ddi-fw 0.0.33__py3-none-any.whl → 0.0.35__py3-none-any.whl

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Files changed (6) hide show
  1. ddi_fw/datasets/core.py +2 -2
  2. ddi_fw/datasets/ddi_mdl/base.py +2 -2
  3. {ddi_fw-0.0.33.dist-info → ddi_fw-0.0.35.dist-info}/METADATA +1 -1
  4. {ddi_fw-0.0.33.dist-info → ddi_fw-0.0.35.dist-info}/RECORD +6 -6
  5. {ddi_fw-0.0.33.dist-info → ddi_fw-0.0.35.dist-info}/WHEEL +0 -0
  6. {ddi_fw-0.0.33.dist-info → ddi_fw-0.0.35.dist-info}/top_level.txt +0 -0
ddi_fw/datasets/core.py CHANGED
@@ -363,7 +363,7 @@ class BaseDataset(ABC):
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  # return np.hstack(
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  # (value[row['id1']], value[row['id2']]), dtype=np.float16)
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- def x_fnc(row, embedding_values, embedding_column):
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+ def x_fnc(row, embedding_column):
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  v1 = self.embedding_dict[embedding_column][row['id1']]
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  v2 = self.embedding_dict[embedding_column][row['id2']]
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  return np.float16(np.hstack(
@@ -380,7 +380,7 @@ class BaseDataset(ABC):
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  print(f"concat {embedding_column} embeddings")
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  # column_embeddings_dict = embedding_values[embedding_column]
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  self.ddis_df[embedding_column+'_embedding'] = self.ddis_df.apply(
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- x_fnc, args=(embedding_values, embedding_column), axis=1)
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+ x_fnc, args=(embedding_column), axis=1)
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  self.dataframe = self.ddis_df.copy()
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  self.dataframe['class'] = list(classes)
ddi_fw/datasets/ddi_mdl/base.py CHANGED
@@ -8,7 +8,7 @@ HERE = pathlib.Path(__file__).resolve().parent
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  class DDIMDLDataset(BaseDataset):
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- def __init__(self, embedding_dict, ner_def, chemical_property_columns=['enzyme',
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+ def __init__(self, embedding_dict, ner_df, chemical_property_columns=['enzyme',
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  'target',
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  'pathway',
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  'smile'],
@@ -16,7 +16,7 @@ class DDIMDLDataset(BaseDataset):
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  ner_columns=[],
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  **kwargs):
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- super().__init__(embedding_dict,ner_def, chemical_property_columns, embedding_columns,
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+ super().__init__(embedding_dict,ner_df, chemical_property_columns, embedding_columns,
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  ner_columns, **kwargs)
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  # kwargs = {'index_path': str(HERE.joinpath('indexes'))}
{ddi_fw-0.0.33.dist-info → ddi_fw-0.0.35.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: ddi_fw
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- Version: 0.0.33
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+ Version: 0.0.35
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
{ddi_fw-0.0.33.dist-info → ddi_fw-0.0.35.dist-info}/RECORD RENAMED
@@ -1,12 +1,12 @@
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  ddi_fw/datasets/__init__.py,sha256=gkzHCU9-BL_bOU-RvvwdOIp_DhKRfXKU5SvgfQLVTds,505
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- ddi_fw/datasets/core.py,sha256=AHGFo5dEbvwDt9kQTeiBuVPAGfG6I4cawc-e2wNm04c,18126
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+ ddi_fw/datasets/core.py,sha256=DbNTZmGxn4oeSSAPdhH8zf6g-5VgoPivfQwAtBYdcAg,18090
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  ddi_fw/datasets/db_utils.py,sha256=OTsa3d-Iic7z3HmzSQK9UigedRbHDxYChJk0s4GfLnw,6191
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  ddi_fw/datasets/embedding_generator.py,sha256=Jqrlv88RCu0Lg812KsA12X0cSaZuxbckJ4LNRKNy_qw,2173
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  ddi_fw/datasets/embedding_generator_new.py,sha256=GExjmBysPWkmFxTZQPs2yEmDdFllZ-qC9lhZeRQAfbQ,4320
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  ddi_fw/datasets/feature_vector_generation.py,sha256=dxTHvp6uTkao9PdThs116Q3bWw_WTo9T8WigVL4G01s,3245
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  ddi_fw/datasets/idf_helper.py,sha256=_Gd1dtDSLaw8o-o0JugzSKMt9FpeXewTh4wGEaUd4VQ,2571
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  ddi_fw/datasets/setup_._py,sha256=khYVJuW5PlOY_i_A16F3UbSZ6s6o_ljw33Byw3C-A8E,1047
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- ddi_fw/datasets/ddi_mdl/base.py,sha256=NQl0AM-s7ZpbTdfBkCTNl2_sn0F8IabsgT_B8lxSh_Y,2475
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+ ddi_fw/datasets/ddi_mdl/base.py,sha256=zKwxVXI-vVB2FcSHcgiXH-vfVjFPJsbm6c_ZZ1tqyvg,2473
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  ddi_fw/datasets/ddi_mdl/readme.md,sha256=WC6lpmsEKvIISnZqENY7TWtzCQr98HPpE3oRsBl8pIw,625
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  ddi_fw/datasets/ddi_mdl/data/event.db,sha256=cmlSsf9MYjRzqR-mw3cUDnTnfT6FkpOG2yCl2mMwwew,30580736
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  ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt,sha256=XVlDqYATckrQwNSXqMSKVBqyoN_Hg8SK6CL-XMdLADY,102176
@@ -80,7 +80,7 @@ ddi_fw/utils/enums.py,sha256=19eJ3fX5eRK_xPvkYcukmug144jXPH4X9zQqtsFBj5A,671
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  ddi_fw/utils/py7zr_helper.py,sha256=rWhz3Trj6bk6B24hMuff1fKdRbC0yuvaHFlL8-eaAhg,4450
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  ddi_fw/utils/utils.py,sha256=Na6Y8mY-CFbQjrgd9xC8agcrjVvTj_7KIXqFm1H_3qU,3549
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  ddi_fw/utils/zip_helper.py,sha256=YRZA4tKZVBJwGQM0_WK6L-y5MoqkKoC-nXuuHK6CU9I,5567
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- ddi_fw-0.0.33.dist-info/METADATA,sha256=Tdnh-C8JS3O22oA7zX-7_TNo7xWmmlGTvRGVRkZN8T8,1563
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- ddi_fw-0.0.33.dist-info/WHEEL,sha256=5Mi1sN9lKoFv_gxcPtisEVrJZihrm_beibeg5R6xb4I,91
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- ddi_fw-0.0.33.dist-info/top_level.txt,sha256=PMwHICFZTZtcpzQNPV4UQnfNXYIeLR_Ste-Wfc1h810,7
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- ddi_fw-0.0.33.dist-info/RECORD,,
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+ ddi_fw-0.0.35.dist-info/METADATA,sha256=_VVWhz49MppA95FRWQctsYfT8koX9VF2xnNBqrphL3w,1563
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+ ddi_fw-0.0.35.dist-info/WHEEL,sha256=5Mi1sN9lKoFv_gxcPtisEVrJZihrm_beibeg5R6xb4I,91
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+ ddi_fw-0.0.35.dist-info/top_level.txt,sha256=PMwHICFZTZtcpzQNPV4UQnfNXYIeLR_Ste-Wfc1h810,7
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+ ddi_fw-0.0.35.dist-info/RECORD,,