dcnum 0.16.7__py3-none-any.whl → 0.16.8__py3-none-any.whl

dcnum/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.16.7'
-__version_tuple__ = version_tuple = (0, 16, 7)
+__version__ = version = '0.16.8'
+__version_tuple__ = version_tuple = (0, 16, 8)

dcnum/feat/event_extractor_manager_thread.py

@@ -99,7 +99,7 @@ class EventExtractorManagerThread(threading.Thread):
             if ldq > 100:
                 stallsec = ldq / 100
                 self.logger.warning(
-                    f"Stalling {stallsec:.1f}s for slow writer.")
+                    f"Stalling {stallsec:.1f}s for slow writer")
                 time.sleep(stallsec)
 
             cur_slot = 0

dcnum/logic/ctrl.py

@@ -124,21 +124,23 @@ class DCNumJobRunner(threading.Thread):
         self.logger = logging.getLogger(f"dcnum.Runner-{self.pphash[:2]}")
 
         # Sanity checks
-        for os_env in [
-            "OMP_NUM_THREADS",
-            "MKL_NUM_THREADS",
-            "NUMEXPR_NUM_THREADS",
-                "NUMBA_NUM_THREADS"]:
+        for os_env in ["MKL_NUM_THREADS", "NUMBA_NUM_THREADS",
+                       "NUMEXPR_NUM_THREADS", "NUMPY_NUM_THREADS",
+                       "OPENBLAS_NUM_THREADS", "OMP_NUM_THREADS",
+                       "VECLIB_MAXIMUM_THREADS"]:
             # You should disable multithreading for all major tools that
             # use dcnum.logic. We don't want multithreading, because dcnum
             # uses linear code and relies on multiprocessing for
             # parallelization. This has to be done before importing numpy
             # or any other library affected. In your scripts, you can use:
             #
-            #    os.environ.setdefault("OMP_NUM_THREADS", "1")
             #    os.environ.setdefault("MKL_NUM_THREADS", "1")
-            #    os.environ.setdefault("NUMEXPR_NUM_THREADS", "1")
             #    os.environ.setdefault("NUMBA_NUM_THREADS", "1")
+            #    os.environ.setdefault("NUMEXPR_NUM_THREADS", "1")
+            #    os.environ.setdefault("NUMPY_NUM_THREADS", "1")
+            #    os.environ.setdefault("OPENBLAS_NUM_THREADS", "1")
+            #    os.environ.setdefault("OMP_NUM_THREADS", "1")
+            #    os.environ.setdefault("VECLIB_MAXIMUM_THREADS", "1")
             #
             val_act = os.environ.get(os_env)
             if val_act != "1":
@@ -515,7 +517,7 @@ class DCNumJobRunner(threading.Thread):
             num_segmenters = 1
         num_extractors = max(1, num_extractors)
         num_segmenters = max(1, num_segmenters)
-        self.job["segmenter_kwargs"]["num_workers"] = num_segmenters
+        self.job.kwargs["segmenter_kwargs"]["num_workers"] = num_segmenters
 
         slot_chunks = mp_spawn.Array("i", num_slots)
         slot_states = mp_spawn.Array("u", num_slots)

{dcnum-0.16.7.dist-info → dcnum-0.16.8.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dcnum
-Version: 0.16.7
+Version: 0.16.8
 Summary: numerics toolbox for imaging deformability cytometry
 Author: Maximilian Schlögel, Paul Müller
 Maintainer-email: Paul Müller <dev@craban.de>

{dcnum-0.16.7.dist-info → dcnum-0.16.8.dist-info}/RECORD

@@ -1,7 +1,7 @@
 dcnum/__init__.py,sha256=hcawIKS7utYiOyVhOAX9t7K3xYzP1b9862VV0b6qSrQ,74
-dcnum/_version.py,sha256=qnrnqIwaxxSmbCyOa5NQksqjVQLJBzYOk8VUPMYeuoY,413
+dcnum/_version.py,sha256=9RDap9Epg0PWfAHpF1CbM0Nbp6dRrQKcwV8RmgVyzJs,413
 dcnum/feat/__init__.py,sha256=JqlgzOgDJhoTk8WVYcIiKTWq9EAM16_jGivzOtN6JGo,325
-dcnum/feat/event_extractor_manager_thread.py,sha256=NSoey-h-STIAvadHWDbkhXsB6FZ_SkYnBbEC6JWkTQ0,7130
+dcnum/feat/event_extractor_manager_thread.py,sha256=Ocid_t1awH6pOmurCmKYkC51XsXB0-DoN3fzjFDgE4c,7129
 dcnum/feat/gate.py,sha256=ZTV2tkNqJBGmwemZrI0IAaPXTLgWO_5ZVxnpqr2G1cI,7464
 dcnum/feat/queue_event_extractor.py,sha256=eacmcM_uHHW6GtqCCtDCZib9423TGvuqgxGKAxv0tgc,15686
 dcnum/feat/feat_background/__init__.py,sha256=OTmMuazHNaSrZb2XW4cnJ6PlgJLbKrPbaidpEixYa0A,341
@@ -19,7 +19,7 @@ dcnum/feat/feat_texture/__init__.py,sha256=6StM9S540UVtdFFR3bHa7nfCTomeVdoo7Uy9C
 dcnum/feat/feat_texture/common.py,sha256=COXHpXS-7DMouGu3WF83I76L02Sr7P9re4lxajh6g0E,439
 dcnum/feat/feat_texture/tex_all.py,sha256=eGjjNfPpfZw7FA_VNFCIMiU38KD0qcGbxLciYy-tCiA,4097
 dcnum/logic/__init__.py,sha256=7J3GrwJInNQbrLk61HRIV7X7p69TAIbMYpR34hh6u14,177
-dcnum/logic/ctrl.py,sha256=Gd17hdEYTxvdXZkTqqul4WUCu5wf4Gf0f8LZJ9EX83k,26725
+dcnum/logic/ctrl.py,sha256=7m1HL_kO62d8Kt_o4gX3bhxbI4pwOhv3HWHRmbCaMp0,27022
 dcnum/logic/job.py,sha256=M0Q-Rfcm-zkTXTQc79W6YSNUjUlgmRPG0Ikbdn1aOpY,4608
 dcnum/logic/json_encoder.py,sha256=dy44ArmdnxpUfxxONmKdIv-fde3aTXPjZDN0HPATaxs,467
 dcnum/meta/__init__.py,sha256=cQT_HN5yDKzMnZM8CUyNmeA68OhE3ENO_rvFmgDj95c,40
@@ -38,8 +38,8 @@ dcnum/write/__init__.py,sha256=Cpn3LqL18hh8OScUnGp_AnNfpWPpKW-oAJZH6ot7aRA,241
 dcnum/write/deque_writer_thread.py,sha256=KpJ6po8JPlM696MITN-bhNnWQcy9E-qlhg9g-uzoPZg,1710
 dcnum/write/queue_collector_thread.py,sha256=YQ6pvKNmCDf1C6HVx6gOA-q-FBoI6nkhOo-tAVYnyag,11906
 dcnum/write/writer.py,sha256=QGYNda102f2_12YWXu5WEBEQaTXhNnuQ20g-Dej-cek,10535
-dcnum-0.16.7.dist-info/LICENSE,sha256=YRChA1C8A2E-amJbudwMcbTCZy_HzmeY0hMIvduh1MM,1089
-dcnum-0.16.7.dist-info/METADATA,sha256=-FkRf9AUrKMuhTWwUp4SQnkYOKZ4KK4s6inH0Q2rZ4Q,2194
-dcnum-0.16.7.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
-dcnum-0.16.7.dist-info/top_level.txt,sha256=Hmh38rgG_MFTVDpUDGuO2HWTSq80P585Het4COQzFTg,6
-dcnum-0.16.7.dist-info/RECORD,,
+dcnum-0.16.8.dist-info/LICENSE,sha256=YRChA1C8A2E-amJbudwMcbTCZy_HzmeY0hMIvduh1MM,1089
+dcnum-0.16.8.dist-info/METADATA,sha256=OwayeBlT5wdvffELr7znBmnKvlS52I7sdeP8bOB10lo,2194
+dcnum-0.16.8.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
+dcnum-0.16.8.dist-info/top_level.txt,sha256=Hmh38rgG_MFTVDpUDGuO2HWTSq80P585Het4COQzFTg,6
+dcnum-0.16.8.dist-info/RECORD,,