dcicutils 8.13.3.1b16__py3-none-any.whl → 8.13.3.1b18__py3-none-any.whl

dcicutils/misc_utils.py

@@ -3,7 +3,7 @@ This file contains functions that might be generally useful.
 """
 
 from collections import namedtuple
-from collections.abc import Iterable
+from typing import Iterable  # would prefer this but error from Python 3.8: from collections.abc import Iterable
 import appdirs
 from copy import deepcopy
 import concurrent.futures

dcicutils/structured_data.py

@@ -531,6 +531,18 @@ class StructuredDataSet:
                 issues[group] = []
             issues[group].extend(item)
 
+    def note_validation_error(self, validation_error: str,
+                              schema_name: Optional[str] = None, row_number: Optional[int] = None) -> None:
+        if isinstance(validation_error, str) and validation_error:
+            if isinstance(schema_name, str) and schema_name:
+                if isinstance(row_number, int):
+                    src = create_dict(type=schema_name, row=row_number)
+                else:
+                    src = create_dict(type=schema_name)
+            else:
+                src = None
+            self._note_error({"src": src, "error": validation_error}, "validation")
+
 
 class _StructuredRowTemplate:
 

{dcicutils-8.13.3.1b16.dist-info → dcicutils-8.13.3.1b18.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dcicutils
-Version: 8.13.3.1b16
+Version: 8.13.3.1b18
 Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
 Home-page: https://github.com/4dn-dcic/utils
 License: MIT

{dcicutils-8.13.3.1b16.dist-info → dcicutils-8.13.3.1b18.dist-info}/RECORD

@@ -45,7 +45,7 @@ dcicutils/license_policies/park-lab-gpl-pipeline.jsonc,sha256=vLZkwm3Js-kjV44nug
 dcicutils/license_policies/park-lab-pipeline.jsonc,sha256=9qlY0ASy3iUMQlr3gorVcXrSfRHnVGbLhkS427UaRy4,283
 dcicutils/license_utils.py,sha256=2Yxnh1T1iuMe6wluwbvpFO_zYSGPxB4-STAMc-vz-YM,47202
 dcicutils/log_utils.py,sha256=7pWMc6vyrorUZQf-V-M3YC6zrPgNhuV_fzm9xqTPph0,10883
-dcicutils/misc_utils.py,sha256=6BM6V6ZVtVARpfvv8zEgymNlxLzW8z-qIS99D_z94no,112580
+dcicutils/misc_utils.py,sha256=m-b32XaIYEfAr6UAOZRmXgLOdWlXp3AXH_OIkM8NKGQ,112656
 dcicutils/obfuscation_utils.py,sha256=fo2jOmDRC6xWpYX49u80bVNisqRRoPskFNX3ymFAmjw,5963
 dcicutils/opensearch_utils.py,sha256=V2exmFYW8Xl2_pGFixF4I2Cc549Opwe4PhFi5twC0M8,1017
 dcicutils/portal_object_utils.py,sha256=Az3n1aL-PQkN5gOFE6ZqC2XkYsqiwKlq7-tZggs1QN4,11062
@@ -66,7 +66,7 @@ dcicutils/secrets_utils.py,sha256=8dppXAsiHhJzI6NmOcvJV5ldvKkQZzh3Fl-cb8Wm7MI,19
 dcicutils/sheet_utils.py,sha256=VlmzteONW5VF_Q4vo0yA5vesz1ViUah1MZ_yA1rwZ0M,33629
 dcicutils/snapshot_utils.py,sha256=YDeI3vD-MhAtHwKDzfEm2q-n3l-da2yRpRR3xp0Ah1M,23021
 dcicutils/ssl_certificate_utils.py,sha256=F0ifz_wnRRN9dfrfsz7aCp4UDLgHEY8LaK7PjnNvrAQ,9707
-dcicutils/structured_data.py,sha256=1w832RpR6pKklRyV4KgMnTkL8PBlCOhwKZ8ED88dMjE,64761
+dcicutils/structured_data.py,sha256=vf6ocSmE5eg9y0-zGNNhESKQJ9aqv-m5y0iEwMuttVE,65384
 dcicutils/submitr/progress_constants.py,sha256=5bxyX77ql8qEJearfHEvsvXl7D0GuUODW0T65mbRmnE,2895
 dcicutils/submitr/ref_lookup_strategy.py,sha256=VJN-Oo0LLna6Vo2cu47eC-eU-yUC9NFlQP29xajejVU,4741
 dcicutils/task_utils.py,sha256=MF8ujmTD6-O2AC2gRGPHyGdUrVKgtr8epT5XU8WtNjk,8082
@@ -75,8 +75,8 @@ dcicutils/trace_utils.py,sha256=g8kwV4ebEy5kXW6oOrEAUsurBcCROvwtZqz9fczsGRE,1769
 dcicutils/validation_utils.py,sha256=cMZIU2cY98FYtzK52z5WUYck7urH6JcqOuz9jkXpqzg,14797
 dcicutils/variant_utils.py,sha256=2H9azNx3xAj-MySg-uZ2SFqbWs4kZvf61JnK6b-h4Qw,4343
 dcicutils/zip_utils.py,sha256=_Y9EmL3D2dUZhxucxHvrtmmlbZmK4FpSsHEb7rGSJLU,3265
-dcicutils-8.13.3.1b16.dist-info/LICENSE.txt,sha256=qnwSmfnEWMl5l78VPDEzAmEbLVrRqQvfUQiHT0ehrOo,1102
-dcicutils-8.13.3.1b16.dist-info/METADATA,sha256=shc6O7nqhx1QAchJHbpNdQdeCNyO5-lDqGz6c9W9UqE,3440
-dcicutils-8.13.3.1b16.dist-info/WHEEL,sha256=7Z8_27uaHI_UZAc4Uox4PpBhQ9Y5_modZXWMxtUi4NU,88
-dcicutils-8.13.3.1b16.dist-info/entry_points.txt,sha256=W6kEWdUJk9tQ4myAgpehPdebcwvCAZ7UgB-wyPgDUMg,335
-dcicutils-8.13.3.1b16.dist-info/RECORD,,
+dcicutils-8.13.3.1b18.dist-info/LICENSE.txt,sha256=qnwSmfnEWMl5l78VPDEzAmEbLVrRqQvfUQiHT0ehrOo,1102
+dcicutils-8.13.3.1b18.dist-info/METADATA,sha256=Al9Z2Zu1OZxI7wGZfCzgdzZvNteYQroWJqMDO3sck4A,3440
+dcicutils-8.13.3.1b18.dist-info/WHEEL,sha256=7Z8_27uaHI_UZAc4Uox4PpBhQ9Y5_modZXWMxtUi4NU,88
+dcicutils-8.13.3.1b18.dist-info/entry_points.txt,sha256=W6kEWdUJk9tQ4myAgpehPdebcwvCAZ7UgB-wyPgDUMg,335
+dcicutils-8.13.3.1b18.dist-info/RECORD,,