK7HXpIb2fZ_81ezfMSGAhTA,42610
+deepliif/postprocessing.py,sha256=KIKEp0T5rBsJWfGG6aRYa91-dFoO5nnyYj78s17rlSQ,42602
 deepliif/postprocessing__OLD__DELETE.py,sha256=cM-cYVidY691Sjb1-B8a1jkLq5UR_hTCbuKzuF4765o,17589
 deepliif/train.py,sha256=-ZORL5vQrD0_Jq2Adgr3w8vJ7L1QcAgNTqMnBgtixgk,15757
 deepliif/data/__init__.py,sha256=IfqVFnFSPQJZnORdRq4sNkJiylr1TaKNmhvWP_aLHdg,5492
@@ -39,9 +39,9 @@ deepliif/util/image_pool.py,sha256=M89Hc7DblRWroNP71S9mAdRn7h3DrhPFPjqFxxZYSgw,2
 deepliif/util/util - modified tensor_to_pil.py,sha256=fd2SeSuiWIuUIOx4FWhGGw8mP7zsfShlMM2l1tQAWQU,8438
 deepliif/util/util.py,sha256=WV2a1Rt-McmZm3BKW7TqC2oAKkvxWhZvjofGSfY6y7s,6810
 deepliif/util/visualizer.py,sha256=6E1sPbXdgLFB9mnPwtfEjm9O40viG4dfv5MyTpOQQpo,20210
-deepliif-1.2.0.dist-info/LICENSE.md,sha256=HlZw_UPS6EtJimJ_Ci7xKh-S5Iubs0Z8y8E6EZ3ZNyE,956
-deepliif-1.2.0.dist-info/METADATA,sha256=aotU9YHFS0Y9Cxz57c81Bz_CmBEuMfw_vmXvgjRwoy0,35267
-deepliif-1.2.0.dist-info/WHEEL,sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18,92
-deepliif-1.2.0.dist-info/entry_points.txt,sha256=f70-10j2q68o_rDlsE3hspnv4ejlDnXwwGZ9JJ-3yF4,37
-deepliif-1.2.0.dist-info/top_level.txt,sha256=vLDK5YKmDz08E7PywuvEjAo7dM5rnIpsjR4c0ubQCnc,13
-deepliif-1.2.0.dist-info/RECORD,,
+deepliif-1.2.1.dist-info/LICENSE.md,sha256=HlZw_UPS6EtJimJ_Ci7xKh-S5Iubs0Z8y8E6EZ3ZNyE,956
+deepliif-1.2.1.dist-info/METADATA,sha256=xu8cStwph-BHiH7995ULPGLDDCywxjon8Llu-uzioz4,35267
+deepliif-1.2.1.dist-info/WHEEL,sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18,92
+deepliif-1.2.1.dist-info/entry_points.txt,sha256=f70-10j2q68o_rDlsE3hspnv4ejlDnXwwGZ9JJ-3yF4,37
+deepliif-1.2.1.dist-info/top_level.txt,sha256=vLDK5YKmDz08E7PywuvEjAo7dM5rnIpsjR4c0ubQCnc,13
+deepliif-1.2.1.dist-info/RECORD,,