dcnum 0.20.1__py3-none-any.whl → 0.20.3__py3-none-any.whl

dcnum/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.20.1'
-__version_tuple__ = version_tuple = (0, 20, 1)
+__version__ = version = '0.20.3'
+__version_tuple__ = version_tuple = (0, 20, 3)

dcnum/feat/event_extractor_manager_thread.py

@@ -95,12 +95,14 @@ class EventExtractorManagerThread(threading.Thread):
         while True:
             # If the writer_dq starts filling up, then this could lead to
             # an oom-kill signal. Stall for the writer to prevent this.
-            ldq = len(self.writer_dq)
-            if ldq > 1000:
-                stallsec = ldq / 1000
+            if (ldq := len(self.writer_dq)) > 1000:
+                time.sleep(1)
+                ldq2 = len(self.writer_dq)
+                stall_time = (ldq2 - 200) / (ldq - ldq2) if ldq2 > 200 else 0
+                time.sleep(stall_time)
                 self.logger.warning(
-                    f"Stalling {stallsec:.1f}s for slow writer")
-                time.sleep(stallsec)
+                    f"Stalled {stall_time + 1:.1f}s for slow writer "
+                    f"({ldq} chunks queued)")
 
             cur_slot = 0
             unavailable_slots = 0

dcnum/logic/ctrl.py

@@ -666,7 +666,6 @@ class DCNumJobRunner(threading.Thread):
         num_extractors = max(1, num_extractors)
         num_segmenters = max(1, num_segmenters)
         self.job.kwargs["segmenter_kwargs"]["num_workers"] = num_segmenters
-
         slot_chunks = mp_spawn.Array("i", num_slots)
         slot_states = mp_spawn.Array("u", num_slots)
 

dcnum/segm/segm_thresh.py

@@ -10,18 +10,6 @@ class SegmentThresh(CPUSegmenter):
     }
     requires_background_correction = True
 
-    def __init__(self, thresh=-6, *args, **kwargs):
-        """Simple image thresholding segmentation
-
-        Parameters
-        ----------
-        thresh: int
-            grayscale threshold value for creating the mask image;
-            For a background-corrected image, pixels with values below
-            this value are considered to be part of the mask.
-        """
-        super(SegmentThresh, self).__init__(thresh=thresh, *args, **kwargs)
-
     @staticmethod
     def segment_approach(image, *,
                          thresh: float = -6):

{dcnum-0.20.1.dist-info → dcnum-0.20.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dcnum
-Version: 0.20.1
+Version: 0.20.3
 Summary: numerics toolbox for imaging deformability cytometry
 Author: Maximilian Schlögel, Paul Müller
 Maintainer-email: Paul Müller <dev@craban.de>

{dcnum-0.20.1.dist-info → dcnum-0.20.3.dist-info}/RECORD

@@ -1,7 +1,7 @@
 dcnum/__init__.py,sha256=hcawIKS7utYiOyVhOAX9t7K3xYzP1b9862VV0b6qSrQ,74
-dcnum/_version.py,sha256=cyxBp0FYMpyeeOYYUcvD5Pt3djNYQojwuNgSo8-1Bp4,413
+dcnum/_version.py,sha256=7ZBpIaoHyK5xe5B8niAFr7a4ME2vlFXrNQqhWCHU61Y,413
 dcnum/feat/__init__.py,sha256=jUJYWTD3VIoDNKrmryXbjHb1rGwYtK4b7VPWihYgUoo,325
-dcnum/feat/event_extractor_manager_thread.py,sha256=mAjPnS7K-ZmKbWolTNCnjXe3e-y5canNhf1l_GRYil0,7131
+dcnum/feat/event_extractor_manager_thread.py,sha256=fCU28Pavf71zMRV5-N_9Kn1q213RslnMS1UZRmKw9Uo,7284
 dcnum/feat/gate.py,sha256=svbObmqpYdqPawpfrsEjTiUPJXf24GrNi8PXTKT-z44,7225
 dcnum/feat/queue_event_extractor.py,sha256=XhA930QVQ1Z4saisbcGTrEut-fSgwTyfDn6b9GzD4iY,15644
 dcnum/feat/feat_background/__init__.py,sha256=OTmMuazHNaSrZb2XW4cnJ6PlgJLbKrPbaidpEixYa0A,341
@@ -20,7 +20,7 @@ dcnum/feat/feat_texture/__init__.py,sha256=6StM9S540UVtdFFR3bHa7nfCTomeVdoo7Uy9C
 dcnum/feat/feat_texture/common.py,sha256=COXHpXS-7DMouGu3WF83I76L02Sr7P9re4lxajh6g0E,439
 dcnum/feat/feat_texture/tex_all.py,sha256=eGjjNfPpfZw7FA_VNFCIMiU38KD0qcGbxLciYy-tCiA,4097
 dcnum/logic/__init__.py,sha256=7J3GrwJInNQbrLk61HRIV7X7p69TAIbMYpR34hh6u14,177
-dcnum/logic/ctrl.py,sha256=eaA_eO8X9c8wXFo35GwcMZEKQwzsVual7JTNL9f12y4,34412
+dcnum/logic/ctrl.py,sha256=QU-Mwb_YKu-4oIk6XZ4oyXvzIeSc4CZodFVyIGqJnWs,34411
 dcnum/logic/job.py,sha256=cF4bPiEy5UkDmQN91Ku2yxBW0nXBEmKTNkIHlL2LT-U,6724
 dcnum/logic/json_encoder.py,sha256=cxMnqisbKEVf-rVcw6rK2BBAb6iz_hKFaGl81kK36lQ,571
 dcnum/meta/__init__.py,sha256=AVqRgyKXO1orKnE305h88IBvoZ1oz6X11HN1WP5nGvg,60
@@ -32,7 +32,7 @@ dcnum/read/const.py,sha256=GG9iyXDtEldvJYOBnhZjlimzIeBMAt4bSr2-xn2gzzc,464
 dcnum/read/hdf5_data.py,sha256=Yyq02UTILc5ZgIQXpR9Y0wuX2WT8s0g23PraI7KxmJY,23489
 dcnum/read/mapped.py,sha256=UryArlrIsHxjOyimBL2Nooi3r73zuGtnGdqdxa6PK_g,3076
 dcnum/segm/__init__.py,sha256=iiq_1A9DU5wMUcKnsZ53E7NyzCkbZCJeUDimzunE-OM,247
-dcnum/segm/segm_thresh.py,sha256=lMf-lso_O_5Q5lJiiIQdYkM3zlj4uwNz9cNvLxVMeXc,1396
+dcnum/segm/segm_thresh.py,sha256=W9f9--aYmXpFjv3IASB6I90V40PJcIe_Jt_1iK-eHhw,946
 dcnum/segm/segmenter.py,sha256=gVzmP6CuwI9Qfk8GN_xWGu_xbtVTOhxIOWn-2yr_H1Y,12220
 dcnum/segm/segmenter_cpu.py,sha256=IzhPNQaO4TBh3EzZqLGaBAeRryfBKnld7Joe8qY4AB4,10690
 dcnum/segm/segmenter_gpu.py,sha256=Au1MQdAalVsmJ-cmb3OcCmEMBfXSDuJjdXJTGqEIcG8,1962
@@ -41,8 +41,8 @@ dcnum/write/__init__.py,sha256=QvWHeZmjHI18i-YlGYuzN3i7dVWY9UCReKchrJ-gif0,260
 dcnum/write/deque_writer_thread.py,sha256=ao7F1yrVKyufgC4rC0Y2_Vt7snuT6KpI7W2qVxcjdhk,1994
 dcnum/write/queue_collector_thread.py,sha256=d_WfdsZdFnFsiAY0zVMwUlA4juIMeiWYmE_-rezBQCE,11734
 dcnum/write/writer.py,sha256=e6J8YVqhS7kzkpPIMoDMokJpqSy1WWNdOrwaJof1oVc,15601
-dcnum-0.20.1.dist-info/LICENSE,sha256=YRChA1C8A2E-amJbudwMcbTCZy_HzmeY0hMIvduh1MM,1089
-dcnum-0.20.1.dist-info/METADATA,sha256=8hfnqtJ-lrkKlXnbWBGqRK4bSDDb0C4zmQDB6Os8f-U,2194
-dcnum-0.20.1.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-dcnum-0.20.1.dist-info/top_level.txt,sha256=Hmh38rgG_MFTVDpUDGuO2HWTSq80P585Het4COQzFTg,6
-dcnum-0.20.1.dist-info/RECORD,,
+dcnum-0.20.3.dist-info/LICENSE,sha256=YRChA1C8A2E-amJbudwMcbTCZy_HzmeY0hMIvduh1MM,1089
+dcnum-0.20.3.dist-info/METADATA,sha256=vSymdBOf42F_8WQKPFJ1Bbc6EUeQkWqlCg-g3ikiXOY,2194
+dcnum-0.20.3.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+dcnum-0.20.3.dist-info/top_level.txt,sha256=Hmh38rgG_MFTVDpUDGuO2HWTSq80P585Het4COQzFTg,6
+dcnum-0.20.3.dist-info/RECORD,,