debase 0.1.6__py3-none-any.whl → 0.1.7__py3-none-any.whl

debase/_version.py

@@ -1,3 +1,3 @@
 """Version information."""
 
-__version__ = "0.1.6"
+__version__ = "0.1.7"

debase/enzyme_lineage_extractor.py

@@ -1944,7 +1944,13 @@ def _merge_lineage_and_sequences(
     df = pd.merge(df_lin, df_seq, on="variant_id", how="left")
 
     # 2a. If we have unmatched sequences and a model, use Gemini to match them
+    log.info(f"Model available: {model is not None}, Sequences found: {len(df_seq)}")
     if model and len(df_seq) > 0:
+        # Log initial state
+        log.info(f"Merge attempt: {len(df_lin)} lineage entries, {len(df_seq)} sequences")
+        log.info(f"Lineage IDs: {df_lin['variant_id'].tolist()[:5]}...")
+        log.info(f"Sequence IDs: {df_seq['variant_id'].tolist()[:5]}...")
+        
         # Find lineage entries without sequences
         missing_seq = df['aa_seq'].isna() & df['dna_seq'].isna()
         unmatched_lineage = df[missing_seq]['variant_id'].tolist()

{debase-0.1.6.dist-info → debase-0.1.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: debase
-Version: 0.1.6
+Version: 0.1.7
 Summary: Enzyme lineage analysis and sequence extraction package
 Home-page: https://github.com/YuemingLong/DEBase
 Author: DEBase Team

{debase-0.1.6.dist-info → debase-0.1.7.dist-info}/RECORD

@@ -1,17 +1,17 @@
 debase/PIPELINE_FLOW.md,sha256=S4nQyZlX39-Bchw1gQWPK60sHiFpB1eWHqo5GR9oTY8,4741
 debase/__init__.py,sha256=YeKveGj_8fwuu5ozoK2mUU86so_FjiCwsvg1d_lYVZU,586
 debase/__main__.py,sha256=LbxYt2x9TG5Ced7LpzzX_8gkWyXeZSlVHzqHfqAiPwQ,160
-debase/_version.py,sha256=0-ypEiBe2kUuZ71tMon-TVN7tQNbXA_-yM2NzlyMWuk,49
+debase/_version.py,sha256=vPJKuOkG3cFKZEVbwdNnidjitp6bll8M7nfNUPqx6YA,49
 debase/build_db.py,sha256=bW574GxsL1BJtDwM19urLbciPcejLzfraXZPpzm09FQ,7167
 debase/cleanup_sequence.py,sha256=QyhUqvTBVFTGM7ebAHmP3tif3Jq-8hvoLApYwAJtpH4,32702
-debase/enzyme_lineage_extractor.py,sha256=_kVsuOXOR8qhrOIy3mKNJuac3joK6goke628nAJoj88,94183
+debase/enzyme_lineage_extractor.py,sha256=7RWogFelrFcwAUup1MgJuiozjEbBc3ri2F2UV3eTEig,94544
 debase/lineage_format.py,sha256=mACni9M1RXA_1tIyDZJpStQoutd_HLG2qQMAORTusZs,30045
 debase/reaction_info_extractor.py,sha256=6wWj4IyUNSugNjxpwMGjABSAp68yHABaz_7ZRjh9GEk,112162
 debase/substrate_scope_extractor.py,sha256=dbve8q3K7ggA3A6EwB-KK9L19BnMNgPZMZ05G937dSY,82262
 debase/wrapper.py,sha256=lTx375a57EVuXcZ_roXaj5UDj8HjRcb5ViNaSgPN4Ik,10352
-debase-0.1.6.dist-info/licenses/LICENSE,sha256=5sk9_tcNmr1r2iMIUAiioBo7wo38u8BrPlO7f0seqgE,1075
-debase-0.1.6.dist-info/METADATA,sha256=mLzMY4LQx3SoOsirAiKhcqMofiMZ_D7jjB68ohUplFI,10789
-debase-0.1.6.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-debase-0.1.6.dist-info/entry_points.txt,sha256=hUcxA1b4xORu-HHBFTe9u2KTdbxPzt0dwz95_6JNe9M,48
-debase-0.1.6.dist-info/top_level.txt,sha256=2BUeq-4kmQr0Rhl06AnRzmmZNs8WzBRK9OcJehkcdk8,7
-debase-0.1.6.dist-info/RECORD,,
+debase-0.1.7.dist-info/licenses/LICENSE,sha256=5sk9_tcNmr1r2iMIUAiioBo7wo38u8BrPlO7f0seqgE,1075
+debase-0.1.7.dist-info/METADATA,sha256=Dj6i6WqC3QFJxXZyPQT7e27Aq8Hrrclu-44KadmYQJ0,10789
+debase-0.1.7.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+debase-0.1.7.dist-info/entry_points.txt,sha256=hUcxA1b4xORu-HHBFTe9u2KTdbxPzt0dwz95_6JNe9M,48
+debase-0.1.7.dist-info/top_level.txt,sha256=2BUeq-4kmQr0Rhl06AnRzmmZNs8WzBRK9OcJehkcdk8,7
+debase-0.1.7.dist-info/RECORD,,