dcicutils 8.8.0.1b11__py3-none-any.whl → 8.8.0.1b13__py3-none-any.whl

dcicutils/structured_data.py

@@ -6,6 +6,7 @@ import os
 from pyramid.router import Router
 import re
 import sys
+import time
 from tqdm import tqdm
 from typing import Any, Callable, List, Optional, Tuple, Type, Union
 from webtest.app import TestApp
@@ -69,7 +70,8 @@ class StructuredDataSet:
                  order: Optional[List[str]] = None, prune: bool = True,
                  ref_lookup_strategy: Optional[Callable] = None,
                  ref_lookup_nocache: bool = False,
-                 progress: bool = False) -> None:
+                 progress: bool = False,
+                 debug_sleep: Optional[str] = None) -> None:
         progress = False
         self._progress = progress
         self._data = {}
@@ -83,6 +85,12 @@ class StructuredDataSet:
         self._resolved_refs = set()
         self._validated = False
         self._autoadd_properties = autoadd if isinstance(autoadd, dict) and autoadd else None
+        self._debug_sleep = None
+        if debug_sleep:
+            try:
+                self._debug_sleep = float(debug_sleep)
+            except Exception:
+                self._debug_sleep = None
         self._load_file(file) if file else None
 
     def _progress_add(self, amount: Union[int, Callable]) -> None:
@@ -113,9 +121,10 @@ class StructuredDataSet:
              schemas: Optional[List[dict]] = None, autoadd: Optional[dict] = None,
              order: Optional[List[str]] = None, prune: bool = True,
              ref_lookup_strategy: Optional[Callable] = None,
-             ref_lookup_nocache: bool = False) -> StructuredDataSet:
+             ref_lookup_nocache: bool = False, debug_sleep: Optional[str] = None) -> StructuredDataSet:
         return StructuredDataSet(file=file, portal=portal, schemas=schemas, autoadd=autoadd, order=order, prune=prune,
-                                 ref_lookup_strategy=ref_lookup_strategy, ref_lookup_nocache=ref_lookup_nocache)
+                                 ref_lookup_strategy=ref_lookup_strategy, ref_lookup_nocache=ref_lookup_nocache,
+                                 debug_sleep=debug_sleep)
 
     def validate(self, force: bool = False) -> None:
         def data_without_deleted_properties(data: dict) -> dict:
@@ -205,7 +214,7 @@ class StructuredDataSet:
                         diffs[object_type].append(create_readonly_object(path=identifying_path,
                                                                          uuid=existing_object.uuid,
                                                                          diffs=object_diffs or None))
-                    else:
+                    elif identifying_path:
                         # If there is no existing object we still create a record for this object
                         # but with no uuid which will be the indication that it does not exist.
                         diffs[object_type].append(create_readonly_object(path=identifying_path, uuid=None, diffs=None))
@@ -278,6 +287,8 @@ class StructuredDataSet:
         noschema = False
         structured_row_template = None
         for row in reader:
+            if self._debug_sleep:
+                time.sleep(float(self._debug_sleep))
             if not structured_row_template:  # Delay creation just so we don't reference schema if there are no rows.
                 if not schema and not noschema and not (schema := Schema.load_by_name(type_name, portal=self._portal)):
                     noschema = True

{dcicutils-8.8.0.1b11.dist-info → dcicutils-8.8.0.1b13.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dcicutils
-Version: 8.8.0.1b11
+Version: 8.8.0.1b13
 Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
 Home-page: https://github.com/4dn-dcic/utils
 License: MIT

{dcicutils-8.8.0.1b11.dist-info → dcicutils-8.8.0.1b13.dist-info}/RECORD

@@ -62,15 +62,15 @@ dcicutils/secrets_utils.py,sha256=8dppXAsiHhJzI6NmOcvJV5ldvKkQZzh3Fl-cb8Wm7MI,19
 dcicutils/sheet_utils.py,sha256=VlmzteONW5VF_Q4vo0yA5vesz1ViUah1MZ_yA1rwZ0M,33629
 dcicutils/snapshot_utils.py,sha256=ymP7PXH6-yEiXAt75w0ldQFciGNqWBClNxC5gfX2FnY,22961
 dcicutils/ssl_certificate_utils.py,sha256=F0ifz_wnRRN9dfrfsz7aCp4UDLgHEY8LaK7PjnNvrAQ,9707
-dcicutils/structured_data.py,sha256=mUk6NNyhgpjx9Vte3KS5sLGByJiTh4DsqutvdFyVVgE,52537
+dcicutils/structured_data.py,sha256=72nX3ijfc2QACqfyjWFlQIX-VX1B8RPRc4GA-Ly2G5E,52998
 dcicutils/task_utils.py,sha256=MF8ujmTD6-O2AC2gRGPHyGdUrVKgtr8epT5XU8WtNjk,8082
 dcicutils/tmpfile_utils.py,sha256=n95XF8dZVbQRSXBZTGToXXfSs3JUVRyN6c3ZZ0nhAWI,1403
 dcicutils/trace_utils.py,sha256=g8kwV4ebEy5kXW6oOrEAUsurBcCROvwtZqz9fczsGRE,1769
 dcicutils/validation_utils.py,sha256=cMZIU2cY98FYtzK52z5WUYck7urH6JcqOuz9jkXpqzg,14797
 dcicutils/variant_utils.py,sha256=2H9azNx3xAj-MySg-uZ2SFqbWs4kZvf61JnK6b-h4Qw,4343
 dcicutils/zip_utils.py,sha256=rnjNv_k6L9jT2SjDSgVXp4BEJYLtz9XN6Cl2Fy-tqnM,2027
-dcicutils-8.8.0.1b11.dist-info/LICENSE.txt,sha256=qnwSmfnEWMl5l78VPDEzAmEbLVrRqQvfUQiHT0ehrOo,1102
-dcicutils-8.8.0.1b11.dist-info/METADATA,sha256=FngKaVgxXMIK9eHOhFlx_ESyz9NgJaihgNCKqHZem9g,3357
-dcicutils-8.8.0.1b11.dist-info/WHEEL,sha256=7Z8_27uaHI_UZAc4Uox4PpBhQ9Y5_modZXWMxtUi4NU,88
-dcicutils-8.8.0.1b11.dist-info/entry_points.txt,sha256=51Q4F_2V10L0282W7HFjP4jdzW4K8lnWDARJQVFy_hw,270
-dcicutils-8.8.0.1b11.dist-info/RECORD,,
+dcicutils-8.8.0.1b13.dist-info/LICENSE.txt,sha256=qnwSmfnEWMl5l78VPDEzAmEbLVrRqQvfUQiHT0ehrOo,1102
+dcicutils-8.8.0.1b13.dist-info/METADATA,sha256=_QuHO_XVPM0VCTHDGz89YJGi4cAf4ApoaPZCGJW8rgU,3357
+dcicutils-8.8.0.1b13.dist-info/WHEEL,sha256=7Z8_27uaHI_UZAc4Uox4PpBhQ9Y5_modZXWMxtUi4NU,88
+dcicutils-8.8.0.1b13.dist-info/entry_points.txt,sha256=51Q4F_2V10L0282W7HFjP4jdzW4K8lnWDARJQVFy_hw,270
+dcicutils-8.8.0.1b13.dist-info/RECORD,,