ddi-fw 0.0.76__py3-none-any.whl → 0.0.78__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- ddi_fw/experiments/__init__.py +1 -1
- ddi_fw/experiments/ml_helper.py +5 -5
- ddi_fw/experiments/ml_pt.py +2 -2
- ddi_fw/experiments/ml_tf.py +2 -2
- {ddi_fw-0.0.76.dist-info → ddi_fw-0.0.78.dist-info}/METADATA +4 -4
- {ddi_fw-0.0.76.dist-info → ddi_fw-0.0.78.dist-info}/RECORD +8 -8
- {ddi_fw-0.0.76.dist-info → ddi_fw-0.0.78.dist-info}/WHEEL +0 -0
- {ddi_fw-0.0.76.dist-info → ddi_fw-0.0.78.dist-info}/top_level.txt +0 -0
ddi_fw/experiments/__init__.py
CHANGED
@@ -2,4 +2,4 @@ from .tensorflow_helper import TFMultiModal, TFSingleModal,Result
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from .evaluation_helper import evaluate, Metrics
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from .pipeline import Experiment
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from .pipeline_ner import NerParameterSearch
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from .ml_helper import
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from .ml_helper import ModelWrapper,MultiModalRunner
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ddi_fw/experiments/ml_helper.py
CHANGED
@@ -1,7 +1,7 @@
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from typing import Dict, List, Tuple
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from matplotlib import pyplot as plt
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from ddi_fw.experiments.ml_pt import
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from ddi_fw.experiments.ml_tf import
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from ddi_fw.experiments.ml_pt import PTModelWrapper
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from ddi_fw.experiments.ml_tf import TFModelWrapper
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import tensorflow as tf
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from tensorflow import keras
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from keras.models import Model, Sequential
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@@ -40,7 +40,7 @@ class Result:
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self.metric_dict[key] = metrics
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class
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class ModelWrapper:
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def __init__(self, date, descriptor, model_func, batch_size=128, epochs=100):
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self.date = date
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self.descriptor = descriptor
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@@ -78,9 +78,9 @@ class MultiModalRunner:
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def __create_multi_modal(self,library):
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if library == 'tensorflow':
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return
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return TFModelWrapper
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elif library == 'pytorch':
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return
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return PTModelWrapper
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else:
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raise ValueError("Unsupported library type. Choose 'tensorflow' or 'pytorch'.")
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ddi_fw/experiments/ml_pt.py
CHANGED
@@ -1,10 +1,10 @@
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import mlflow
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import torch
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from ddi_fw.experiments.ml_helper import
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from ddi_fw.experiments.ml_helper import ModelWrapper
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from ddi_fw.experiments.evaluation_helper import evaluate
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class
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class PTModelWrapper(ModelWrapper):
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def __init__(self, date, descriptor, model_func, batch_size=128, epochs=100, **kwargs):
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super().__init__(date, descriptor, model_func, batch_size, epochs)
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self.optimizer = kwargs['optimizer']
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ddi_fw/experiments/ml_tf.py
CHANGED
@@ -1,6 +1,6 @@
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from typing import Dict, List, Tuple
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from matplotlib import pyplot as plt
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from ddi_fw.experiments.ml_helper import
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from ddi_fw.experiments.ml_helper import ModelWrapper
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import tensorflow as tf
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from tensorflow import keras
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from keras.models import Model, Sequential
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@@ -23,7 +23,7 @@ import itertools
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import ddi_fw.utils as utils
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class
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class TFModelWrapper(ModelWrapper):
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# https://github.com/mlflow/mlflow/blob/master/examples/tensorflow/train.py
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def predict(self):
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print(self.train_data.shape)
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.1
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Name: ddi_fw
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Version: 0.0.
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Version: 0.0.78
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Summary: Do not use :)
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Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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@@ -24,8 +24,8 @@ Requires-Python: >=3.10
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Description-Content-Type: text/markdown
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Requires-Dist: importlib-resources==6.4.5
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Requires-Dist: python-stopwatch==1.1.11
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Requires-Dist: lxml==
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Requires-Dist: matplotlib==3.
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Requires-Dist: lxml==5.3.0
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Requires-Dist: matplotlib==3.8.0
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Requires-Dist: mlflow==2.16.1
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Requires-Dist: nltk==3.8.1
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Requires-Dist: numpy==1.26.4
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@@ -39,7 +39,7 @@ Requires-Dist: sentence-transformers==3.0.1
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Requires-Dist: transformers==4.42.4
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Requires-Dist: stanza==1.9.2
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Requires-Dist: tokenizers==0.19.1
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Requires-Dist: tqdm==4.66.
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Requires-Dist: tqdm==4.66.6
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Requires-Dist: xmlschema==3.4.2
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Requires-Dist: zipp==3.20.2
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Requires-Dist: py7zr==0.22.0
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@@ -55,12 +55,12 @@ ddi_fw/drugbank/drugbank_parser.py,sha256=lxUuhB0s8ef_aPNDs0V8ClKF7-KIWugNIV9gVs
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ddi_fw/drugbank/drugbank_processor.py,sha256=vmkt68n9nFLevufgGyXhOSDtTo4G1XzwT9PVncGTXtk,18127
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ddi_fw/drugbank/drugbank_processor_org.py,sha256=eO5Yset50P91qkic79RUXPoEuxRxQKFkKW0l4G29Mas,13322
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ddi_fw/drugbank/event_extractor.py,sha256=6odoZohhK7OdLF-LF0l-5BFq0_NMG_5jrFJbHrBXsI8,4600
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ddi_fw/experiments/__init__.py,sha256=
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ddi_fw/experiments/__init__.py,sha256=QVWBpJ9x45GJmW5vM5YwpkASr5Dam88-P5DwzcdSsLs,249
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ddi_fw/experiments/custom_torch_model.py,sha256=iQ_R_EApzD2JCcASN8cie6D21oh7VCxaOQ45_dkiGwc,2576
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ddi_fw/experiments/evaluation_helper.py,sha256=o4-w5Xa3t4olLW4ymx_8L-Buhe5wfQEmT2bh4Zz544c,13066
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ddi_fw/experiments/ml_helper.py,sha256=
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ddi_fw/experiments/ml_pt.py,sha256=
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ddi_fw/experiments/ml_tf.py,sha256=
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ddi_fw/experiments/ml_helper.py,sha256=1mH6IFhOG4eZ-GueTa_-8V9OATapWp_VclnCCpVwnnE,5473
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ddi_fw/experiments/ml_pt.py,sha256=VHKegdX5-RyUpNN_l6XxMc2ZrSQg4h8uuQALInQXkRg,3730
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ddi_fw/experiments/ml_tf.py,sha256=flOsVxCrok5zIlT4OHbk3NzEhtgyybMAQOENI6Itn9I,5791
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ddi_fw/experiments/pipeline.py,sha256=4ltPCcfLZ1fFpiOd8ahPognI6NLmRLzJvUqyFpn3z18,5693
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ddi_fw/experiments/pipeline_builder_pattern.py,sha256=w6x7ietk4vONCAvUfssPycaRUQIYUJsbCNNj3BTASBI,5454
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ddi_fw/experiments/pipeline_ner.py,sha256=unxEJCYrG6wEZjLmqvGdLRTMOBwELbGKkdygSpAR3b8,5043
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@@ -89,7 +89,7 @@ ddi_fw/utils/enums.py,sha256=19eJ3fX5eRK_xPvkYcukmug144jXPH4X9zQqtsFBj5A,671
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ddi_fw/utils/py7zr_helper.py,sha256=gOqaFIyJvTjUM-btO2x9AQ69jZOS8PoKN0wetYIckJw,4747
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ddi_fw/utils/utils.py,sha256=szwnxMTDRrZoeNRyDuf3aCbtzriwtaRk4mHSH3asLdA,4301
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ddi_fw/utils/zip_helper.py,sha256=YRZA4tKZVBJwGQM0_WK6L-y5MoqkKoC-nXuuHK6CU9I,5567
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ddi_fw-0.0.
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ddi_fw-0.0.
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ddi_fw-0.0.
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ddi_fw-0.0.
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ddi_fw-0.0.78.dist-info/METADATA,sha256=2nUPcQaInXGSs6zh6fqhDHkvyyeql-B0pdXGsfAoE6Y,1966
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ddi_fw-0.0.78.dist-info/WHEEL,sha256=P9jw-gEje8ByB7_hXoICnHtVCrEwMQh-630tKvQWehc,91
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ddi_fw-0.0.78.dist-info/top_level.txt,sha256=PMwHICFZTZtcpzQNPV4UQnfNXYIeLR_Ste-Wfc1h810,7
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ddi_fw-0.0.78.dist-info/RECORD,,
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File without changes
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