dcicutils 8.14.0.1b20__py3-none-any.whl → 8.14.0.1b21__py3-none-any.whl

dcicutils/scripts/update_portal_object.py

@@ -2,16 +2,9 @@
 # Command-line utility to update (post, patch, upsert) portal objects for SMaHT/CGAP/Fourfront.
 # ------------------------------------------------------------------------------------------------------
 # Example commands:
-#
-# update-portal-object --load {json-file | directory-with-json-files}
-# update-portal-object --post {json-file | directory-with-json-files}
-# update-portal-object --upsert {json-file | directory-with-json-files}
-# update-portal-object --patch {json-file | directory-with-json-files}
-#
-# The specified json-file or file withing directory-with-jaon-files must be JSON containing either
-# a list of objects, which which case the file name for the target schema name, or if not, then
-# the --schema option must be used to specified the target schema; or the JSON must be a dictionary
-# of schema names, where the value of each is a list of objects for that schema.
+# update-portal-object --post file_format.json
+# update-portal-object --upsert directory-with-schema-named-dot-json-files
+# update-portal-object --patch file-not-named-for-schema-name.json --schema UnalignedReads
 # --------------------------------------------------------------------------------------------------
 
 import argparse
@@ -471,7 +464,8 @@ def _load_data(portal: Portal, load: str, ini_file: str, explicit_schema_name: O
                 # view_name: \\\'22813a02-906b-4b60-b2b2-4afaea24aa28\\\', subpath: (), traversed: (), root:
                 # <encoded.root.SMAHTRoot object at 0x136d41460>, vroot: <encoded.root.SMAHTRoot object at 0x136d41460>, vroot_path: ()"}\' # noqa
                 #
-                if (item_type := re.search(r"https?://.*/(.*)\?skip_indexing=.*", item)) and (len(item_type.groups()) == 1):  # noqa
+                if ((item_type := re.search(r"https?://.*/(.*)\?skip_indexing=.*", item)) and
+                    (len(item_type.groups()) == 1)):  # noqa
                     item_type = to_snake_case(item_type.group(1))
                     identifying_value = f"/{to_camel_case(item_type)}{identifying_value}"
                 unresolved_link_error_message_prefix = "Unable to resolve link:"
@@ -634,7 +628,7 @@ def _load_data(portal: Portal, load: str, ini_file: str, explicit_schema_name: O
         _print(f"Total items loaded: {loadxl_total_item_count // 2}"  # TODO: straightend out this arithmetic
                f"{f' (errors: {loadxl_total_error_count})' if loadxl_total_error_count else ''}")
         for item in sorted(loadxl_summary.keys()):
-            _print(f"▷ {to_camel_case(item)}: {loadxl_summary[item] // 2}")  # TODO: straightend out this arithmetic
+            _print(f"▷ {to_camel_case(item)}: {loadxl_summary[item]}")
     if loadxl_unresolved:
         _print("✗ Unresolved references:")
         for item in loadxl_unresolved:

{dcicutils-8.14.0.1b20.dist-info → dcicutils-8.14.0.1b21.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dcicutils
-Version: 8.14.0.1b20
+Version: 8.14.0.1b21
 Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
 Home-page: https://github.com/4dn-dcic/utils
 License: MIT

{dcicutils-8.14.0.1b20.dist-info → dcicutils-8.14.0.1b21.dist-info}/RECORD

@@ -60,7 +60,7 @@ dcicutils/s3_utils.py,sha256=h2B9ftOo-kxqfiKth5ZDC_cAUFy1Pbu7BrVanFnE5Iw,28839
 dcicutils/schema_utils.py,sha256=GmRm-XqZKJ6qine16SQF1txcby9WougDav_sYmKNs9E,12400
 dcicutils/scripts/publish_to_pypi.py,sha256=sMd4WASQGlxlh7uLrt2eGkFRXYgONVmvIg8mClMS5RQ,13903
 dcicutils/scripts/run_license_checker.py,sha256=z2keYnRDZsHQbTeo1XORAXSXNJK5axVzL5LjiNqZ7jE,4184
-dcicutils/scripts/update_portal_object.py,sha256=pRTzbfT4Ul64KwlBJa6cqfNRDIqPh2Uyi9BmXeAjoeU,40135
+dcicutils/scripts/update_portal_object.py,sha256=_Wk9UYcT4XQKQQoqyTmiNEEh0ttY3TG1vMATsHr8W2Y,39661
 dcicutils/scripts/view_portal_object.py,sha256=lcgXWH9ooVf7tJDIRnoFGOgT0wYLGhiJlJW3a9w6A_c,36983
 dcicutils/secrets_utils.py,sha256=8dppXAsiHhJzI6NmOcvJV5ldvKkQZzh3Fl-cb8Wm7MI,19745
 dcicutils/sheet_utils.py,sha256=VlmzteONW5VF_Q4vo0yA5vesz1ViUah1MZ_yA1rwZ0M,33629
@@ -75,8 +75,8 @@ dcicutils/trace_utils.py,sha256=g8kwV4ebEy5kXW6oOrEAUsurBcCROvwtZqz9fczsGRE,1769
 dcicutils/validation_utils.py,sha256=cMZIU2cY98FYtzK52z5WUYck7urH6JcqOuz9jkXpqzg,14797
 dcicutils/variant_utils.py,sha256=2H9azNx3xAj-MySg-uZ2SFqbWs4kZvf61JnK6b-h4Qw,4343
 dcicutils/zip_utils.py,sha256=_Y9EmL3D2dUZhxucxHvrtmmlbZmK4FpSsHEb7rGSJLU,3265
-dcicutils-8.14.0.1b20.dist-info/LICENSE.txt,sha256=qnwSmfnEWMl5l78VPDEzAmEbLVrRqQvfUQiHT0ehrOo,1102
-dcicutils-8.14.0.1b20.dist-info/METADATA,sha256=Np8qj0ub4xemqdy_VUXifuUwyiHPQ_5ya0ZpPabBC3M,3440
-dcicutils-8.14.0.1b20.dist-info/WHEEL,sha256=7Z8_27uaHI_UZAc4Uox4PpBhQ9Y5_modZXWMxtUi4NU,88
-dcicutils-8.14.0.1b20.dist-info/entry_points.txt,sha256=W6kEWdUJk9tQ4myAgpehPdebcwvCAZ7UgB-wyPgDUMg,335
-dcicutils-8.14.0.1b20.dist-info/RECORD,,
+dcicutils-8.14.0.1b21.dist-info/LICENSE.txt,sha256=qnwSmfnEWMl5l78VPDEzAmEbLVrRqQvfUQiHT0ehrOo,1102
+dcicutils-8.14.0.1b21.dist-info/METADATA,sha256=dBs3CAErEqR7h0pLE7K9CZKVJw5FOcSk1JCuZo7ZkZg,3440
+dcicutils-8.14.0.1b21.dist-info/WHEEL,sha256=7Z8_27uaHI_UZAc4Uox4PpBhQ9Y5_modZXWMxtUi4NU,88
+dcicutils-8.14.0.1b21.dist-info/entry_points.txt,sha256=W6kEWdUJk9tQ4myAgpehPdebcwvCAZ7UgB-wyPgDUMg,335
+dcicutils-8.14.0.1b21.dist-info/RECORD,,