ddi-fw 0.0.12__py3-none-any.whl → 0.0.14__py3-none-any.whl

ddi_fw/drugbank/drugbank_parser.py

@@ -11,7 +11,7 @@ import json as json
 import sys
 import unicodedata
 import re
-
+from importlib import resources as impresources
 from ddi_fw.utils import ZipHelper
 
 
@@ -66,12 +66,14 @@ def modify_keys(d):
 
 
 class DrugBankParser:
-    def __init__(self, xsd_file='drugbank.xsd', zip_file='drugbank.zip', input_path='./drugbank'):
+    def __init__(self, zip_file='drugbank.zip', input_path='./drugbank'):
 
         # sys.path.insert(0,'/content/drive/My Drive/drugbank')
         # HERE = '/content/drive/My Drive/drugbank'
         HERE = input_path
-        DRUGBANK_XSD = HERE + '/' + xsd_file
+        xsd_file='drugbank.xsd'
+        DRUGBANK_XSD = open(impresources.files(xsd_file)) 
+        # DRUGBANK_XSD = HERE + '/' + xsd_file
         DRUGBANK_ZIP = HERE + '/' + zip_file
         xsd = xmlschema.XMLSchema(DRUGBANK_XSD)
         self.drug_type_schema = xsd.complex_types[1]
@@ -152,3 +154,7 @@ class DrugBankParser:
         zip_helper = ZipHelper()
         zip_helper.zip(zip_prefix='drugs', input_path=input_path,
                        output_path=output_path, chunk_size=chunk_size)
+
+
+if __name__ == "__main__":
+    DrugBankParser()

{ddi_fw-0.0.12.dist-info → ddi_fw-0.0.14.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: ddi_fw
-Version: 0.0.12
+Version: 0.0.14
 Summary: Do not use :)
 Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
 Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
@@ -22,10 +22,11 @@ Classifier: Topic :: Scientific/Engineering :: Information Analysis
 Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
 Requires-Python: >=3.8
 Description-Content-Type: text/markdown
-Requires-Dist: lxml==4.9.3
+Requires-Dist: importlib-resources
+Requires-Dist: lxml
 Requires-Dist: matplotlib
 Requires-Dist: mlflow==2.7.1
-Requires-Dist: nltk==3.8.1
+Requires-Dist: nltk
 Requires-Dist: numpy
 Requires-Dist: pandas
 Requires-Dist: plotly

{ddi_fw-0.0.12.dist-info → ddi_fw-0.0.14.dist-info}/RECORD

@@ -52,7 +52,7 @@ ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt,sha256=OvOoA46fFKLlP6Ub
 ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt,sha256=STKdpjRqA0Vi63RJ5NBbCOhl6TODyGNdFkGdn5EFuO4,340217
 ddi_fw/drugbank/__init__.py,sha256=4_eKdZsnXUSJyr-TZpHwIn13JC6PqS5imeLJJbgt2-A,94
 ddi_fw/drugbank/drugbank.xsd,sha256=y-WzMHANyzmf5T_0ywlMOq63ft9uW41B5I1WfBKbh9c,43306
-ddi_fw/drugbank/drugbank_parser.py,sha256=Zc-WXCqE6cjaPpXmDSFYZWZgckTrhEHl5PW9ZNxtbcs,5457
+ddi_fw/drugbank/drugbank_parser.py,sha256=42fq3OJYmLRxg0OEiqAECdy_4rjv1IY00UXnXkDUX2o,5626
 ddi_fw/drugbank/drugbank_processor.py,sha256=4Hs6cPmG_d0wDXA6979WMZQmFcDrGbCGLja-Nhs7gyQ,17692
 ddi_fw/drugbank/drugbank_processor_org.py,sha256=eO5Yset50P91qkic79RUXPoEuxRxQKFkKW0l4G29Mas,13322
 ddi_fw/drugbank/event_extractor.py,sha256=6odoZohhK7OdLF-LF0l-5BFq0_NMG_5jrFJbHrBXsI8,4600
@@ -79,7 +79,7 @@ ddi_fw/utils/__init__.py,sha256=nhNU_sEp55xsZ5VtvhozjKg6r4GWP6SJI13v8F_jbCg,217
 ddi_fw/utils/enums.py,sha256=19eJ3fX5eRK_xPvkYcukmug144jXPH4X9zQqtsFBj5A,671
 ddi_fw/utils/utils.py,sha256=Na6Y8mY-CFbQjrgd9xC8agcrjVvTj_7KIXqFm1H_3qU,3549
 ddi_fw/utils/zip_helper.py,sha256=DjtwcGBoYw8zOP-Ye5OxzeR1OgN3WfNkVx85nb0wbJA,2635
-ddi_fw-0.0.12.dist-info/METADATA,sha256=jTfra4iaQJUHludQAGGbDtD7w6FJ6BQ3ZpkDn4oVC6s,1486
-ddi_fw-0.0.12.dist-info/WHEEL,sha256=cVxcB9AmuTcXqmwrtPhNK88dr7IR_b6qagTj0UvIEbY,91
-ddi_fw-0.0.12.dist-info/top_level.txt,sha256=PMwHICFZTZtcpzQNPV4UQnfNXYIeLR_Ste-Wfc1h810,7
-ddi_fw-0.0.12.dist-info/RECORD,,
+ddi_fw-0.0.14.dist-info/METADATA,sha256=95Z-tMGYBXCSV4zTONKfRoPpyyKyKVP_Jl5zpEEAve4,1508
+ddi_fw-0.0.14.dist-info/WHEEL,sha256=cVxcB9AmuTcXqmwrtPhNK88dr7IR_b6qagTj0UvIEbY,91
+ddi_fw-0.0.14.dist-info/top_level.txt,sha256=PMwHICFZTZtcpzQNPV4UQnfNXYIeLR_Ste-Wfc1h810,7
+ddi_fw-0.0.14.dist-info/RECORD,,