dcicutils 8.8.1.1b11__py3-none-any.whl → 8.8.1.1b14__py3-none-any.whl

dcicutils/progress_constants.py

@@ -1,3 +1,4 @@
+from datetime import datetime
 from enum import Enum
 
 
@@ -16,6 +17,7 @@ class PROGRESS_INGESTER(Enum):
     MESSAGE = "ingester_message"
     MESSAGE_VERBOSE = "ingester_message_verbose"
     MESSAGE_DEBUG = "ingester_message_debug"
+    NOW = lambda: str(datetime.utcnow())  # noqa
 
 
 class PROGRESS_PARSE(Enum):
@@ -41,6 +43,7 @@ class PROGRESS_PARSE(Enum):
     MESSAGE = "parse_message"
     MESSAGE_VERBOSE = "parse_message_verbose"
     MESSAGE_DEBUG = "parse_message_debug"
+    NOW = lambda: str(datetime.utcnow())  # noqa
 
 
 class PROGRESS_LOADXL(Enum):
@@ -57,3 +60,4 @@ class PROGRESS_LOADXL(Enum):
     MESSAGE = "loadxl_message"
     MESSAGE_VERBOSE = "loadxl_message_verbose"
     MESSAGE_DEBUG = "loadxl_message_debug"
+    NOW = lambda: str(datetime.utcnow())  # noqa

dcicutils/structured_data.py

@@ -192,8 +192,8 @@ class StructuredDataSet:
         diffs = {}
         if callable(progress):
             ntypes, nobjects = get_counts()
-            progress({PROGRESS.ANALYZE_START: True,
-                      PROGRESS.ANALYZE_COUNT_TYPES: ntypes, PROGRESS.ANALYZE_COUNT_ITEMS: nobjects})
+            progress({PROGRESS.ANALYZE_START.value: True,
+                      PROGRESS.ANALYZE_COUNT_TYPES.value: ntypes, PROGRESS.ANALYZE_COUNT_ITEMS.value: nobjects})
         if self.data or self.portal:  # TODO: what is this OR biz?
             refs = self.resolved_refs_with_uuids
             # TODO: Need feedback/progress tracking mechanism here.
@@ -212,19 +212,20 @@ class StructuredDataSet:
                                                                        uuid=existing_object.uuid,
                                                                        diffs=object_diffs or None))
                         if callable(progress):
-                            progress({PROGRESS.ANALYZE_UPDATE: True,
-                                      PROGRESS.ANALYZE_COUNT_LOOKUP: nlookups + nlookups_compare})
+                            progress({PROGRESS.ANALYZE_UPDATE.value: True,
+                                      PROGRESS.ANALYZE_COUNT_LOOKUP.value: nlookups + nlookups_compare})
                     elif identifying_path:
                         # If there is no existing object we still create a record for this object
                         # but with no uuid which will be the indication that it does not exist.
                         diffs[type_name].append(create_readonly_object(path=identifying_path, uuid=None, diffs=None))
                         if callable(progress):
-                            progress({PROGRESS.ANALYZE_CREATE: True, PROGRESS.ANALYZE_COUNT_LOOKUP: nlookups})
+                            progress({PROGRESS.ANALYZE_CREATE.value: True,
+                                      PROGRESS.ANALYZE_COUNT_LOOKUP.value: nlookups})
                     else:
                         if callable(progress):
-                            progress({PROGRESS.ANALYZE_COUNT_LOOKUP: nlookups})
+                            progress({PROGRESS.ANALYZE_COUNT_LOOKUP.value: nlookups})
         if callable(progress):
-            progress({PROGRESS.ANALYZE_DONE: True})
+            progress({PROGRESS.ANALYZE_DONE.value: True})
         return diffs
 
     def load_file(self, file: str) -> None:
@@ -271,8 +272,8 @@ class StructuredDataSet:
             return nrows, len(excel.sheet_names)
         if self._progress:  # TODO: Move to _load_reader
             nrows, nsheets = get_counts()
-            self._progress({PROGRESS.LOAD_START: True,
-                            PROGRESS.LOAD_COUNT_SHEETS: nsheets, PROGRESS.LOAD_COUNT_ROWS: nrows})
+            self._progress({PROGRESS.LOAD_START.value: True,
+                            PROGRESS.LOAD_COUNT_SHEETS.value: nsheets, PROGRESS.LOAD_COUNT_ROWS.value: nrows})
         excel = Excel(file)  # Order the sheet names by any specified ordering (e.g. ala snovault.loadxl).
         order = {Schema.type_name(key): index for index, key in enumerate(self._order)} if self._order else {}
         for sheet_name in sorted(excel.sheet_names, key=lambda key: order.get(Schema.type_name(key), sys.maxsize)):
@@ -297,14 +298,14 @@ class StructuredDataSet:
                 del self._errors["ref"]
         if self._progress:
             self._progress({   # TODO: Refactor with same thing below in _load_reader.
-                PROGRESS.LOAD_DONE: True,
-                PROGRESS.LOAD_COUNT_REFS: self.ref_total_count,
-                PROGRESS.LOAD_COUNT_REFS_FOUND: self.ref_total_found_count,
-                PROGRESS.LOAD_COUNT_REFS_NOT_FOUND: self.ref_total_notfound_count,
-                PROGRESS.LOAD_COUNT_REFS_LOOKUP: self.ref_lookup_count,
-                PROGRESS.LOAD_COUNT_REFS_LOOKUP_CACHE_HIT: self.ref_lookup_cache_hit_count,
-                PROGRESS.LOAD_COUNT_REFS_EXISTS_CACHE_HIT: self.ref_exists_cache_hit_count,
-                PROGRESS.LOAD_COUNT_REFS_INVALID: self.ref_invalid_identifying_property_count
+                PROGRESS.LOAD_DONE.value: PROGRESS.NOW(),
+                PROGRESS.LOAD_COUNT_REFS.value: self.ref_total_count,
+                PROGRESS.LOAD_COUNT_REFS_FOUND.value: self.ref_total_found_count,
+                PROGRESS.LOAD_COUNT_REFS_NOT_FOUND.value: self.ref_total_notfound_count,
+                PROGRESS.LOAD_COUNT_REFS_LOOKUP.value: self.ref_lookup_count,
+                PROGRESS.LOAD_COUNT_REFS_LOOKUP_CACHE_HIT.value: self.ref_lookup_cache_hit_count,
+                PROGRESS.LOAD_COUNT_REFS_EXISTS_CACHE_HIT.value: self.ref_exists_cache_hit_count,
+                PROGRESS.LOAD_COUNT_REFS_INVALID.value: self.ref_invalid_identifying_property_count
             })
 
     def _load_json_file(self, file: str) -> None:
@@ -334,14 +335,14 @@ class StructuredDataSet:
             self._add(type_name, structured_row)
             if self._progress:
                 self._progress({
-                    PROGRESS.LOAD_ITEM: True,
-                    PROGRESS.LOAD_COUNT_REFS: self.ref_total_count,
-                    PROGRESS.LOAD_COUNT_REFS_FOUND: self.ref_total_found_count,
-                    PROGRESS.LOAD_COUNT_REFS_NOT_FOUND: self.ref_total_notfound_count,
-                    PROGRESS.LOAD_COUNT_REFS_LOOKUP: self.ref_lookup_count,
-                    PROGRESS.LOAD_COUNT_REFS_LOOKUP_CACHE_HIT: self.ref_lookup_cache_hit_count,
-                    PROGRESS.LOAD_COUNT_REFS_EXISTS_CACHE_HIT: self.ref_exists_cache_hit_count,
-                    PROGRESS.LOAD_COUNT_REFS_INVALID: self.ref_invalid_identifying_property_count
+                    PROGRESS.LOAD_ITEM.value: True,
+                    PROGRESS.LOAD_COUNT_REFS.value: self.ref_total_count,
+                    PROGRESS.LOAD_COUNT_REFS_FOUND.value: self.ref_total_found_count,
+                    PROGRESS.LOAD_COUNT_REFS_NOT_FOUND.value: self.ref_total_notfound_count,
+                    PROGRESS.LOAD_COUNT_REFS_LOOKUP.value: self.ref_lookup_count,
+                    PROGRESS.LOAD_COUNT_REFS_LOOKUP_CACHE_HIT.value: self.ref_lookup_cache_hit_count,
+                    PROGRESS.LOAD_COUNT_REFS_EXISTS_CACHE_HIT.value: self.ref_exists_cache_hit_count,
+                    PROGRESS.LOAD_COUNT_REFS_INVALID.value: self.ref_invalid_identifying_property_count
                 })
         self._note_warning(reader.warnings, "reader")
         if schema:

{dcicutils-8.8.1.1b11.dist-info → dcicutils-8.8.1.1b14.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dcicutils
-Version: 8.8.1.1b11
+Version: 8.8.1.1b14
 Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
 Home-page: https://github.com/4dn-dcic/utils
 License: MIT

{dcicutils-8.8.1.1b11.dist-info → dcicutils-8.8.1.1b14.dist-info}/RECORD

@@ -48,7 +48,7 @@ dcicutils/obfuscation_utils.py,sha256=fo2jOmDRC6xWpYX49u80bVNisqRRoPskFNX3ymFAmj
 dcicutils/opensearch_utils.py,sha256=V2exmFYW8Xl2_pGFixF4I2Cc549Opwe4PhFi5twC0M8,1017
 dcicutils/portal_object_utils.py,sha256=MF6MTZ6yxakZFDjbkTKCsF4q4p11dLDVvT5JBV9m6RQ,15408
 dcicutils/portal_utils.py,sha256=oBoI3KWRp6YrbsuVGbmPQ3kATB5cVVsQo7-qmnYXWqg,30260
-dcicutils/progress_constants.py,sha256=oD6JKkPWDM22sFDlEus-JlDl9-jUC82MezVV8nJq870,2146
+dcicutils/progress_constants.py,sha256=9fCppbB8vKgXBUlmzuaz7z6ylv4GmONrGw9-iwIhRu8,2323
 dcicutils/project_utils.py,sha256=qPdCaFmWUVBJw4rw342iUytwdQC0P-XKpK4mhyIulMM,31250
 dcicutils/qa_checkers.py,sha256=cdXjeL0jCDFDLT8VR8Px78aS10hwNISOO5G_Zv2TZ6M,20534
 dcicutils/qa_utils.py,sha256=TT0SiJWiuxYvbsIyhK9VO4uV_suxhB6CpuC4qPacCzQ,160208
@@ -63,15 +63,15 @@ dcicutils/secrets_utils.py,sha256=8dppXAsiHhJzI6NmOcvJV5ldvKkQZzh3Fl-cb8Wm7MI,19
 dcicutils/sheet_utils.py,sha256=VlmzteONW5VF_Q4vo0yA5vesz1ViUah1MZ_yA1rwZ0M,33629
 dcicutils/snapshot_utils.py,sha256=ymP7PXH6-yEiXAt75w0ldQFciGNqWBClNxC5gfX2FnY,22961
 dcicutils/ssl_certificate_utils.py,sha256=F0ifz_wnRRN9dfrfsz7aCp4UDLgHEY8LaK7PjnNvrAQ,9707
-dcicutils/structured_data.py,sha256=1guVNDzIVxJkQA_m0jSh9xI2FB5oVXR4m7sqrqF8A5w,58559
+dcicutils/structured_data.py,sha256=2D3GaYNxUW-yKBbP05-4wrMGSSN2nF58ucnwWvLVfVE,58775
 dcicutils/task_utils.py,sha256=MF8ujmTD6-O2AC2gRGPHyGdUrVKgtr8epT5XU8WtNjk,8082
 dcicutils/tmpfile_utils.py,sha256=n95XF8dZVbQRSXBZTGToXXfSs3JUVRyN6c3ZZ0nhAWI,1403
 dcicutils/trace_utils.py,sha256=g8kwV4ebEy5kXW6oOrEAUsurBcCROvwtZqz9fczsGRE,1769
 dcicutils/validation_utils.py,sha256=cMZIU2cY98FYtzK52z5WUYck7urH6JcqOuz9jkXpqzg,14797
 dcicutils/variant_utils.py,sha256=2H9azNx3xAj-MySg-uZ2SFqbWs4kZvf61JnK6b-h4Qw,4343
 dcicutils/zip_utils.py,sha256=rnjNv_k6L9jT2SjDSgVXp4BEJYLtz9XN6Cl2Fy-tqnM,2027
-dcicutils-8.8.1.1b11.dist-info/LICENSE.txt,sha256=qnwSmfnEWMl5l78VPDEzAmEbLVrRqQvfUQiHT0ehrOo,1102
-dcicutils-8.8.1.1b11.dist-info/METADATA,sha256=FFZSFwnT_V9wmwYqSBxIlVn0-9fxaZB-YJAgXvs4cnU,3357
-dcicutils-8.8.1.1b11.dist-info/WHEEL,sha256=7Z8_27uaHI_UZAc4Uox4PpBhQ9Y5_modZXWMxtUi4NU,88
-dcicutils-8.8.1.1b11.dist-info/entry_points.txt,sha256=51Q4F_2V10L0282W7HFjP4jdzW4K8lnWDARJQVFy_hw,270
-dcicutils-8.8.1.1b11.dist-info/RECORD,,
+dcicutils-8.8.1.1b14.dist-info/LICENSE.txt,sha256=qnwSmfnEWMl5l78VPDEzAmEbLVrRqQvfUQiHT0ehrOo,1102
+dcicutils-8.8.1.1b14.dist-info/METADATA,sha256=YiXA1L0U61X0DYn4jYZDrse-Svuch4htMTnNCU4-n7k,3357
+dcicutils-8.8.1.1b14.dist-info/WHEEL,sha256=7Z8_27uaHI_UZAc4Uox4PpBhQ9Y5_modZXWMxtUi4NU,88
+dcicutils-8.8.1.1b14.dist-info/entry_points.txt,sha256=51Q4F_2V10L0282W7HFjP4jdzW4K8lnWDARJQVFy_hw,270
+dcicutils-8.8.1.1b14.dist-info/RECORD,,