ddi-fw 0.0.155__py3-none-any.whl → 0.0.158__py3-none-any.whl

ddi_fw/datasets/ddi_mdl/base.py

@@ -60,7 +60,6 @@ class DDIMDLDataset(TextDatasetMixin):
         return values
 
     def __init__(self, **kwargs):
-        logger.info(f'{self.dataset_name} is being initialized')
 
         super().__init__(**kwargs)
         self.class_column = 'event_category'

ddi_fw/datasets/feature_vector_generation.py

@@ -35,7 +35,7 @@ class SimilarityMatrixGenerator:
         return jaccard_sim_matrix
 
     # https://github.com/YifanDengWHU/DDIMDL/blob/master/DDIMDL.py , def Jaccard(matrix):
-    def create_jaccard_similarity_matrices(self, matrix):
+    def create_jaccard_similarity_matrices(self, matrix)->np.ndarray:
         matrix = np.mat(matrix)
         numerator = matrix * matrix.T
         denominator = np.ones(np.shape(matrix)) * matrix.T + \

ddi_fw-0.0.158.dist-info/METADATA

@@ -0,0 +1,69 @@
+Metadata-Version: 2.4
+Name: ddi_fw
+Version: 0.0.158
+Summary: Do not use :)
+Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
+Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
+Keywords: Machine Learning
+Classifier: Development Status :: 1 - Planning
+Classifier: Environment :: Console
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Classifier: Framework :: Pytest
+Classifier: Framework :: tox
+Classifier: Framework :: Sphinx
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
+Classifier: Topic :: Scientific/Engineering :: Information Analysis
+Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+Requires-Dist: tqdm>=4.66.6
+Requires-Dist: pandas>=2.2.0
+Provides-Extra: llm
+Requires-Dist: sentence-transformers<=3.3.1,>=3.0.1; extra == "llm"
+Requires-Dist: transformers>=4.42.4; extra == "llm"
+Requires-Dist: stanza==1.9.2; extra == "llm"
+Requires-Dist: tokenizers>=0.19.1; extra == "llm"
+Requires-Dist: openai>=1.52.2; extra == "llm"
+Requires-Dist: langchain>=0.3.4; extra == "llm"
+Requires-Dist: langchain_community==0.3.3; extra == "llm"
+Provides-Extra: ml
+Requires-Dist: scikit-learn==1.5.2; extra == "ml"
+Requires-Dist: tensorflow<2.18.0,>=2.17.0; extra == "ml"
+Requires-Dist: tf-keras==2.17.0; extra == "ml"
+Requires-Dist: mlflow==2.16.1; extra == "ml"
+Requires-Dist: accelerate>=0.33.0; extra == "ml"
+Requires-Dist: numpy>=1.26.4; extra == "ml"
+Requires-Dist: scipy==1.13.1; extra == "ml"
+Requires-Dist: pandas>=2.2.0; extra == "ml"
+Requires-Dist: plotly==5.24.1; extra == "ml"
+Requires-Dist: matplotlib==3.8.0; extra == "ml"
+Requires-Dist: rdkit==2023.3.3; extra == "ml"
+Requires-Dist: datasets==3.0.2; extra == "ml"
+Requires-Dist: tqdm>=4.66.6; extra == "ml"
+Provides-Extra: datasets
+Requires-Dist: datasets==3.0.2; extra == "datasets"
+Requires-Dist: unstructured==0.16.3; extra == "datasets"
+Requires-Dist: py7zr==0.22.0; extra == "datasets"
+Requires-Dist: xmlschema==3.4.2; extra == "datasets"
+Provides-Extra: drugbank
+Requires-Dist: rdkit==2023.3.3; extra == "drugbank"
+Requires-Dist: openai>=1.52.2; extra == "drugbank"
+Provides-Extra: pipeline-and-ner
+Requires-Dist: nltk>=3.8.1; extra == "pipeline-and-ner"
+Requires-Dist: stanza==1.9.2; extra == "pipeline-and-ner"
+Requires-Dist: transformers>=4.42.4; extra == "pipeline-and-ner"
+Requires-Dist: sentence-transformers<=3.3.1,>=3.0.1; extra == "pipeline-and-ner"
+Requires-Dist: mlflow==2.16.1; extra == "pipeline-and-ner"
+Provides-Extra: utils
+Requires-Dist: pydantic==2.10.6; extra == "utils"
+Requires-Dist: python-stopwatch==1.1.11; extra == "utils"
+Requires-Dist: importlib-resources==6.4.5; extra == "utils"
+Requires-Dist: lxml==5.3.0; extra == "utils"
+Requires-Dist: pyarrow==17.0.0; extra == "utils"
+Requires-Dist: pycryptodomex==3.22.0; extra == "utils"

{ddi_fw-0.0.155.dist-info → ddi_fw-0.0.158.dist-info}/RECORD

@@ -3,10 +3,10 @@ ddi_fw/datasets/core.py,sha256=vRMpUsIHIbOKi-6TuUPNu1Ve3ny3cS9hdsydQxFCNvE,8078
 ddi_fw/datasets/dataset_splitter.py,sha256=8H8uZTAf8N9LUZeSeHOMawtJFJhnDgUUqFcnl7dquBQ,1672
 ddi_fw/datasets/db_utils.py,sha256=OTsa3d-Iic7z3HmzSQK9UigedRbHDxYChJk0s4GfLnw,6191
 ddi_fw/datasets/embedding_generator.py,sha256=jiDKwLaPMaQkloxQkuCrhl-A-2OdvocmkSzjWtUnk4g,2255
-ddi_fw/datasets/feature_vector_generation.py,sha256=gvjpEzkgVV8dp4V8NMMv59u0v-1tNAJ7v83R-keWGoA,4748
+ddi_fw/datasets/feature_vector_generation.py,sha256=Z1A_DOBqDFPqLN4YB-3oYlOQWJK-X6Oes6UFjpzR47Q,4760
 ddi_fw/datasets/idf_helper.py,sha256=_Gd1dtDSLaw8o-o0JugzSKMt9FpeXewTh4wGEaUd4VQ,2571
 ddi_fw/datasets/setup_._py,sha256=khYVJuW5PlOY_i_A16F3UbSZ6s6o_ljw33Byw3C-A8E,1047
-ddi_fw/datasets/ddi_mdl/base.py,sha256=hk2DC4Xj-7vYu6m1qTYuBS0s3KP7jBrhAjQJofHP0WU,9537
+ddi_fw/datasets/ddi_mdl/base.py,sha256=yLxNzDYjLekq1qE6mKh6WkzUU5Xvn3JBEET9Ed-7b_E,9471
 ddi_fw/datasets/ddi_mdl/debug.log,sha256=eWz05j8RFqZuHFDTCF7Rck5w4rvtTanFN21iZsgxO7Y,115
 ddi_fw/datasets/ddi_mdl/readme.md,sha256=WC6lpmsEKvIISnZqENY7TWtzCQr98HPpE3oRsBl8pIw,625
 ddi_fw/datasets/ddi_mdl/data/event.db,sha256=cmlSsf9MYjRzqR-mw3cUDnTnfT6FkpOG2yCl2mMwwew,30580736
@@ -97,7 +97,7 @@ ddi_fw/utils/package_helper.py,sha256=erl8_onmhK-41zQoaED2qyDUV9GQxmT9sdoyRp9_q5
 ddi_fw/utils/py7zr_helper.py,sha256=gOqaFIyJvTjUM-btO2x9AQ69jZOS8PoKN0wetYIckJw,4747
 ddi_fw/utils/utils.py,sha256=szwnxMTDRrZoeNRyDuf3aCbtzriwtaRk4mHSH3asLdA,4301
 ddi_fw/utils/zip_helper.py,sha256=YRZA4tKZVBJwGQM0_WK6L-y5MoqkKoC-nXuuHK6CU9I,5567
-ddi_fw-0.0.155.dist-info/METADATA,sha256=Eko-GWtTpFIvR_X4flADahxqTxPXYQ5Ei2TS8XuTEto,2082
-ddi_fw-0.0.155.dist-info/WHEEL,sha256=DK49LOLCYiurdXXOXwGJm6U4DkHkg4lcxjhqwRa0CP4,91
-ddi_fw-0.0.155.dist-info/top_level.txt,sha256=PMwHICFZTZtcpzQNPV4UQnfNXYIeLR_Ste-Wfc1h810,7
-ddi_fw-0.0.155.dist-info/RECORD,,
+ddi_fw-0.0.158.dist-info/METADATA,sha256=bF5QmH1M2hqitOK5Xriathg4yyngK5xshU8o8T3Iwns,3232
+ddi_fw-0.0.158.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
+ddi_fw-0.0.158.dist-info/top_level.txt,sha256=PMwHICFZTZtcpzQNPV4UQnfNXYIeLR_Ste-Wfc1h810,7
+ddi_fw-0.0.158.dist-info/RECORD,,

{ddi_fw-0.0.155.dist-info → ddi_fw-0.0.158.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (78.0.2)
+Generator: setuptools (78.1.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

ddi_fw-0.0.155.dist-info/METADATA

@@ -1,54 +0,0 @@
-Metadata-Version: 2.4
-Name: ddi_fw
-Version: 0.0.155
-Summary: Do not use :)
-Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
-Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
-Keywords: Machine Learning
-Classifier: Development Status :: 1 - Planning
-Classifier: Environment :: Console
-Classifier: Intended Audience :: Science/Research
-Classifier: License :: OSI Approved :: MIT License
-Classifier: Operating System :: OS Independent
-Classifier: Framework :: Pytest
-Classifier: Framework :: tox
-Classifier: Framework :: Sphinx
-Classifier: Programming Language :: Python
-Classifier: Programming Language :: Python :: 3.8
-Classifier: Programming Language :: Python :: 3 :: Only
-Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
-Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
-Classifier: Topic :: Scientific/Engineering :: Information Analysis
-Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
-Requires-Python: >=3.10
-Description-Content-Type: text/markdown
-Requires-Dist: pydantic==2.10.6
-Requires-Dist: importlib-resources==6.4.5
-Requires-Dist: python-stopwatch==1.1.11
-Requires-Dist: lxml==5.3.0
-Requires-Dist: matplotlib==3.8.0
-Requires-Dist: mlflow==2.16.1
-Requires-Dist: nltk>=3.8.1
-Requires-Dist: numpy>=1.26.4
-Requires-Dist: pandas>=2.2.0
-Requires-Dist: plotly==5.24.1
-Requires-Dist: rdkit==2023.3.3
-Requires-Dist: scikit-learn==1.5.2
-Requires-Dist: scipy==1.13.1
-Requires-Dist: accelerate>=0.33.0
-Requires-Dist: sentence-transformers<=3.3.1,>=3.0.1
-Requires-Dist: transformers>=4.42.4
-Requires-Dist: stanza==1.9.2
-Requires-Dist: tokenizers>=0.19.1
-Requires-Dist: tqdm>=4.66.6
-Requires-Dist: xmlschema==3.4.2
-Requires-Dist: zipp>=3.20.2
-Requires-Dist: py7zr==0.22.0
-Requires-Dist: openai>=1.52.2
-Requires-Dist: langchain>=0.3.4
-Requires-Dist: chromadb>=0.5.15
-Requires-Dist: langchain_community==0.3.3
-Requires-Dist: datasets==3.0.2
-Requires-Dist: unstructured==0.16.3
-Requires-Dist: tensorflow<2.18.0,>=2.17.0
-Requires-Dist: tf-keras==2.17.0