dbdicom 0.2.6__py3-none-any.whl → 0.3.1__py3-none-any.whl

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Files changed (52) hide show
  1. dbdicom/__init__.py +1 -28
  2. dbdicom/api.py +287 -0
  3. dbdicom/const.py +144 -0
  4. dbdicom/dataset.py +721 -0
  5. dbdicom/dbd.py +736 -0
  6. dbdicom/external/__pycache__/__init__.cpython-311.pyc +0 -0
  7. dbdicom/external/dcm4che/__pycache__/__init__.cpython-311.pyc +0 -0
  8. dbdicom/external/dcm4che/bin/__pycache__/__init__.cpython-311.pyc +0 -0
  9. dbdicom/register.py +527 -0
  10. dbdicom/{ds/types → sop_classes}/ct_image.py +2 -16
  11. dbdicom/{ds/types → sop_classes}/enhanced_mr_image.py +153 -26
  12. dbdicom/{ds/types → sop_classes}/mr_image.py +185 -140
  13. dbdicom/sop_classes/parametric_map.py +310 -0
  14. dbdicom/sop_classes/secondary_capture.py +140 -0
  15. dbdicom/sop_classes/segmentation.py +311 -0
  16. dbdicom/{ds/types → sop_classes}/ultrasound_multiframe_image.py +1 -15
  17. dbdicom/{ds/types → sop_classes}/xray_angiographic_image.py +2 -17
  18. dbdicom/utils/arrays.py +36 -0
  19. dbdicom/utils/files.py +0 -20
  20. dbdicom/utils/image.py +10 -629
  21. dbdicom-0.3.1.dist-info/METADATA +28 -0
  22. dbdicom-0.3.1.dist-info/RECORD +53 -0
  23. dbdicom/create.py +0 -457
  24. dbdicom/dro.py +0 -174
  25. dbdicom/ds/__init__.py +0 -10
  26. dbdicom/ds/create.py +0 -63
  27. dbdicom/ds/dataset.py +0 -869
  28. dbdicom/ds/dictionaries.py +0 -620
  29. dbdicom/ds/types/parametric_map.py +0 -226
  30. dbdicom/extensions/__init__.py +0 -9
  31. dbdicom/extensions/dipy.py +0 -448
  32. dbdicom/extensions/elastix.py +0 -503
  33. dbdicom/extensions/matplotlib.py +0 -107
  34. dbdicom/extensions/numpy.py +0 -271
  35. dbdicom/extensions/scipy.py +0 -1512
  36. dbdicom/extensions/skimage.py +0 -1030
  37. dbdicom/extensions/sklearn.py +0 -243
  38. dbdicom/extensions/vreg.py +0 -1390
  39. dbdicom/manager.py +0 -2132
  40. dbdicom/message.py +0 -119
  41. dbdicom/pipelines.py +0 -66
  42. dbdicom/record.py +0 -1893
  43. dbdicom/types/database.py +0 -107
  44. dbdicom/types/instance.py +0 -231
  45. dbdicom/types/patient.py +0 -40
  46. dbdicom/types/series.py +0 -2874
  47. dbdicom/types/study.py +0 -58
  48. dbdicom-0.2.6.dist-info/METADATA +0 -72
  49. dbdicom-0.2.6.dist-info/RECORD +0 -66
  50. {dbdicom-0.2.6.dist-info → dbdicom-0.3.1.dist-info}/WHEEL +0 -0
  51. {dbdicom-0.2.6.dist-info → dbdicom-0.3.1.dist-info}/licenses/LICENSE +0 -0
  52. {dbdicom-0.2.6.dist-info → dbdicom-0.3.1.dist-info}/top_level.txt +0 -0
dbdicom/ds/__init__.py DELETED
@@ -1,10 +0,0 @@
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- """subpackage ds
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-
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- Can ultimately be extracted as a separate package ds,
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- extending pydicom Dataset with extra functionality"""
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-
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- from dbdicom.ds.types.mr_image import MRImage
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- from dbdicom.ds.types.enhanced_mr_image import EnhancedMRImage
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- from dbdicom.ds.types.ultrasound_multiframe_image import UltrasoundMultiFrameImage
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- from dbdicom.ds.types.xray_angiographic_image import XrayAngiographicImage
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- from dbdicom.ds.create import read_dataset, new_dataset
dbdicom/ds/create.py DELETED
@@ -1,63 +0,0 @@
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- import pydicom
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-
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- from pydicom.dataset import Dataset
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- from dbdicom.ds.dataset import DbDataset
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- from dbdicom.ds.types.xray_angiographic_image import XrayAngiographicImage
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- from dbdicom.ds.types.ct_image import CTImage
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- from dbdicom.ds.types.mr_image import MRImage
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- from dbdicom.ds.types.enhanced_mr_image import EnhancedMRImage
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- from dbdicom.ds.types.ultrasound_multiframe_image import UltrasoundMultiFrameImage
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-
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- def SOPClass(SOPClassUID):
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-
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- if SOPClassUID == '1.2.840.10008.5.1.4.1.1.4':
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- return 'MRImage'
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- elif SOPClassUID == '1.2.840.10008.5.1.4.1.1.4.1':
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- return 'EnhancedMRImage'
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- elif SOPClassUID == '1.2.840.10008.5.1.4.1.1.2':
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- return 'CTImage'
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- elif SOPClassUID == '1.2.840.10008.5.1.4.1.1.12.2':
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- return 'XrayAngiographicImage'
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- elif SOPClassUID == '1.2.840.10008.5.1.4.1.1.3.1':
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- return 'UltrasoundMultiFrameImage'
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- else:
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- return 'Instance'
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-
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- def read_dataset(file, dialog=None):
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-
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- try:
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- ds = pydicom.dcmread(file)
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- # ds = pydicom.dcmread(file, force=True) # more robust but hides corrupted data
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- except Exception as message:
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- if dialog is not None:
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- dialog.information(message)
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- raise FileNotFoundError(message)
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-
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- type = SOPClass(ds.SOPClassUID)
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- if type == 'MRImage':
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- return MRImage(ds)
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- elif type == 'EnhancedMRImage':
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- return EnhancedMRImage(ds)
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- elif type == 'CTImage':
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- return CTImage(ds)
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- elif type == 'XrayAngiographicImage':
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- return XrayAngiographicImage(ds)
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- elif type == 'UltrasoundMultiFrameImage':
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- return UltrasoundMultiFrameImage(ds)
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- else:
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- return DbDataset(ds)
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-
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- def new_dataset(type= 'MRImage'):
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-
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- if type == 'MRImage':
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- return MRImage()
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- elif type == 'EnhancedMRImage':
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- return EnhancedMRImage()
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- elif type == 'CTImage':
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- return CTImage()
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- elif type == 'XrayAngiographicImage':
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- return XrayAngiographicImage()
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- elif type == 'UltrasoundMultiFrameImage':
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- return UltrasoundMultiFrameImage()
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- else:
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- return Dataset()