dcicutils 8.13.3.1b16__py3-none-any.whl → 8.13.3.1b18__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (7) hide show
  1. dcicutils/misc_utils.py +1 -1
  2. dcicutils/structured_data.py +12 -0
  3. {dcicutils-8.13.3.1b16.dist-info → dcicutils-8.13.3.1b18.dist-info}/METADATA +1 -1
  4. {dcicutils-8.13.3.1b16.dist-info → dcicutils-8.13.3.1b18.dist-info}/RECORD +7 -7
  5. {dcicutils-8.13.3.1b16.dist-info → dcicutils-8.13.3.1b18.dist-info}/LICENSE.txt +0 -0
  6. {dcicutils-8.13.3.1b16.dist-info → dcicutils-8.13.3.1b18.dist-info}/WHEEL +0 -0
  7. {dcicutils-8.13.3.1b16.dist-info → dcicutils-8.13.3.1b18.dist-info}/entry_points.txt +0 -0
dcicutils/misc_utils.py CHANGED
@@ -3,7 +3,7 @@ This file contains functions that might be generally useful.
3
3
  """
4
4
 
5
5
  from collections import namedtuple
6
- from collections.abc import Iterable
6
+ from typing import Iterable # would prefer this but error from Python 3.8: from collections.abc import Iterable
7
7
  import appdirs
8
8
  from copy import deepcopy
9
9
  import concurrent.futures
dcicutils/structured_data.py CHANGED
@@ -531,6 +531,18 @@ class StructuredDataSet:
531
531
  issues[group] = []
532
532
  issues[group].extend(item)
533
533
 
534
+ def note_validation_error(self, validation_error: str,
535
+ schema_name: Optional[str] = None, row_number: Optional[int] = None) -> None:
536
+ if isinstance(validation_error, str) and validation_error:
537
+ if isinstance(schema_name, str) and schema_name:
538
+ if isinstance(row_number, int):
539
+ src = create_dict(type=schema_name, row=row_number)
540
+ else:
541
+ src = create_dict(type=schema_name)
542
+ else:
543
+ src = None
544
+ self._note_error({"src": src, "error": validation_error}, "validation")
545
+
534
546
 
535
547
  class _StructuredRowTemplate:
536
548
 
{dcicutils-8.13.3.1b16.dist-info → dcicutils-8.13.3.1b18.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: dcicutils
3
- Version: 8.13.3.1b16
3
+ Version: 8.13.3.1b18
4
4
  Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
5
5
  Home-page: https://github.com/4dn-dcic/utils
6
6
  License: MIT
{dcicutils-8.13.3.1b16.dist-info → dcicutils-8.13.3.1b18.dist-info}/RECORD RENAMED
@@ -45,7 +45,7 @@ dcicutils/license_policies/park-lab-gpl-pipeline.jsonc,sha256=vLZkwm3Js-kjV44nug
45
45
  dcicutils/license_policies/park-lab-pipeline.jsonc,sha256=9qlY0ASy3iUMQlr3gorVcXrSfRHnVGbLhkS427UaRy4,283
46
46
  dcicutils/license_utils.py,sha256=2Yxnh1T1iuMe6wluwbvpFO_zYSGPxB4-STAMc-vz-YM,47202
47
47
  dcicutils/log_utils.py,sha256=7pWMc6vyrorUZQf-V-M3YC6zrPgNhuV_fzm9xqTPph0,10883
48
- dcicutils/misc_utils.py,sha256=6BM6V6ZVtVARpfvv8zEgymNlxLzW8z-qIS99D_z94no,112580
48
+ dcicutils/misc_utils.py,sha256=m-b32XaIYEfAr6UAOZRmXgLOdWlXp3AXH_OIkM8NKGQ,112656
49
49
  dcicutils/obfuscation_utils.py,sha256=fo2jOmDRC6xWpYX49u80bVNisqRRoPskFNX3ymFAmjw,5963
50
50
  dcicutils/opensearch_utils.py,sha256=V2exmFYW8Xl2_pGFixF4I2Cc549Opwe4PhFi5twC0M8,1017
51
51
  dcicutils/portal_object_utils.py,sha256=Az3n1aL-PQkN5gOFE6ZqC2XkYsqiwKlq7-tZggs1QN4,11062
@@ -66,7 +66,7 @@ dcicutils/secrets_utils.py,sha256=8dppXAsiHhJzI6NmOcvJV5ldvKkQZzh3Fl-cb8Wm7MI,19
66
66
  dcicutils/sheet_utils.py,sha256=VlmzteONW5VF_Q4vo0yA5vesz1ViUah1MZ_yA1rwZ0M,33629
67
67
  dcicutils/snapshot_utils.py,sha256=YDeI3vD-MhAtHwKDzfEm2q-n3l-da2yRpRR3xp0Ah1M,23021
68
68
  dcicutils/ssl_certificate_utils.py,sha256=F0ifz_wnRRN9dfrfsz7aCp4UDLgHEY8LaK7PjnNvrAQ,9707
69
- dcicutils/structured_data.py,sha256=1w832RpR6pKklRyV4KgMnTkL8PBlCOhwKZ8ED88dMjE,64761
69
+ dcicutils/structured_data.py,sha256=vf6ocSmE5eg9y0-zGNNhESKQJ9aqv-m5y0iEwMuttVE,65384
70
70
  dcicutils/submitr/progress_constants.py,sha256=5bxyX77ql8qEJearfHEvsvXl7D0GuUODW0T65mbRmnE,2895
71
71
  dcicutils/submitr/ref_lookup_strategy.py,sha256=VJN-Oo0LLna6Vo2cu47eC-eU-yUC9NFlQP29xajejVU,4741
72
72
  dcicutils/task_utils.py,sha256=MF8ujmTD6-O2AC2gRGPHyGdUrVKgtr8epT5XU8WtNjk,8082
@@ -75,8 +75,8 @@ dcicutils/trace_utils.py,sha256=g8kwV4ebEy5kXW6oOrEAUsurBcCROvwtZqz9fczsGRE,1769
75
75
  dcicutils/validation_utils.py,sha256=cMZIU2cY98FYtzK52z5WUYck7urH6JcqOuz9jkXpqzg,14797
76
76
  dcicutils/variant_utils.py,sha256=2H9azNx3xAj-MySg-uZ2SFqbWs4kZvf61JnK6b-h4Qw,4343
77
77
  dcicutils/zip_utils.py,sha256=_Y9EmL3D2dUZhxucxHvrtmmlbZmK4FpSsHEb7rGSJLU,3265
78
- dcicutils-8.13.3.1b16.dist-info/LICENSE.txt,sha256=qnwSmfnEWMl5l78VPDEzAmEbLVrRqQvfUQiHT0ehrOo,1102
79
- dcicutils-8.13.3.1b16.dist-info/METADATA,sha256=shc6O7nqhx1QAchJHbpNdQdeCNyO5-lDqGz6c9W9UqE,3440
80
- dcicutils-8.13.3.1b16.dist-info/WHEEL,sha256=7Z8_27uaHI_UZAc4Uox4PpBhQ9Y5_modZXWMxtUi4NU,88
81
- dcicutils-8.13.3.1b16.dist-info/entry_points.txt,sha256=W6kEWdUJk9tQ4myAgpehPdebcwvCAZ7UgB-wyPgDUMg,335
82
- dcicutils-8.13.3.1b16.dist-info/RECORD,,
78
+ dcicutils-8.13.3.1b18.dist-info/LICENSE.txt,sha256=qnwSmfnEWMl5l78VPDEzAmEbLVrRqQvfUQiHT0ehrOo,1102
79
+ dcicutils-8.13.3.1b18.dist-info/METADATA,sha256=Al9Z2Zu1OZxI7wGZfCzgdzZvNteYQroWJqMDO3sck4A,3440
80
+ dcicutils-8.13.3.1b18.dist-info/WHEEL,sha256=7Z8_27uaHI_UZAc4Uox4PpBhQ9Y5_modZXWMxtUi4NU,88
81
+ dcicutils-8.13.3.1b18.dist-info/entry_points.txt,sha256=W6kEWdUJk9tQ4myAgpehPdebcwvCAZ7UgB-wyPgDUMg,335
82
+ dcicutils-8.13.3.1b18.dist-info/RECORD,,