dbdicom 0.2.5__py3-none-any.whl → 0.3.0__py3-none-any.whl

dbdicom/types/study.py

@@ -1,58 +0,0 @@
-# Importing annotations to handle or sign in import type hints
-from __future__ import annotations
-
-import os
-import numpy as np
-from dbdicom.record import Record
-
-class Study(Record):
-
-    name = 'StudyInstanceUID'
-
-    def remove(self):
-        self.manager.delete_studies([self.uid])
-
-    def new_series(self, **kwargs):
-        attr = {**kwargs, **self.attributes}
-        uid, key = self.manager.new_series(parent=self.uid, key=self.key(), **attr)
-        return self.record('Series', uid, key, **attr)
-
-    def parent(self):
-        #uid = self.manager.register.at[self.key(), 'PatientID']
-        key = self.key()
-        uid = self.manager._at(key, 'PatientID')
-        return self.record('Patient', uid, key=key)
-
-    def children(self, **kwargs):
-        return self.series(**kwargs)
-
-    def new_child(self, dataset=None, **kwargs): 
-        attr = {**kwargs, **self.attributes}
-        return self.new_series(**attr)
-    
-    def new_sibling(self, suffix=None, **kwargs):
-        if suffix is not None:
-            desc = self.manager._at(self.key(), 'StudyDescription')
-            kwargs['StudyDescription'] = desc + ' [' + suffix + ']'
-        return self.parent().new_child(**kwargs)
-
-    def _copy_from(self, record, **kwargs):
-        attr = {**kwargs, **self.attributes}
-        uids = self.manager.copy_to_study(record.uid, self.uid, **attr)
-        if isinstance(uids, list):
-            return [self.record('Series', uid, **attr) for uid in uids]
-        else:
-            return self.record('Series', uids, **attr)
-
-    def zeros(*args, **kwargs): # OBSOLETE - remove
-        return zeros(*args, **kwargs)
-
-
-def zeros(study, shape, dtype='mri'): # OBSOLETE - remove
-    series = study.new_series()
-    array = np.zeros(shape, dtype=np.float32)
-    if dtype not in ['mri', 'MRImage']:
-        message = 'dbdicom can only create images of type MRImage at this stage'
-        raise ValueError(message)
-    series.set_pixel_array(array)
-    return series

dbdicom-0.2.5.dist-info/METADATA

@@ -1,71 +0,0 @@
-Metadata-Version: 2.2
-Name: dbdicom
-Version: 0.2.5
-Summary: A pythonic interface for reading and writing DICOM databases
-Author-email: Steven Sourbron <s.sourbron@sheffield.ac.uk>, Ebony Gunwhy <e.gunwhy@sheffield.ac.uk>
-Project-URL: Homepage, https://qib-sheffield.github.io/dbdicom/
-Keywords: python,medical imaging,DICOM
-Classifier: Development Status :: 3 - Alpha
-Classifier: Intended Audience :: Developers
-Classifier: Intended Audience :: Science/Research
-Classifier: Topic :: Scientific/Engineering
-Classifier: Environment :: Console
-Classifier: Operating System :: OS Independent
-Classifier: License :: OSI Approved :: Apache Software License
-Classifier: Programming Language :: Python
-Classifier: Programming Language :: Python :: 3
-Requires-Python: >=3.6
-Description-Content-Type: text/markdown
-License-File: LICENSE
-Requires-Dist: matplotlib
-Requires-Dist: nibabel
-Requires-Dist: numpy
-Requires-Dist: pandas
-Requires-Dist: pydicom
-Requires-Dist: python-gdcm
-Requires-Dist: pylibjpeg-libjpeg
-Requires-Dist: importlib-resources
-Requires-Dist: scipy
-Requires-Dist: imageio
-Requires-Dist: vreg
-Provides-Extra: extensions
-Requires-Dist: scikit-image; extra == "extensions"
-Requires-Dist: itk-elastix; extra == "extensions"
-Requires-Dist: dipy; extra == "extensions"
-Requires-Dist: scikit-learn; extra == "extensions"
-
-`dbdicom` is a Pythonic interface for reading and writing DICOM databases.
-
-# Installation
-
-`pip install dbdicom`
-
-# Documentation
-
-For more detail, see the current [dbdicom documentation](https://qib-sheffield.github.io/dbdicom/).
-
-# Ambition
-
-The DICOM format is the universally recognised standard for medical imaging, 
-but working with DICOM data remains a challenging task for data scientists. 
-
-``dbdicom`` aims to provide an intuitive programming interface for reading and 
-writing DICOM databases - replacing unfamiliar DICOM-native concepts by 
-pythonic language and syntax. 
-
-# Disclaimer
-
-`dbdicom` is developed in public and currently trialled in ongoing 
-multi-centre clinical studies 
-[iBEAt](https://bmcnephrol.biomedcentral.com/articles/10.1186/s12882-020-01901-x>) 
-and [AFiRM](https://www.uhdb.nhs.uk/afirm-study/). However, ``dbdicom`` is 
-work in progress and **not yet sufficiently stable for wider use**. Current 
-dissemination activities, such as on the 
-[ISMRM (Toronto 2023)](https://www.ismrm.org/23m/), are limited in scope and 
-intended to get early feedback from the community. 
-
-
-
-
-
-

dbdicom-0.2.5.dist-info/RECORD

@@ -1,66 +0,0 @@
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-dbdicom/create.py,sha256=v_hLU-5OtJn38FSUDw7d6B0bCIg1LQB49449aG6Jrhs,16518
-dbdicom/dro.py,sha256=onVacXzCqFj6MdKOAAIB8jE-AVcrdbrJHE60sihAuzY,8138
-dbdicom/manager.py,sha256=dn09ieznzTThhvcSBsLLwW5kAS6iWRTau-fhSlXyWhQ,83685
-dbdicom/message.py,sha256=kHcb-WuK_SzIqX76X55YIqSbTn3OdFC052qDkaKfIC8,3581
-dbdicom/pipelines.py,sha256=keBsBEjEipfu9reh3ExhHT2sgRksbL5MuRDHF4OywEI,2280
-dbdicom/record.py,sha256=p5WH1f5Bearn5ZHdCT9h11BUfo5O9GuSz1Dk8gH4BLM,66387
-dbdicom/ds/__init__.py,sha256=gX_ui37gPc_A9h0ZsBYj1-Uh7QdlmtBGrbcbXuOM8Bk,459
-dbdicom/ds/create.py,sha256=_np1bXXH6lfls6JSrPPbgy8X8q6QOj5s83tYUIAaEUk,2132
-dbdicom/ds/dataset.py,sha256=T4SeXSz6aPgK9T7kmk8IN1hvuKfSQ-E-_CrhcXKaQ4E,29347
-dbdicom/ds/dictionaries.py,sha256=g_9EB5jXBmzxp0GFhYC6lQ-tKwxje03ukV5EAH3E_l0,23717
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-dbdicom/ds/types/enhanced_mr_image.py,sha256=lTvLhMpCiDauAov_IW5epCFKKRhgLfy2d0oC2uab0wc,31336
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-dbdicom/ds/types/ultrasound_multiframe_image.py,sha256=9x2G4pRFYXSoxnaAMLF8okusSkWsSzCdGr5jltxD0Wc,3213
-dbdicom/ds/types/xray_angiographic_image.py,sha256=KhDDVVsZ3himE1P6qFdi401rYcbWCyGZx7inqg-v8oc,3676
-dbdicom/extensions/__init__.py,sha256=ag6Qs2g3g9VHYF1WKsGxMpv_HgbqjfPn_UzjoEaKG-0,115
-dbdicom/extensions/dipy.py,sha256=CrSjU14JwNpMP7AIH-CR3wkoQB19MYbS4efOEVczurQ,16806
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-dbdicom/extensions/skimage.py,sha256=hP2get4UTpu0ZSlbAvQmwaKRvGupHLn39L0BctgzZ-0,38563
-dbdicom/extensions/sklearn.py,sha256=KxxAlzh8ZI7YBkLS529k9VaAObCCVZT8exvEQThcYCY,9351
-dbdicom/extensions/vreg.py,sha256=PbCqTRsLKmbksRYsM_piBrcJL2XV89_jenw85Ozjzwk,67522
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-dbdicom/external/dcm4che/bin/deidentify,sha256=64MNIEpp-CWzFSb6TV0KtyCBvD7XyEsovRjBeyxDqSc,1698
-dbdicom/external/dcm4che/bin/deidentify.bat,sha256=kVXUkcy1C4Y3KjC2NJwmmR0pufSJWmaof_LR5CTAxMg,1455
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-dbdicom/external/dcm4che/etc/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-dbdicom/external/dcm4che/etc/emf2sf/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-dbdicom/external/dcm4che/etc/emf2sf/log4j.properties,sha256=3hHcBFt2oNRjvHtix5bfuEsnKfdv5IYOkbsyoY9g7cM,223
-dbdicom/external/dcm4che/lib/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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-dbdicom/external/dcm4che/lib/dcm4che-emf-5.23.1.jar,sha256=fcspodANPlRz-3EIx3TEZWU45JDP4RXzLuWbFoQEPMY,13418
-dbdicom/external/dcm4che/lib/dcm4che-tool-common-5.23.1.jar,sha256=3SN3NSTf4AIHuUCsk_5E2wXd3MuFvQZIYSSq1PHcgNM,21301
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-dbdicom/external/dcm4che/lib/log4j-1.2.17.jar,sha256=HTFpZEVpdyBScJF1Q2kIKmZRvUl4G2AF3rlOVnU0Bvk,489884
-dbdicom/external/dcm4che/lib/slf4j-api-1.7.30.jar,sha256=zboHlk0btAoHYUhcax6ML4_Z6x0ZxTkorA1_lRAQXFc,41472
-dbdicom/external/dcm4che/lib/slf4j-log4j12-1.7.30.jar,sha256=TUHgHEDK-KbHSt0rBzBV2KTOHDDlgVQXexPxLXirvns,12211
-dbdicom/external/dcm4che/lib/macosx-x86-64/libopencv_java.jnilib,sha256=A2uOWIUQX3KcG850ElpW4lVtn2uyPpJHZq9cPlpJjMY,15137664
-dbdicom/external/dcm4che/lib/windows-x86/clib_jiio.dll,sha256=C2dAjNyefOm3POrUxorEF6T-FTztpo0nfGAsUrDyQyg,720896
-dbdicom/external/dcm4che/lib/windows-x86/clib_jiio_sse2.dll,sha256=uD9GLN_hPf9mM9APzlp9j6770awKP6xnlaooMrxHpkg,1089536
-dbdicom/external/dcm4che/lib/windows-x86/clib_jiio_util.dll,sha256=wi4yyrI1gTRo_bBpj0E097BQBiHZd8IqVifKr6kfkRE,40960
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-dbdicom/external/dcm4che/lib/windows-x86-64/opencv_java.dll,sha256=TmjW2SbG4MR3GQ95T8xCVVDLgsdKukgaHBPUvWkfXp8,11039232
-dbdicom/types/database.py,sha256=Ur-VE6Uixw4nV6QUY8fnMSUgDvvk54KhiUvbmS3bGuE,3066
-dbdicom/types/instance.py,sha256=_j38VQqjaJITQX98WyqBqGXvYcpzRP8TRmpZ7wwu5-E,7655
-dbdicom/types/patient.py,sha256=YtBTwJDo8EiquJ2vLcyBW7Pzz7EISKhzvxq2506QSNo,1312
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-dbdicom-0.2.5.dist-info/METADATA,sha256=T932J-bTV2jel3CLEtweTqxtbv3pFErbb8s6UuMVVgA,2509
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