ddi-fw 0.0.2__py3-none-any.whl → 0.0.3__py3-none-any.whl

ddi_fw/datasets/core.py

@@ -5,12 +5,12 @@ from abc import ABC, abstractmethod
 import numpy as np
 import pandas as pd
 import pathlib
-from datasets.idf_helper import IDF
+from ddi_fw.datasets.idf_helper import IDF
 
-from utils.zip_helper import ZipHelper
+from ddi_fw.utils.zip_helper import ZipHelper
 from .feature_vector_generation import SimilarityMatrixGenerator, VectorGenerator
 from ner.ner import CTakesNER
-from utils import create_folder_if_not_exists
+from ddi_fw.utils import create_folder_if_not_exists
 from stopwatch import Stopwatch, profile
 
 HERE = pathlib.Path(__file__).resolve().parent

ddi_fw/drugbank/drugbank_parser.py

@@ -12,7 +12,7 @@ import sys
 import unicodedata
 import re
 
-from utils import ZipHelper
+from ddi_fw.utils import ZipHelper
 
 
 def slugify(value, allow_unicode=False):

ddi_fw/drugbank/drugbank_processor.py

@@ -10,10 +10,10 @@ import csv
 from rdkit import Chem
 from rdkit.Chem import AllChem
 import numpy as np
-from drugbank.event_extractor import EventExtractor
+from ddi_fw.drugbank.event_extractor import EventExtractor
 from ner.ner import CTakesNER
 
-from utils import ZipHelper
+from ddi_fw.utils import ZipHelper
 # from event_extractor import EventExtractor
 
 

ddi_fw/drugbank/drugbank_processor_org.py

@@ -9,7 +9,7 @@ import csv
 from rdkit import Chem
 from rdkit.Chem import AllChem
 import numpy as np
-from drugbank.event_extractor import EventExtractor
+from ddi_fw.drugbank.event_extractor import EventExtractor
 
 from zip_helper import ZipHelper
 # from event_extractor import EventExtractor
@@ -22,7 +22,7 @@ def multiline_to_singleline(multiline):
 
 # targets -> target -> polypeptide
 # enzymes -> enzyme -> polypeptide
-# pathways from KEGG, KEGG ID is obtained from DrugBank
+# pathways from KEGG, KEGG ID is obtained from ddi_fw.drugbank
 # https://www.genome.jp/dbget-bin/www_bget?drug:D03136
 # https://www.kegg.jp/entry/D03136
 

ddi_fw/experiments/tensorflow_helper.py

@@ -12,7 +12,7 @@ from mlflow.utils.autologging_utils import batch_metrics_logger
 import time
 
 from mlflow.models import infer_signature
-from experiments.evaluation_helper import evaluate
+from ddi_fw.experiments.evaluation_helper import evaluate
 
 import tf2onnx
 import onnx

ddi_fw/ner/ner.py

@@ -11,7 +11,7 @@ import os
 import requests
 # from mmlrestclient as metamapliteclient
 from enum import Enum
-from utils import create_folder_if_not_exists
+from ddi_fw.utils import create_folder_if_not_exists
 
 
 # data = '''

{ddi_fw-0.0.2.dist-info → ddi_fw-0.0.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: ddi-fw
-Version: 0.0.2
+Version: 0.0.3
 Summary: Do not use :)
 Home-page: UNKNOWN
 Author: Kıvanç Bayraktar

{ddi_fw-0.0.2.dist-info → ddi_fw-0.0.3.dist-info}/RECORD

@@ -1,28 +1,28 @@
 ddi_fw/datasets/__init__.py,sha256=WmupqKInz9XMorCAUFS_iUZoSB56xasTrC8eb0UlCVk,540
-ddi_fw/datasets/core.py,sha256=O4lbhaiGkvbiGHS_Eubh6RqktBoGHjQnfSSrakdkfUU,18397
+ddi_fw/datasets/core.py,sha256=4b8ai37BpQwFeE1x1saD-YP_RN_h8-LrG5o9Sh4lQik,18418
 ddi_fw/datasets/db_utils.py,sha256=OTsa3d-Iic7z3HmzSQK9UigedRbHDxYChJk0s4GfLnw,6191
 ddi_fw/datasets/embedding_generator.py,sha256=Jqrlv88RCu0Lg812KsA12X0cSaZuxbckJ4LNRKNy_qw,2173
 ddi_fw/datasets/embedding_generator_new.py,sha256=GExjmBysPWkmFxTZQPs2yEmDdFllZ-qC9lhZeRQAfbQ,4320
 ddi_fw/datasets/feature_vector_generation.py,sha256=dxTHvp6uTkao9PdThs116Q3bWw_WTo9T8WigVL4G01s,3245
 ddi_fw/datasets/idf_helper.py,sha256=_Gd1dtDSLaw8o-o0JugzSKMt9FpeXewTh4wGEaUd4VQ,2571
 ddi_fw/drugbank/__init__.py,sha256=4_eKdZsnXUSJyr-TZpHwIn13JC6PqS5imeLJJbgt2-A,94
-ddi_fw/drugbank/drugbank_parser.py,sha256=-ktqXKX-o68VShmfYkxI-5WMzwNQQiw_h5CF1fnwWQU,5450
-ddi_fw/drugbank/drugbank_processor.py,sha256=q9J4piFicDu7U5gjZztOVcSLkjjpylyPdM_qeHSne8w,17671
-ddi_fw/drugbank/drugbank_processor_org.py,sha256=hKyeunj6bNFHD9SmWM-a-eOp_NRyD0RIPoV8tzkbGAk,13308
+ddi_fw/drugbank/drugbank_parser.py,sha256=Zc-WXCqE6cjaPpXmDSFYZWZgckTrhEHl5PW9ZNxtbcs,5457
+ddi_fw/drugbank/drugbank_processor.py,sha256=guH586c92wBjVZlfpYQlJ4KxAewTLvte-vcpUSlqWZY,17685
+ddi_fw/drugbank/drugbank_processor_org.py,sha256=eO5Yset50P91qkic79RUXPoEuxRxQKFkKW0l4G29Mas,13322
 ddi_fw/drugbank/event_extractor.py,sha256=6odoZohhK7OdLF-LF0l-5BFq0_NMG_5jrFJbHrBXsI8,4600
 ddi_fw/experiments/__init__.py,sha256=UJwd2i3QcuaI1YjC_2yGCiLuEMTT5Yo7rDFxw89chIw,108
 ddi_fw/experiments/custom_torch_model.py,sha256=iQ_R_EApzD2JCcASN8cie6D21oh7VCxaOQ45_dkiGwc,2576
 ddi_fw/experiments/evaluation_helper.py,sha256=pY69cezV3WzrXw1bduIwRJfah1w3wXJ2YyTNim1J7ko,9349
-ddi_fw/experiments/tensorflow_helper.py,sha256=xYWCWa_ixSHnQFlDJ6mM0TY_fJCvV_FuFi0oUszLfwo,12634
+ddi_fw/experiments/tensorflow_helper.py,sha256=FnwF0UHb-5gUDC8FsXognq8gFyRaWMz9khASAUIe0Hk,12641
 ddi_fw/experiments/test.py,sha256=rf7UB2SUZR2-UL_IVOm8_8NOY9__2dVGlUbct5tqf-0,1981
 ddi_fw/ner/__init__.py,sha256=JwhGXrepomxPSsGsg2b_xPRC72AjvxOIn2CW5Mvscn0,26
 ddi_fw/ner/mmlrestclient.py,sha256=NZta7m2Qm6I_qtVguMZhqtAUjVBmmXn0-TMnsNp0jpg,6859
-ddi_fw/ner/ner.py,sha256=9-77KkeikXbuHoOBFTrTT5MMKxpJkh6HwNVGbl9ttIQ,15856
+ddi_fw/ner/ner.py,sha256=BEs9AFljAxOQrC2BEP1raSzRoypcfELS5UTdl4bjTqw,15863
 ddi_fw/utils/__init__.py,sha256=nhNU_sEp55xsZ5VtvhozjKg6r4GWP6SJI13v8F_jbCg,217
 ddi_fw/utils/enums.py,sha256=19eJ3fX5eRK_xPvkYcukmug144jXPH4X9zQqtsFBj5A,671
 ddi_fw/utils/utils.py,sha256=Na6Y8mY-CFbQjrgd9xC8agcrjVvTj_7KIXqFm1H_3qU,3549
 ddi_fw/utils/zip_helper.py,sha256=DjtwcGBoYw8zOP-Ye5OxzeR1OgN3WfNkVx85nb0wbJA,2635
-ddi_fw-0.0.2.dist-info/METADATA,sha256=hGGcfch-mbi1irldvZm8nr9ukLgwGDmgWAK75zOYwSU,391
-ddi_fw-0.0.2.dist-info/WHEEL,sha256=eOLhNAGa2EW3wWl_TU484h7q1UNgy0JXjjoqKoxAAQc,92
-ddi_fw-0.0.2.dist-info/top_level.txt,sha256=Lfsqipq5Jm60ALnmFA_cdNfpVfzBJlKM0GiQ_sB8KGE,75
-ddi_fw-0.0.2.dist-info/RECORD,,
+ddi_fw-0.0.3.dist-info/METADATA,sha256=EpE1WfQ2EviFaJolYzdkAlBlmAMH-RDrrzx3SKk_Jws,391
+ddi_fw-0.0.3.dist-info/WHEEL,sha256=eOLhNAGa2EW3wWl_TU484h7q1UNgy0JXjjoqKoxAAQc,92
+ddi_fw-0.0.3.dist-info/top_level.txt,sha256=Lfsqipq5Jm60ALnmFA_cdNfpVfzBJlKM0GiQ_sB8KGE,75
+ddi_fw-0.0.3.dist-info/RECORD,,