dcicutils 8.5.0.1b3__py3-none-any.whl → 8.5.0.1b4__py3-none-any.whl

dcicutils/portal_utils.py

@@ -23,15 +23,14 @@ class Portal:
     2. From a key dictionary, containing "key" and "secret" property values.
     3. From a key tuple, containing (in order) a key and secret values.
     4. From a keys file assumed to reside in ~/.{app}-keys.json where the given "app" value is either "smaht", "cgap",
-       or "fourfront"; and where this file is assumed to contain a dictionary with a key equal to the given "env"
-       value (e.g. smaht-localhost) and with a dictionary value containing "key" and "secret" property values; if
-       an "app" value is not specified but the given "env" value begins with one of the app values then that value
-       will be used, i.e. e.g. if env is "smaht-localhost" and app is unspecified than it is assumed to be "smaht".
+       or "fourfront"; where is assumed to contain a dictionary with a key for the given "env" value, e.g. smaht-local;
+       and with a dictionary value containing "key" and "secret" property values, and an optional "server" property;
+       if an "app" value is not specified but the given "env" value begins with one of the app values then that value
+       will be used, i.e. e.g. if "env" is "smaht-local" and app is unspecified than it is assumed to be "smaht".
     5. From a keys file as described above (#4) but rather than be identified by the given "env" value it
-       is looked up by the given "server" name and the "server" key dictionary value in the key file.
+       is looked up via the given "server" name and the "server" key dictionary value in the key file.
     6. From a given "vapp" value (which is assumed to be a TestApp or VirtualApp).
-    7. From another Portal object.
-    8. From a a pyramid Router object.
+    7. From another Portal object; or from a a pyramid Router object.
     """
     def __init__(self,
                  arg: Optional[Union[VirtualApp, TestApp, Router, Portal, dict, tuple, str]] = None,

dcicutils/structured_data.py

@@ -42,8 +42,8 @@ StructuredDataSet = Type["StructuredDataSet"]
 class StructuredDataSet:
 
     def __init__(self, file: Optional[str] = None, portal: Optional[Union[VirtualApp, TestApp, Portal]] = None,
-                 schemas: Optional[List[dict]] = None, data: Optional[List[dict]] = None,
-                 order: Optional[List[str]] = None, prune: bool = True) -> None:
+                 schemas: Optional[List[dict]] = None, autoadd: Optional[dict] = None,
+                 data: Optional[List[dict]] = None, order: Optional[List[str]] = None, prune: bool = True) -> None:
         self.data = {} if not data else data  # If portal is None then no schemas nor refs.
         self._portal = Portal(portal, data=self.data, schemas=schemas) if portal else None
         self._order = order
@@ -52,13 +52,14 @@ class StructuredDataSet:
         self._errors = {}
         self._resolved_refs = set()
         self._validated = False
+        self._autoadd_properties = autoadd if isinstance(autoadd, dict) and autoadd else None
         self._load_file(file) if file else None
 
     @staticmethod
     def load(file: str, portal: Optional[Union[VirtualApp, TestApp, Portal]] = None,
-             schemas: Optional[List[dict]] = None,
+             schemas: Optional[List[dict]] = None, autoadd: Optional[dict] = None,
              order: Optional[List[str]] = None, prune: bool = True) -> StructuredDataSet:
-        return StructuredDataSet(file=file, portal=portal, schemas=schemas, order=order, prune=prune)
+        return StructuredDataSet(file=file, portal=portal, schemas=schemas, autoadd=autoadd, order=order, prune=prune)
 
     def validate(self, force: bool = False) -> None:
         if self._validated and not force:
@@ -163,6 +164,8 @@ class StructuredDataSet:
             structured_row = structured_row_template.create_row()
             for column_name, value in row.items():
                 structured_row_template.set_value(structured_row, column_name, value, reader.file, reader.row_number)
+                if self._autoadd_properties:
+                    self._add_properties(structured_row, self._autoadd_properties, schema)
             self._add(type_name, structured_row)
         self._note_warning(reader.warnings, "reader")
         if schema:
@@ -177,6 +180,11 @@ class StructuredDataSet:
         else:
             self.data[type_name] = [data] if isinstance(data, dict) else data
 
+    def _add_properties(self, structured_row: dict, properties: dict, schema: Optional[dict] = None) -> None:
+        for name in properties:
+            if name not in structured_row and (not schema or schema.data.get("properties", {}).get(name)):
+                structured_row[name] = properties[name]
+
     def _note_warning(self, item: Optional[Union[dict, List[dict]]], group: str) -> None:
         self._note_issue(self._warnings, item, group)
 

{dcicutils-8.5.0.1b3.dist-info → dcicutils-8.5.0.1b4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dcicutils
-Version: 8.5.0.1b3
+Version: 8.5.0.1b4
 Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
 Home-page: https://github.com/4dn-dcic/utils
 License: MIT

{dcicutils-8.5.0.1b3.dist-info → dcicutils-8.5.0.1b4.dist-info}/RECORD

@@ -43,7 +43,7 @@ dcicutils/log_utils.py,sha256=7pWMc6vyrorUZQf-V-M3YC6zrPgNhuV_fzm9xqTPph0,10883
 dcicutils/misc_utils.py,sha256=nRjLEORY35YmJwTjO0fnauBPznaI_bkVasIW8PccDYM,100179
 dcicutils/obfuscation_utils.py,sha256=fo2jOmDRC6xWpYX49u80bVNisqRRoPskFNX3ymFAmjw,5963
 dcicutils/opensearch_utils.py,sha256=V2exmFYW8Xl2_pGFixF4I2Cc549Opwe4PhFi5twC0M8,1017
-dcicutils/portal_utils.py,sha256=Jp33fgq3wKKYVMQw851EUKgayrQL9_xsm8NKyAP0Vy4,14553
+dcicutils/portal_utils.py,sha256=Wh918ZKpUJFbt7w6Bn5G7v-0k6ImOUWMFmE9Oxt1ZN4,14560
 dcicutils/project_utils.py,sha256=qPdCaFmWUVBJw4rw342iUytwdQC0P-XKpK4mhyIulMM,31250
 dcicutils/qa_checkers.py,sha256=cdXjeL0jCDFDLT8VR8Px78aS10hwNISOO5G_Zv2TZ6M,20534
 dcicutils/qa_utils.py,sha256=TT0SiJWiuxYvbsIyhK9VO4uV_suxhB6CpuC4qPacCzQ,160208
@@ -56,14 +56,14 @@ dcicutils/secrets_utils.py,sha256=8dppXAsiHhJzI6NmOcvJV5ldvKkQZzh3Fl-cb8Wm7MI,19
 dcicutils/sheet_utils.py,sha256=VlmzteONW5VF_Q4vo0yA5vesz1ViUah1MZ_yA1rwZ0M,33629
 dcicutils/snapshot_utils.py,sha256=ymP7PXH6-yEiXAt75w0ldQFciGNqWBClNxC5gfX2FnY,22961
 dcicutils/ssl_certificate_utils.py,sha256=F0ifz_wnRRN9dfrfsz7aCp4UDLgHEY8LaK7PjnNvrAQ,9707
-dcicutils/structured_data.py,sha256=8jEPKeoVOcqhG_i-H6cK4zBXTUFpFi_9ykw5g1h0n4g,32690
+dcicutils/structured_data.py,sha256=tMKBhq6OuM2t6iDxIPBFcxV66MiwmOHTBeACxhvkbiQ,33307
 dcicutils/task_utils.py,sha256=MF8ujmTD6-O2AC2gRGPHyGdUrVKgtr8epT5XU8WtNjk,8082
 dcicutils/trace_utils.py,sha256=g8kwV4ebEy5kXW6oOrEAUsurBcCROvwtZqz9fczsGRE,1769
 dcicutils/validation_utils.py,sha256=cMZIU2cY98FYtzK52z5WUYck7urH6JcqOuz9jkXpqzg,14797
 dcicutils/variant_utils.py,sha256=2H9azNx3xAj-MySg-uZ2SFqbWs4kZvf61JnK6b-h4Qw,4343
 dcicutils/zip_utils.py,sha256=0OXR0aLNwyLIZOzIFTM_5DOun7dxIv6TIZbFiithkO0,3276
-dcicutils-8.5.0.1b3.dist-info/LICENSE.txt,sha256=t0_-jIjqxNnymZoNJe-OltRIuuF8qfhN0ATlHyrUJPk,1102
-dcicutils-8.5.0.1b3.dist-info/METADATA,sha256=xLOqwEx3paC3otYf4koYSgOZ8WekQIkBVaKZrF-tH84,3314
-dcicutils-8.5.0.1b3.dist-info/WHEEL,sha256=7Z8_27uaHI_UZAc4Uox4PpBhQ9Y5_modZXWMxtUi4NU,88
-dcicutils-8.5.0.1b3.dist-info/entry_points.txt,sha256=8wbw5csMIgBXhkwfgsgJeuFcoUc0WsucUxmOyml2aoA,209
-dcicutils-8.5.0.1b3.dist-info/RECORD,,
+dcicutils-8.5.0.1b4.dist-info/LICENSE.txt,sha256=t0_-jIjqxNnymZoNJe-OltRIuuF8qfhN0ATlHyrUJPk,1102
+dcicutils-8.5.0.1b4.dist-info/METADATA,sha256=Zpf8fTsgsuRfo8WDGkONHxtcf4SPWOFK_4iCNVAhB78,3314
+dcicutils-8.5.0.1b4.dist-info/WHEEL,sha256=7Z8_27uaHI_UZAc4Uox4PpBhQ9Y5_modZXWMxtUi4NU,88
+dcicutils-8.5.0.1b4.dist-info/entry_points.txt,sha256=8wbw5csMIgBXhkwfgsgJeuFcoUc0WsucUxmOyml2aoA,209
+dcicutils-8.5.0.1b4.dist-info/RECORD,,