ddi-fw 0.0.117__py3-none-any.whl → 0.0.119__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- ddi_fw/datasets/ddi_mdl/base.py +14 -4
- {ddi_fw-0.0.117.dist-info → ddi_fw-0.0.119.dist-info}/METADATA +1 -1
- {ddi_fw-0.0.117.dist-info → ddi_fw-0.0.119.dist-info}/RECORD +5 -5
- {ddi_fw-0.0.117.dist-info → ddi_fw-0.0.119.dist-info}/WHEEL +0 -0
- {ddi_fw-0.0.117.dist-info → ddi_fw-0.0.119.dist-info}/top_level.txt +0 -0
ddi_fw/datasets/ddi_mdl/base.py
CHANGED
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@@ -60,7 +60,7 @@ class DDIMDLDataset(BaseDataset):
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embedding_columns.append(column)
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elif column in list_of_ner_columns:
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ner_columns.append(column)
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elif column == 'smile_2':
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+
elif column == 'smile_2' or column=='smile_3':
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continue
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else:
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raise Exception(f"{column} is not related this dataset")
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@@ -90,18 +90,22 @@ class DDIMDLDataset(BaseDataset):
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sim_matrix_gen = SimilarityMatrixGenerator()
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jaccard_sim_dict["smile_2"] = sim_matrix_gen.create_jaccard_similarity_matrices(
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self.drugs_df["smile_2"].to_list())
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jaccard_sim_dict["smile_3"] = sim_matrix_gen.create_jaccard_similarity_matrices(
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self.drugs_df["smile_3"].to_list())
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similarity_matrices = {}
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drugbank_ids = self.drugs_df['id'].to_list()
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new_columns = {}
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for idx in range(len(drugbank_ids)):
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new_columns[idx] = drugbank_ids[idx]
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for idx in range(len(drugbank_ids)):
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new_columns[idx] = drugbank_ids[idx]
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new_df = pd.DataFrame.from_dict(jaccard_sim_dict["smile_2"])
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new_df = new_df.rename(index=new_columns, columns=new_columns)
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similarity_matrices["smile_2"] = new_df
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new_df_2 = pd.DataFrame.from_dict(jaccard_sim_dict["smile_3"])
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new_df_2 = new_df.rename(index=new_columns, columns=new_columns)
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similarity_matrices["smile_3"] = new_df_2
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def lambda_fnc(row, value):
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if row['id1'] in value and row['id2'] in value:
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return np.float16(np.hstack(
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@@ -705,7 +709,13 @@ class DDIMDLDataset(BaseDataset):
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dict_df = pd.DataFrame(list(d.items()), columns=['id', 'smile_3'])
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df = pd.merge(df, dict_df, on='id', how='left')
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-
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df['smile_3'] = df['smile_3'].apply(lambda x:
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np.fromstring(
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x.replace(
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'\n', '')
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.replace('[', '')
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.replace(']', '')
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.replace(' ', ' '), sep=','))
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return df
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@@ -5,7 +5,7 @@ ddi_fw/datasets/embedding_generator.py,sha256=Jqrlv88RCu0Lg812KsA12X0cSaZuxbckJ4
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ddi_fw/datasets/feature_vector_generation.py,sha256=gvjpEzkgVV8dp4V8NMMv59u0v-1tNAJ7v83R-keWGoA,4748
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ddi_fw/datasets/idf_helper.py,sha256=_Gd1dtDSLaw8o-o0JugzSKMt9FpeXewTh4wGEaUd4VQ,2571
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ddi_fw/datasets/setup_._py,sha256=khYVJuW5PlOY_i_A16F3UbSZ6s6o_ljw33Byw3C-A8E,1047
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ddi_fw/datasets/ddi_mdl/base.py,sha256=
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ddi_fw/datasets/ddi_mdl/base.py,sha256=GGsQFPLzgkMuk2LUDlrN5PJa1ixUZUg_tdKUy1qfh1g,1031565
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ddi_fw/datasets/ddi_mdl/readme.md,sha256=WC6lpmsEKvIISnZqENY7TWtzCQr98HPpE3oRsBl8pIw,625
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ddi_fw/datasets/ddi_mdl/data/event.db,sha256=cmlSsf9MYjRzqR-mw3cUDnTnfT6FkpOG2yCl2mMwwew,30580736
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ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt,sha256=XVlDqYATckrQwNSXqMSKVBqyoN_Hg8SK6CL-XMdLADY,102176
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@@ -91,7 +91,7 @@ ddi_fw/utils/package_helper.py,sha256=erl8_onmhK-41zQoaED2qyDUV9GQxmT9sdoyRp9_q5
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ddi_fw/utils/py7zr_helper.py,sha256=gOqaFIyJvTjUM-btO2x9AQ69jZOS8PoKN0wetYIckJw,4747
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ddi_fw/utils/utils.py,sha256=szwnxMTDRrZoeNRyDuf3aCbtzriwtaRk4mHSH3asLdA,4301
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ddi_fw/utils/zip_helper.py,sha256=YRZA4tKZVBJwGQM0_WK6L-y5MoqkKoC-nXuuHK6CU9I,5567
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ddi_fw-0.0.
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ddi_fw-0.0.
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ddi_fw-0.0.
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ddi_fw-0.0.
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ddi_fw-0.0.119.dist-info/METADATA,sha256=zjwCHU8mJRq9DV1h9v38S8KewAVguTUyzyttrTxkbd0,1967
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ddi_fw-0.0.119.dist-info/WHEEL,sha256=R06PA3UVYHThwHvxuRWMqaGcr-PuniXahwjmQRFMEkY,91
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ddi_fw-0.0.119.dist-info/top_level.txt,sha256=PMwHICFZTZtcpzQNPV4UQnfNXYIeLR_Ste-Wfc1h810,7
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ddi_fw-0.0.119.dist-info/RECORD,,
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File without changes
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File without changes
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