deepliif 1.1.14__py3-none-any.whl → 1.2.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (10) hide show
  1. deepliif/models/__init__ - multiprocessing (failure).py +980 -0
  2. deepliif/models/__init__.py +54 -51
  3. deepliif/util/__init__.py +103 -16
  4. deepliif/util/util - modified tensor_to_pil.py +255 -0
  5. {deepliif-1.1.14.dist-info → deepliif-1.2.0.dist-info}/METADATA +4 -2
  6. {deepliif-1.1.14.dist-info → deepliif-1.2.0.dist-info}/RECORD +10 -8
  7. {deepliif-1.1.14.dist-info → deepliif-1.2.0.dist-info}/LICENSE.md +0 -0
  8. {deepliif-1.1.14.dist-info → deepliif-1.2.0.dist-info}/WHEEL +0 -0
  9. {deepliif-1.1.14.dist-info → deepliif-1.2.0.dist-info}/entry_points.txt +0 -0
  10. {deepliif-1.1.14.dist-info → deepliif-1.2.0.dist-info}/top_level.txt +0 -0
{deepliif-1.1.14.dist-info → deepliif-1.2.0.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: deepliif
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- Version: 1.1.14
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+ Version: 1.2.0
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  Summary: DeepLIIF: Deep-Learning Inferred Multiplex Immunofluorescence for Immunohistochemical Image Quantification
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  Home-page: https://github.com/nadeemlab/DeepLIIF
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  Author: Parmida93
@@ -19,6 +19,8 @@ Requires-Dist: requests (==2.32.2)
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  Requires-Dist: dask (==2021.11.2)
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  Requires-Dist: visdom (>=0.1.8.3)
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  Requires-Dist: python-bioformats (>=4.0.6)
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+ Requires-Dist: imagecodecs (==2023.3.16)
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+ Requires-Dist: zarr (==2.16.1)
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  <!-- PROJECT LOGO -->
@@ -64,7 +66,7 @@ segmentation.*
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  © This code is made available for non-commercial academic purposes.
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- ![Version](https://img.shields.io/static/v1?label=latest&message=v1.1.14&color=darkgreen)
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+ ![Version](https://img.shields.io/static/v1?label=latest&message=v1.2.0&color=darkgreen)
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  [![Total Downloads](https://static.pepy.tech/personalized-badge/deepliif?period=total&units=international_system&left_color=grey&right_color=blue&left_text=total%20downloads)](https://pepy.tech/project/deepliif?&left_text=totalusers)
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  ![overview_image](./images/overview.png)*Overview of DeepLIIF pipeline and sample input IHCs (different
{deepliif-1.1.14.dist-info → deepliif-1.2.0.dist-info}/RECORD RENAMED
@@ -17,11 +17,12 @@ deepliif/models/DeepLIIFKD_model.py,sha256=edq9fxrDspGivuFlAYZp9B0Opp3BRIosA9e1T
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  deepliif/models/DeepLIIF_model.py,sha256=6vmsXcBcoALrhJLa7XGhDmLamO_WCzTDYEyVUBE482o,23857
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  deepliif/models/SDG_model.py,sha256=3opz7uEyhvVJ8fF4_Jw4ho1MBcc9OVye-ByZD_KF2j0,10142
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  deepliif/models/__init__ - different weighted.py,sha256=Oe6ichU-Qia2mODGUtQTh1OBZZnv5N-93AzOfzQiHlw,32227
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+ deepliif/models/__init__ - multiprocessing (failure).py,sha256=bxM2hTvpdwzz3DG6Fbxu03C4MHsEE9lF_rd34TwiGOg,39835
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  deepliif/models/__init__ - run_dask_multi dev.py,sha256=vt8X8qeiJr2aPhFi6muZEJLUSsr8XChfI45NSwL8Rfg,39449
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  deepliif/models/__init__ - time gens.py,sha256=mRUtxNaGDZuhlQtKdA-OvGWTQwl7z2yMWc-9l0QrgaY,32922
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  deepliif/models/__init__ - timings.py,sha256=S_wFImwxzGKx8STqbpcYCPOlbb_84WLMRDSnaWC8qFg,31750
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  "deepliif/models/__init__ - weights, empty, zarr, tile count.py",sha256=JsU9ui0Kv8AzlP3_1LeiNrQLHg9X_3r8WwYy3W4JgfA,33315
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- deepliif/models/__init__.py,sha256=sNIj6fr0HRfC2kqQ4MtwyKfHDi1sf-cdmi6UgvK4lNQ,34197
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+ deepliif/models/__init__.py,sha256=FLMYnTyF4XvsSqN11df4a7dqFuB8-Nq4pQnTskL2DUE,34398
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  deepliif/models/att_unet.py,sha256=tqaFMNbGQUjXObOG309P76c7sIPxEvFR38EyuyHY40o,7116
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  deepliif/models/base_model.py,sha256=ZQBI-wVfDdu296HzB_YzQraE9oUwfyRlAolNlrMi-4g,16858
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  deepliif/models/networks.py,sha256=SclYeZ78U9ZSOhNrky764ZXB6muIqnHa6K0h_LDSCi0,36690
@@ -30,16 +31,17 @@ deepliif/options/base_options.py,sha256=m5UXY8MvjNcDisUWuiP228yoT27SsCh1bXS_Td6S
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  deepliif/options/processing_options.py,sha256=OnNT-ytoTQzetFiMEKrWvrsrhZlupRK4smcnIk0MbqY,2947
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  deepliif/options/test_options.py,sha256=4ZbQC5U-nTbUz8jvdDIbse5TK_mjw4D5yNjpVevWD5M,1114
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  deepliif/options/train_options.py,sha256=5eA_oxpRj2-HiuMMvC5-HLapxNFG_JXOQ3K132JjpR8,3580
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- deepliif/util/__init__.py,sha256=_b7-t5Z54CJJIy-moeKPPLFHg5BRCKgWo5V18WqRZVo,29146
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+ deepliif/util/__init__.py,sha256=srhHheHPy2w2AirI22HWHkb3Qn58p--Jl1Fbl5YlGqc,31541
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  deepliif/util/checks.py,sha256=xQirKbZxZErsAXc27M5miQUUyxptoIEJSDaUKv1nY7c,1371
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  deepliif/util/get_data.py,sha256=HaRoQYb2u0LUgLT7ES-w35AmJ4BrlBEJWU4Cok29pxI,3749
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  deepliif/util/html.py,sha256=RNAONZ4opP-bViahgmpSbHwOc6jXKQRnWRAVIaeIvac,3309
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  deepliif/util/image_pool.py,sha256=M89Hc7DblRWroNP71S9mAdRn7h3DrhPFPjqFxxZYSgw,2280
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+ deepliif/util/util - modified tensor_to_pil.py,sha256=fd2SeSuiWIuUIOx4FWhGGw8mP7zsfShlMM2l1tQAWQU,8438
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  deepliif/util/util.py,sha256=WV2a1Rt-McmZm3BKW7TqC2oAKkvxWhZvjofGSfY6y7s,6810
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  deepliif/util/visualizer.py,sha256=6E1sPbXdgLFB9mnPwtfEjm9O40viG4dfv5MyTpOQQpo,20210
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- deepliif-1.1.14.dist-info/LICENSE.md,sha256=HlZw_UPS6EtJimJ_Ci7xKh-S5Iubs0Z8y8E6EZ3ZNyE,956
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- deepliif-1.1.14.dist-info/METADATA,sha256=k4sMVqcfZ0B26XhwrueC903-Om3c5v1I99ynb873vEg,35195
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- deepliif-1.1.14.dist-info/WHEEL,sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18,92
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- deepliif-1.1.14.dist-info/entry_points.txt,sha256=f70-10j2q68o_rDlsE3hspnv4ejlDnXwwGZ9JJ-3yF4,37
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- deepliif-1.1.14.dist-info/top_level.txt,sha256=vLDK5YKmDz08E7PywuvEjAo7dM5rnIpsjR4c0ubQCnc,13
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- deepliif-1.1.14.dist-info/RECORD,,
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+ deepliif-1.2.0.dist-info/LICENSE.md,sha256=HlZw_UPS6EtJimJ_Ci7xKh-S5Iubs0Z8y8E6EZ3ZNyE,956
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+ deepliif-1.2.0.dist-info/METADATA,sha256=aotU9YHFS0Y9Cxz57c81Bz_CmBEuMfw_vmXvgjRwoy0,35267
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+ deepliif-1.2.0.dist-info/WHEEL,sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18,92
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+ deepliif-1.2.0.dist-info/entry_points.txt,sha256=f70-10j2q68o_rDlsE3hspnv4ejlDnXwwGZ9JJ-3yF4,37
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+ deepliif-1.2.0.dist-info/top_level.txt,sha256=vLDK5YKmDz08E7PywuvEjAo7dM5rnIpsjR4c0ubQCnc,13
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+ deepliif-1.2.0.dist-info/RECORD,,