ddi-fw 0.0.154__py3-none-any.whl → 0.0.155__py3-none-any.whl

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Files changed (6) hide show
  1. ddi_fw/datasets/ddi_mdl/base.py +6 -0
  2. ddi_fw/pipeline/multi_pipeline.py +2 -0
  3. {ddi_fw-0.0.154.dist-info → ddi_fw-0.0.155.dist-info}/METADATA +1 -1
  4. {ddi_fw-0.0.154.dist-info → ddi_fw-0.0.155.dist-info}/RECORD +6 -6
  5. {ddi_fw-0.0.154.dist-info → ddi_fw-0.0.155.dist-info}/WHEEL +0 -0
  6. {ddi_fw-0.0.154.dist-info → ddi_fw-0.0.155.dist-info}/top_level.txt +0 -0
ddi_fw/datasets/ddi_mdl/base.py CHANGED
@@ -15,6 +15,9 @@ from abc import ABC, abstractmethod
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  from sklearn.preprocessing import LabelBinarizer
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  from sklearn.model_selection import KFold, StratifiedKFold, train_test_split
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+ import logging
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+
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+ logger = logging.getLogger(__name__)
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  # Constants for embedding, chemical properties, and NER columns
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  LIST_OF_EMBEDDING_COLUMNS = [
@@ -57,6 +60,8 @@ class DDIMDLDataset(TextDatasetMixin):
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  return values
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  def __init__(self, **kwargs):
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+ logger.info(f'{self.dataset_name} is being initialized')
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+
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  super().__init__(**kwargs)
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  self.class_column = 'event_category'
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  _db_path = HERE.joinpath('data/event.db')
@@ -67,6 +72,7 @@ class DDIMDLDataset(TextDatasetMixin):
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  # TODO with resource
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  self._conn = create_connection(_db_path.absolute().as_posix())
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  self.load_drugs_and_events()
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+ logger.info(f'{self.dataset_name} is initialized')
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  def load_drugs_and_events(self):
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  self.drugs_df = self.__select_all_drugs_as_dataframe__()
ddi_fw/pipeline/multi_pipeline.py CHANGED
@@ -68,6 +68,7 @@ class MultiPipeline():
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  # Dynamically import the model and dataset classes
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  # model_type = get_import(config.get("model_type"))
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  dataset_type = get_import(config.get("dataset_type"))
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+ dataset_splitter_type = get_import(config.get("dataset_splitter_type"))
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  combination_type = None
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  kwargs_combination_params=None
@@ -89,6 +90,7 @@ class MultiPipeline():
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  artifact_location=artifact_location,
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  tracking_uri=tracking_uri,
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  dataset_type=dataset_type,
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+ dataset_splitter_type=dataset_splitter_type,
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  columns=columns,
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  column_embedding_configs=column_embedding_configs,
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  vector_db_persist_directory=vector_db_persist_directory,
{ddi_fw-0.0.154.dist-info → ddi_fw-0.0.155.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: ddi_fw
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- Version: 0.0.154
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+ Version: 0.0.155
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
{ddi_fw-0.0.154.dist-info → ddi_fw-0.0.155.dist-info}/RECORD RENAMED
@@ -6,7 +6,7 @@ ddi_fw/datasets/embedding_generator.py,sha256=jiDKwLaPMaQkloxQkuCrhl-A-2OdvocmkS
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  ddi_fw/datasets/feature_vector_generation.py,sha256=gvjpEzkgVV8dp4V8NMMv59u0v-1tNAJ7v83R-keWGoA,4748
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  ddi_fw/datasets/idf_helper.py,sha256=_Gd1dtDSLaw8o-o0JugzSKMt9FpeXewTh4wGEaUd4VQ,2571
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  ddi_fw/datasets/setup_._py,sha256=khYVJuW5PlOY_i_A16F3UbSZ6s6o_ljw33Byw3C-A8E,1047
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- ddi_fw/datasets/ddi_mdl/base.py,sha256=sj4WfwNmcTFznVxlND6FYoyqnL7VUrjn0TG24LDYk3w,9353
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+ ddi_fw/datasets/ddi_mdl/base.py,sha256=hk2DC4Xj-7vYu6m1qTYuBS0s3KP7jBrhAjQJofHP0WU,9537
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  ddi_fw/datasets/ddi_mdl/debug.log,sha256=eWz05j8RFqZuHFDTCF7Rck5w4rvtTanFN21iZsgxO7Y,115
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  ddi_fw/datasets/ddi_mdl/readme.md,sha256=WC6lpmsEKvIISnZqENY7TWtzCQr98HPpE3oRsBl8pIw,625
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  ddi_fw/datasets/ddi_mdl/data/event.db,sha256=cmlSsf9MYjRzqR-mw3cUDnTnfT6FkpOG2yCl2mMwwew,30580736
@@ -86,7 +86,7 @@ ddi_fw/ner/mmlrestclient.py,sha256=NZta7m2Qm6I_qtVguMZhqtAUjVBmmXn0-TMnsNp0jpg,6
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  ddi_fw/ner/ner.py,sha256=FHyyX53Xwpdw8Hec261dyN88yD7Z9LmJua2mIrQLguI,17967
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  ddi_fw/pipeline/__init__.py,sha256=tKDM_rW4vPjlYTeOkNgi9PujDzb4e9O3LK1w5wqnebw,212
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  ddi_fw/pipeline/multi_modal_combination_strategy.py,sha256=JSyuP71b1I1yuk0s2ecCJZTtCED85jBtkpwTUxibJvI,1706
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- ddi_fw/pipeline/multi_pipeline.py,sha256=D_BZ3ciHbVGuuB7m7cEmVQHESruh1gqhA-vxCMfNKj0,5407
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+ ddi_fw/pipeline/multi_pipeline.py,sha256=NfcH4Ze5U-JRiH3lrxEDWj-VPxYQYtp7tq6bLCImBzs,5550
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  ddi_fw/pipeline/ner_pipeline.py,sha256=q1aKjb54Ra1HzZ7dARvBw6lB37je9R-POEf2h6QT_nU,6018
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  ddi_fw/pipeline/pipeline.py,sha256=70lYsluAnTWDLTlf6rbecffw3Bl34L1_6ALfLUoSvtY,11324
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  ddi_fw/utils/__init__.py,sha256=77563ikqAtdzjjgRlLp5OAsJBbpLA1Cao8iecGaVUXQ,354
@@ -97,7 +97,7 @@ ddi_fw/utils/package_helper.py,sha256=erl8_onmhK-41zQoaED2qyDUV9GQxmT9sdoyRp9_q5
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  ddi_fw/utils/py7zr_helper.py,sha256=gOqaFIyJvTjUM-btO2x9AQ69jZOS8PoKN0wetYIckJw,4747
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  ddi_fw/utils/utils.py,sha256=szwnxMTDRrZoeNRyDuf3aCbtzriwtaRk4mHSH3asLdA,4301
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  ddi_fw/utils/zip_helper.py,sha256=YRZA4tKZVBJwGQM0_WK6L-y5MoqkKoC-nXuuHK6CU9I,5567
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- ddi_fw-0.0.154.dist-info/METADATA,sha256=u9w1h_7YiMy64J3Ul7uEkz_YQAePYycw9AL12gU7FNI,2082
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- ddi_fw-0.0.154.dist-info/WHEEL,sha256=DK49LOLCYiurdXXOXwGJm6U4DkHkg4lcxjhqwRa0CP4,91
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- ddi_fw-0.0.154.dist-info/top_level.txt,sha256=PMwHICFZTZtcpzQNPV4UQnfNXYIeLR_Ste-Wfc1h810,7
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- ddi_fw-0.0.154.dist-info/RECORD,,
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+ ddi_fw-0.0.155.dist-info/METADATA,sha256=Eko-GWtTpFIvR_X4flADahxqTxPXYQ5Ei2TS8XuTEto,2082
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+ ddi_fw-0.0.155.dist-info/WHEEL,sha256=DK49LOLCYiurdXXOXwGJm6U4DkHkg4lcxjhqwRa0CP4,91
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+ ddi_fw-0.0.155.dist-info/top_level.txt,sha256=PMwHICFZTZtcpzQNPV4UQnfNXYIeLR_Ste-Wfc1h810,7
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+ ddi_fw-0.0.155.dist-info/RECORD,,