dcicutils 8.13.3.1b16__py3-none-any.whl → 8.13.3.1b18__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
dcicutils/misc_utils.py CHANGED
@@ -3,7 +3,7 @@ This file contains functions that might be generally useful.
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  """
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  from collections import namedtuple
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- from collections.abc import Iterable
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+ from typing import Iterable # would prefer this but error from Python 3.8: from collections.abc import Iterable
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  import appdirs
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  from copy import deepcopy
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  import concurrent.futures
@@ -531,6 +531,18 @@ class StructuredDataSet:
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  issues[group] = []
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  issues[group].extend(item)
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+ def note_validation_error(self, validation_error: str,
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+ schema_name: Optional[str] = None, row_number: Optional[int] = None) -> None:
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+ if isinstance(validation_error, str) and validation_error:
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+ if isinstance(schema_name, str) and schema_name:
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+ if isinstance(row_number, int):
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+ src = create_dict(type=schema_name, row=row_number)
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+ else:
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+ src = create_dict(type=schema_name)
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+ else:
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+ src = None
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+ self._note_error({"src": src, "error": validation_error}, "validation")
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+
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  class _StructuredRowTemplate:
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@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: dcicutils
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- Version: 8.13.3.1b16
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+ Version: 8.13.3.1b18
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  Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
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  Home-page: https://github.com/4dn-dcic/utils
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  License: MIT
@@ -45,7 +45,7 @@ dcicutils/license_policies/park-lab-gpl-pipeline.jsonc,sha256=vLZkwm3Js-kjV44nug
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  dcicutils/license_policies/park-lab-pipeline.jsonc,sha256=9qlY0ASy3iUMQlr3gorVcXrSfRHnVGbLhkS427UaRy4,283
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  dcicutils/license_utils.py,sha256=2Yxnh1T1iuMe6wluwbvpFO_zYSGPxB4-STAMc-vz-YM,47202
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  dcicutils/log_utils.py,sha256=7pWMc6vyrorUZQf-V-M3YC6zrPgNhuV_fzm9xqTPph0,10883
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- dcicutils/misc_utils.py,sha256=6BM6V6ZVtVARpfvv8zEgymNlxLzW8z-qIS99D_z94no,112580
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+ dcicutils/misc_utils.py,sha256=m-b32XaIYEfAr6UAOZRmXgLOdWlXp3AXH_OIkM8NKGQ,112656
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  dcicutils/obfuscation_utils.py,sha256=fo2jOmDRC6xWpYX49u80bVNisqRRoPskFNX3ymFAmjw,5963
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  dcicutils/opensearch_utils.py,sha256=V2exmFYW8Xl2_pGFixF4I2Cc549Opwe4PhFi5twC0M8,1017
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  dcicutils/portal_object_utils.py,sha256=Az3n1aL-PQkN5gOFE6ZqC2XkYsqiwKlq7-tZggs1QN4,11062
@@ -66,7 +66,7 @@ dcicutils/secrets_utils.py,sha256=8dppXAsiHhJzI6NmOcvJV5ldvKkQZzh3Fl-cb8Wm7MI,19
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  dcicutils/sheet_utils.py,sha256=VlmzteONW5VF_Q4vo0yA5vesz1ViUah1MZ_yA1rwZ0M,33629
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  dcicutils/snapshot_utils.py,sha256=YDeI3vD-MhAtHwKDzfEm2q-n3l-da2yRpRR3xp0Ah1M,23021
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  dcicutils/ssl_certificate_utils.py,sha256=F0ifz_wnRRN9dfrfsz7aCp4UDLgHEY8LaK7PjnNvrAQ,9707
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- dcicutils/structured_data.py,sha256=1w832RpR6pKklRyV4KgMnTkL8PBlCOhwKZ8ED88dMjE,64761
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+ dcicutils/structured_data.py,sha256=vf6ocSmE5eg9y0-zGNNhESKQJ9aqv-m5y0iEwMuttVE,65384
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  dcicutils/submitr/progress_constants.py,sha256=5bxyX77ql8qEJearfHEvsvXl7D0GuUODW0T65mbRmnE,2895
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  dcicutils/submitr/ref_lookup_strategy.py,sha256=VJN-Oo0LLna6Vo2cu47eC-eU-yUC9NFlQP29xajejVU,4741
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  dcicutils/task_utils.py,sha256=MF8ujmTD6-O2AC2gRGPHyGdUrVKgtr8epT5XU8WtNjk,8082
@@ -75,8 +75,8 @@ dcicutils/trace_utils.py,sha256=g8kwV4ebEy5kXW6oOrEAUsurBcCROvwtZqz9fczsGRE,1769
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  dcicutils/validation_utils.py,sha256=cMZIU2cY98FYtzK52z5WUYck7urH6JcqOuz9jkXpqzg,14797
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  dcicutils/variant_utils.py,sha256=2H9azNx3xAj-MySg-uZ2SFqbWs4kZvf61JnK6b-h4Qw,4343
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  dcicutils/zip_utils.py,sha256=_Y9EmL3D2dUZhxucxHvrtmmlbZmK4FpSsHEb7rGSJLU,3265
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- dcicutils-8.13.3.1b16.dist-info/LICENSE.txt,sha256=qnwSmfnEWMl5l78VPDEzAmEbLVrRqQvfUQiHT0ehrOo,1102
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- dcicutils-8.13.3.1b16.dist-info/METADATA,sha256=shc6O7nqhx1QAchJHbpNdQdeCNyO5-lDqGz6c9W9UqE,3440
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- dcicutils-8.13.3.1b16.dist-info/WHEEL,sha256=7Z8_27uaHI_UZAc4Uox4PpBhQ9Y5_modZXWMxtUi4NU,88
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- dcicutils-8.13.3.1b16.dist-info/entry_points.txt,sha256=W6kEWdUJk9tQ4myAgpehPdebcwvCAZ7UgB-wyPgDUMg,335
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- dcicutils-8.13.3.1b16.dist-info/RECORD,,
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+ dcicutils-8.13.3.1b18.dist-info/LICENSE.txt,sha256=qnwSmfnEWMl5l78VPDEzAmEbLVrRqQvfUQiHT0ehrOo,1102
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+ dcicutils-8.13.3.1b18.dist-info/METADATA,sha256=Al9Z2Zu1OZxI7wGZfCzgdzZvNteYQroWJqMDO3sck4A,3440
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+ dcicutils-8.13.3.1b18.dist-info/WHEEL,sha256=7Z8_27uaHI_UZAc4Uox4PpBhQ9Y5_modZXWMxtUi4NU,88
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+ dcicutils-8.13.3.1b18.dist-info/entry_points.txt,sha256=W6kEWdUJk9tQ4myAgpehPdebcwvCAZ7UgB-wyPgDUMg,335
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+ dcicutils-8.13.3.1b18.dist-info/RECORD,,