ddi-fw 0.0.220__py3-none-any.whl → 0.0.222__py3-none-any.whl

ddi_fw/datasets/ddi_mdl/base.py

@@ -36,8 +36,8 @@ HERE = pathlib.Path(__file__).resolve().parent
 
 class DDIMDLDataset(BaseDataset,TextDatasetMixin):
     dataset_name: str = "DDIMDLDataset"
-    index_path: str = Field(default_factory=lambda: str(
-        pathlib.Path(__file__).resolve().parent.joinpath('indexes')))
+    # index_path: str = Field(default_factory=lambda: str(
+    #     pathlib.Path(__file__).resolve().parent.joinpath('indexes')))
     # drugs_df: pd.DataFrame = Field(default_factory=pd.DataFrame)
     # ddis_df: pd.DataFrame = Field(default_factory=pd.DataFrame)
     drugs_df: Optional[pd.DataFrame] = None
@@ -65,7 +65,8 @@ class DDIMDLDataset(BaseDataset,TextDatasetMixin):
     def __init__(self, **kwargs):
 
         super().__init__(**kwargs)
-        
+        self.index_path: str = Field(default_factory=lambda: str(
+        pathlib.Path(__file__).resolve().parent.joinpath('indexes')))
         # self.additional_config = kwargs.get('dataset_additional_config', {})
         if self.additional_config:
             ner = self.additional_config.get('ner', {})

ddi_fw/datasets/mdf_sa_ddi/base.py

@@ -90,8 +90,8 @@ class MDFSADDIDataset(BaseDataset,TextDatasetMixin):
     #     self.index_path = kwargs.get('index_path')
     
     dataset_name: str = "MDFSADDIDataset"
-    index_path: str = Field(default_factory=lambda: str(
-        pathlib.Path(__file__).resolve().parent.joinpath('indexes')))
+    # index_path: str = Field(default_factory=lambda: str(
+    #     pathlib.Path(__file__).resolve().parent.joinpath('indexes')))
     # drugs_df: pd.DataFrame = Field(default_factory=pd.DataFrame)
     # ddis_df: pd.DataFrame = Field(default_factory=pd.DataFrame)
     drugs_df: Optional[pd.DataFrame] = None
@@ -119,7 +119,9 @@ class MDFSADDIDataset(BaseDataset,TextDatasetMixin):
     def __init__(self, **kwargs):
 
         super().__init__(**kwargs)
-        
+        self.index_path: str = Field(default_factory=lambda: str(
+        pathlib.Path(__file__).resolve().parent.joinpath('indexes')))
+         
         # self.additional_config = kwargs.get('dataset_additional_config', {})
         if self.additional_config:
             ner = self.additional_config.get('ner', {})

ddi_fw/ml/tensorflow_wrapper.py

@@ -72,6 +72,7 @@ class TFModelWrapper(ModelWrapper):
     def fit_model(self, X_train, y_train, X_valid, y_valid):
         self.kwargs['input_shape'] = self.train_data.shape
         self.num_classes = len(np.unique(y_train, axis=0))
+        self.kwargs['num_classes'] = self.num_classes
         model = self.model_func(**self.kwargs)
         checkpoint = ModelCheckpoint(
             filepath=f'{self.descriptor}_validation.weights.h5',

{ddi_fw-0.0.220.dist-info → ddi_fw-0.0.222.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: ddi_fw
-Version: 0.0.220
+Version: 0.0.222
 Summary: Do not use :)
 Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
 Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>

{ddi_fw-0.0.220.dist-info → ddi_fw-0.0.222.dist-info}/RECORD

@@ -3,7 +3,7 @@ ddi_fw/datasets/core.py,sha256=PX6MX4hmeYxIWAKAx7NnJr1fpzR11xA8g8vAjYcQNN8,16936
 ddi_fw/datasets/dataset_splitter.py,sha256=8H8uZTAf8N9LUZeSeHOMawtJFJhnDgUUqFcnl7dquBQ,1672
 ddi_fw/datasets/db_utils.py,sha256=xRj28U_uXTRPHcz3yIICczFUHXUPiAOZtAj5BM6kH44,6465
 ddi_fw/datasets/setup_._py,sha256=khYVJuW5PlOY_i_A16F3UbSZ6s6o_ljw33Byw3C-A8E,1047
-ddi_fw/datasets/ddi_mdl/base.py,sha256=_45xa9oo5mBY5gooIy3hxlHBVJcx4NFRjzMCBIMllvA,11247
+ddi_fw/datasets/ddi_mdl/base.py,sha256=0fHiKtnbYrcucBRcR6fMOD1WZnZFeJ-uQXFtqJ7xnfg,11379
 ddi_fw/datasets/ddi_mdl/debug.log,sha256=eWz05j8RFqZuHFDTCF7Rck5w4rvtTanFN21iZsgxO7Y,115
 ddi_fw/datasets/ddi_mdl/readme.md,sha256=WC6lpmsEKvIISnZqENY7TWtzCQr98HPpE3oRsBl8pIw,625
 ddi_fw/datasets/ddi_mdl/data/event.db,sha256=cmlSsf9MYjRzqR-mw3cUDnTnfT6FkpOG2yCl2mMwwew,30580736
@@ -46,7 +46,7 @@ ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_2.txt,sha256=fFJbN0DbKH4mve
 ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_3.txt,sha256=NhiLF_5INQCpjOlE-RIxDKy7rYwksLdx60L6HCmDKoY,81247
 ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_4.txt,sha256=bPvMCJVy7jtcaYbR-5bmdB6s7gT8NSfK2wDC7iJ0O10,81308
 ddi_fw/datasets/mdf_sa_ddi/__init__.py,sha256=UEFBM92y2aJjlMJw4Jx405tOAwJ88r_nHAVgAszSjuo,68
-ddi_fw/datasets/mdf_sa_ddi/base.py,sha256=CRhcbADi_CkRyXY2Eq7fYXH-ywmDhrTTB67JLKbk8F4,15907
+ddi_fw/datasets/mdf_sa_ddi/base.py,sha256=rMfHf3pg-XL2zgGuwByDI5354udJ98xuZTj4_wufoGM,16050
 ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv,sha256=EOOLF_0vVVzShoofcGYlOzpztlM1m9jJdftepHicix4,25787699
 ddi_fw/datasets/mdf_sa_ddi/drug_information_del_noDDIxiaoyu50.csv,sha256=lpuMz5KxPsG6MKNuIIUmT5cZquWHQiIao8tXlmOHzq8,381321
 ddi_fw/datasets/mdf_sa_ddi/mdf-sa-ddi.zip,sha256=DfN8mczGvWba2y45cPqtWtXjUDXy49VOtRfpcb0tn8c,4382827
@@ -77,7 +77,7 @@ ddi_fw/ml/evaluation_helper.py,sha256=2-7CLSgGTqLEk4HkgCVIOt-GxfLAn6SBozJghAtHb5
 ddi_fw/ml/ml_helper.py,sha256=RbFUz4kLkqv6WUXXscDFtYBMWcmv7uWOf8YIR5DBfqA,7701
 ddi_fw/ml/model_wrapper.py,sha256=38uBdHI4H_sjDKPWuhGXovUy_L1tpSNm5tEqCtwmlpY,973
 ddi_fw/ml/pytorch_wrapper.py,sha256=pe6UsjP2XeTgLxDnIUiodoyhJTGCxV27wD4Cjxysu2Q,8553
-ddi_fw/ml/tensorflow_wrapper.py,sha256=Zdf1FmJ9488pFBG4xBLkC5GzyLv9tn5OrdFzHGHPmCM,16172
+ddi_fw/ml/tensorflow_wrapper.py,sha256=8hQitM6r0jVkSi4P5O4qjGYuJFT326JcojCrifVEF_M,16227
 ddi_fw/ml/tracking_service.py,sha256=eHWFI3lyQX_xM16CRekgITwldHj2RBMYl5XG8lD8Zks,7508
 ddi_fw/ner/__init__.py,sha256=JwhGXrepomxPSsGsg2b_xPRC72AjvxOIn2CW5Mvscn0,26
 ddi_fw/ner/mmlrestclient.py,sha256=NZta7m2Qm6I_qtVguMZhqtAUjVBmmXn0-TMnsNp0jpg,6859
@@ -101,7 +101,7 @@ ddi_fw/utils/zip_helper.py,sha256=YRZA4tKZVBJwGQM0_WK6L-y5MoqkKoC-nXuuHK6CU9I,55
 ddi_fw/vectorization/__init__.py,sha256=LcJOpLVoLvHPDw9phGFlUQGeNcST_zKV-Oi1Pm5h_nE,110
 ddi_fw/vectorization/feature_vector_generation.py,sha256=EBf-XAiwQwr68az91erEYNegfeqssBR29kVgrliIyac,4765
 ddi_fw/vectorization/idf_helper.py,sha256=_Gd1dtDSLaw8o-o0JugzSKMt9FpeXewTh4wGEaUd4VQ,2571
-ddi_fw-0.0.220.dist-info/METADATA,sha256=aL4O7w8j_5J-2IoLsB8JeXbfShqQftARKmLjiiu8u1Q,2631
-ddi_fw-0.0.220.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
-ddi_fw-0.0.220.dist-info/top_level.txt,sha256=PMwHICFZTZtcpzQNPV4UQnfNXYIeLR_Ste-Wfc1h810,7
-ddi_fw-0.0.220.dist-info/RECORD,,
+ddi_fw-0.0.222.dist-info/METADATA,sha256=WC33zHRr1ONe_rAX-dG4wf_LSc8L7qUOoEeki9PwvYY,2631
+ddi_fw-0.0.222.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
+ddi_fw-0.0.222.dist-info/top_level.txt,sha256=PMwHICFZTZtcpzQNPV4UQnfNXYIeLR_Ste-Wfc1h810,7
+ddi_fw-0.0.222.dist-info/RECORD,,