dbdicom 0.2.0__py3-none-any.whl → 0.2.3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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- dbdicom/__init__.py +5 -3
- dbdicom/create.py +77 -70
- dbdicom/dro.py +174 -0
- dbdicom/ds/dataset.py +30 -3
- dbdicom/ds/types/mr_image.py +18 -7
- dbdicom/extensions/__init__.py +10 -0
- dbdicom/{wrappers → extensions}/dipy.py +191 -205
- dbdicom/extensions/elastix.py +503 -0
- dbdicom/extensions/matplotlib.py +107 -0
- dbdicom/extensions/numpy.py +271 -0
- dbdicom/{wrappers → extensions}/scipy.py +131 -32
- dbdicom/{wrappers → extensions}/skimage.py +1 -1
- dbdicom/extensions/sklearn.py +243 -0
- dbdicom/extensions/vreg.py +1390 -0
- dbdicom/external/dcm4che/bin/emf2sf +57 -57
- dbdicom/manager.py +91 -36
- dbdicom/pipelines.py +66 -0
- dbdicom/record.py +447 -80
- dbdicom/types/instance.py +46 -20
- dbdicom/types/series.py +2182 -399
- dbdicom/utils/image.py +152 -21
- dbdicom/utils/variables.py +8 -2
- dbdicom/utils/vreg.py +327 -135
- dbdicom-0.2.3.dist-info/METADATA +88 -0
- dbdicom-0.2.3.dist-info/RECORD +67 -0
- {dbdicom-0.2.0.dist-info → dbdicom-0.2.3.dist-info}/WHEEL +1 -1
- dbdicom/external/__pycache__/__init__.cpython-310.pyc +0 -0
- dbdicom/external/__pycache__/__init__.cpython-37.pyc +0 -0
- dbdicom/external/dcm4che/__pycache__/__init__.cpython-310.pyc +0 -0
- dbdicom/external/dcm4che/__pycache__/__init__.cpython-37.pyc +0 -0
- dbdicom/external/dcm4che/bin/__pycache__/__init__.cpython-310.pyc +0 -0
- dbdicom/external/dcm4che/bin/__pycache__/__init__.cpython-37.pyc +0 -0
- dbdicom/external/dcm4che/lib/linux-x86/libclib_jiio.so +0 -0
- dbdicom/external/dcm4che/lib/linux-x86-64/libclib_jiio.so +0 -0
- dbdicom/external/dcm4che/lib/linux-x86-64/libopencv_java.so +0 -0
- dbdicom/external/dcm4che/lib/solaris-sparc/libclib_jiio.so +0 -0
- dbdicom/external/dcm4che/lib/solaris-sparc/libclib_jiio_vis.so +0 -0
- dbdicom/external/dcm4che/lib/solaris-sparc/libclib_jiio_vis2.so +0 -0
- dbdicom/external/dcm4che/lib/solaris-sparcv9/libclib_jiio.so +0 -0
- dbdicom/external/dcm4che/lib/solaris-sparcv9/libclib_jiio_vis.so +0 -0
- dbdicom/external/dcm4che/lib/solaris-sparcv9/libclib_jiio_vis2.so +0 -0
- dbdicom/external/dcm4che/lib/solaris-x86/libclib_jiio.so +0 -0
- dbdicom/external/dcm4che/lib/solaris-x86-64/libclib_jiio.so +0 -0
- dbdicom/wrappers/__init__.py +0 -7
- dbdicom/wrappers/elastix.py +0 -855
- dbdicom/wrappers/numpy.py +0 -119
- dbdicom/wrappers/sklearn.py +0 -151
- dbdicom/wrappers/vreg.py +0 -273
- dbdicom-0.2.0.dist-info/METADATA +0 -276
- dbdicom-0.2.0.dist-info/RECORD +0 -81
- {dbdicom-0.2.0.dist-info → dbdicom-0.2.3.dist-info}/LICENSE +0 -0
- {dbdicom-0.2.0.dist-info → dbdicom-0.2.3.dist-info}/top_level.txt +0 -0
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Metadata-Version: 2.1
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Name: dbdicom
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Version: 0.2.3
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Summary: A pythonic interface for reading and writing DICOM databases
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Author-email: Steven Sourbron <s.sourbron@sheffield.ac.uk>, Ebony Gunwhy <e.gunwhy@sheffield.ac.uk>
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Project-URL: Homepage, https://qib-sheffield.github.io/dbdicom/
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Keywords: python,medical imaging,DICOM
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Classifier: Development Status :: 3 - Alpha
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Classifier: Intended Audience :: Developers
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Classifier: Intended Audience :: Science/Research
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Classifier: Topic :: Scientific/Engineering
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Classifier: Environment :: Console
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Classifier: Operating System :: OS Independent
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Classifier: License :: OSI Approved :: Apache Software License
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Classifier: Programming Language :: Python
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Classifier: Programming Language :: Python :: 3
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Requires-Python: >=3.6
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Requires-Dist: matplotlib
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Requires-Dist: nibabel
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Requires-Dist: numpy<=1.26.4
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Requires-Dist: pandas
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Requires-Dist: pydicom
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Requires-Dist: python-gdcm
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Requires-Dist: pylibjpeg-libjpeg
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Requires-Dist: importlib-resources
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Requires-Dist: scipy
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Requires-Dist: imageio
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Provides-Extra: docs
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Requires-Dist: sphinx; extra == "docs"
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Requires-Dist: docutils; extra == "docs"
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Requires-Dist: sphinxcontrib-devhelp; extra == "docs"
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Requires-Dist: sphinxcontrib-jsmath; extra == "docs"
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Requires-Dist: sphinxcontrib-qthelp; extra == "docs"
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Requires-Dist: sphinxcontrib-serializinghtml; extra == "docs"
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Requires-Dist: sphinx-gallery; extra == "docs"
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Provides-Extra: extensions
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Requires-Dist: scipy; extra == "extensions"
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Requires-Dist: scikit-image<=0.19.0; extra == "extensions"
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Requires-Dist: SimpleITK-SimpleElastix; extra == "extensions"
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Requires-Dist: itk-elastix; extra == "extensions"
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Requires-Dist: dipy; extra == "extensions"
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Requires-Dist: scikit-learn; extra == "extensions"
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`dbdicom` is a Pythonic interface for reading and writing DICOM databases.
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# Installation
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`pip install dbdicom`
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# Documentation
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For more detail, see the current [dbdicom documentation](https://qib-sheffield.github.io/dbdicom/).
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# Ambition
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The DICOM format is the universally recognised standard for medical imaging,
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but working with DICOM data remains a challenging task for data scientists.
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``dbdicom`` aims to provide an intuitive programming interface for reading and
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writing DICOM databases - replacing unfamiliar DICOM-native concepts by
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pythonic language and syntax.
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# Disclaimer
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`dbdicom` is developed in public and currently trialled in ongoing
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multi-centre clinical studies
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[iBEAt](https://bmcnephrol.biomedcentral.com/articles/10.1186/s12882-020-01901-x>)
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and [AFiRM](https://www.uhdb.nhs.uk/afirm-study/). However, ``dbdicom`` is
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work in progress and **not yet sufficiently stable for wider use**. Current
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dissemination activities, such as on the
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[ISMRM (Toronto 2023)](https://www.ismrm.org/23m/), are limited in scope and
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intended to get early feedback from the community.
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dbdicom/__init__.py,sha256=rXC7OyQufyuAHqkUxxnw-LaQSw_Z1pZu86QNvj5wtrI,503
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dbdicom/create.py,sha256=v_hLU-5OtJn38FSUDw7d6B0bCIg1LQB49449aG6Jrhs,16518
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dbdicom/dro.py,sha256=onVacXzCqFj6MdKOAAIB8jE-AVcrdbrJHE60sihAuzY,8138
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dbdicom/manager.py,sha256=dn09ieznzTThhvcSBsLLwW5kAS6iWRTau-fhSlXyWhQ,83685
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dbdicom/message.py,sha256=kHcb-WuK_SzIqX76X55YIqSbTn3OdFC052qDkaKfIC8,3581
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dbdicom/pipelines.py,sha256=keBsBEjEipfu9reh3ExhHT2sgRksbL5MuRDHF4OywEI,2280
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dbdicom/record.py,sha256=p5WH1f5Bearn5ZHdCT9h11BUfo5O9GuSz1Dk8gH4BLM,66387
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dbdicom/ds/__init__.py,sha256=gX_ui37gPc_A9h0ZsBYj1-Uh7QdlmtBGrbcbXuOM8Bk,459
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dbdicom/ds/create.py,sha256=_np1bXXH6lfls6JSrPPbgy8X8q6QOj5s83tYUIAaEUk,2132
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dbdicom/ds/dataset.py,sha256=JL2xPQr-xI-cbirwzlG6ROH3cTj9Ruyd8L3roYfiXNA,29257
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dbdicom/ds/dictionaries.py,sha256=g_9EB5jXBmzxp0GFhYC6lQ-tKwxje03ukV5EAH3E_l0,23717
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dbdicom/ds/types/ct_image.py,sha256=2TvEl267TnIkkuJQzPLh9STeSJxKt_ZQi4SEBYmQuiI,3189
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dbdicom/ds/types/enhanced_mr_image.py,sha256=lTvLhMpCiDauAov_IW5epCFKKRhgLfy2d0oC2uab0wc,31336
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dbdicom/ds/types/mr_image.py,sha256=Eaz_jma1VQ2sh0RBWUnQX-8AgPst859e9LFhvv9Rnzw,9769
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dbdicom/ds/types/parametric_map.py,sha256=hc5ms5SarLu3ocitK4aM4dW38rbUxDWVRExFeFmZsVY,11699
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dbdicom/ds/types/ultrasound_multiframe_image.py,sha256=9x2G4pRFYXSoxnaAMLF8okusSkWsSzCdGr5jltxD0Wc,3213
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dbdicom/ds/types/xray_angiographic_image.py,sha256=KhDDVVsZ3himE1P6qFdi401rYcbWCyGZx7inqg-v8oc,3676
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dbdicom/extensions/__init__.py,sha256=YOzQYid1QHRQYSYBLYTmeRK6_LrucV6xPaumoiO_K8Q,126
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dbdicom/extensions/dipy.py,sha256=CrSjU14JwNpMP7AIH-CR3wkoQB19MYbS4efOEVczurQ,16806
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dbdicom/extensions/elastix.py,sha256=0gNgiC0RAEjLBhovgRtaLy31xxUy6rJWoapm_3tMCQ8,22522
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dbdicom/extensions/matplotlib.py,sha256=k9KK-mZW8TpW37PgoFre3yb4ffRCRrPVeQKEGZnQoXw,4218
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dbdicom/extensions/numpy.py,sha256=13PPKj-GCAstSb7uQ8_XAZ2borYkDVKhqcAs7KVA6pc,10542
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dbdicom/extensions/scipy.py,sha256=xQ3H3puoE9kF1qG5Pvl6gaQD4TdL6-f3V8Cz7z1_L0A,52884
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dbdicom/extensions/skimage.py,sha256=hP2get4UTpu0ZSlbAvQmwaKRvGupHLn39L0BctgzZ-0,38563
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dbdicom/extensions/sklearn.py,sha256=KxxAlzh8ZI7YBkLS529k9VaAObCCVZT8exvEQThcYCY,9351
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dbdicom/extensions/vreg.py,sha256=6U9l9p18Cfs67pAn3ROhalcPVioNVdB0Hi9Co-eAegU,67541
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dbdicom/external/__init__.py,sha256=XNQqfspyf6vFGedXlRKZsUB8k8E-0W19Uamwn8Aioxo,316
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dbdicom/external/dcm4che/README.md,sha256=0aAGRs36W3_0s5LzWHRGf_tqariS_JP4iJggaxnD4Xw,8987
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dbdicom/external/dcm4che/__init__.py,sha256=YwpeMCLrxffGOkchsGjgAuB6ia3VX_tx9Y7ru9EWtoY,35
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dbdicom/external/dcm4che/bin/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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dbdicom/external/dcm4che/bin/deidentify,sha256=64MNIEpp-CWzFSb6TV0KtyCBvD7XyEsovRjBeyxDqSc,1698
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dbdicom/external/dcm4che/bin/deidentify.bat,sha256=kVXUkcy1C4Y3KjC2NJwmmR0pufSJWmaof_LR5CTAxMg,1455
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dbdicom/external/dcm4che/bin/emf2sf,sha256=svCzkZ-QhdVTV0NNHOpBiwNBMODVWZHJIFA7cWaN2bM,1622
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dbdicom/external/dcm4che/bin/emf2sf.bat,sha256=Vh0ry9KNJX_WXcyCrLSxbJ_6Crot9rjmwi__u2GZqLY,1375
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dbdicom/external/dcm4che/etc/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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dbdicom/external/dcm4che/etc/emf2sf/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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dbdicom/external/dcm4che/lib/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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dbdicom/external/dcm4che/lib/commons-cli-1.4.jar,sha256=_Tx8lUWpzbIFHR-RVcT3ax5KxaVzBEBKbu21eP-6cyg,53820
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dbdicom/external/dcm4che/lib/windows-x86/clib_jiio_util.dll,sha256=wi4yyrI1gTRo_bBpj0E097BQBiHZd8IqVifKr6kfkRE,40960
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dbdicom/external/dcm4che/lib/windows-x86/opencv_java.dll,sha256=QanyzLy0Cd79-aOVPwOcXwikUYeutne0Au-Um91_B4M,8505856
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dbdicom/external/dcm4che/lib/windows-x86-64/opencv_java.dll,sha256=TmjW2SbG4MR3GQ95T8xCVVDLgsdKukgaHBPUvWkfXp8,11039232
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dbdicom/types/database.py,sha256=Ur-VE6Uixw4nV6QUY8fnMSUgDvvk54KhiUvbmS3bGuE,3066
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dbdicom/types/instance.py,sha256=DsQOiHmX9W2cffvJUqE25gBAIlMGSm8Z33F-HKk3fcI,6881
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dbdicom/types/patient.py,sha256=YtBTwJDo8EiquJ2vLcyBW7Pzz7EISKhzvxq2506QSNo,1312
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dbdicom/types/series.py,sha256=OlDHfJs2NX5kpioNvbQv2QVCTITyWr_1CTNyipAe8Zs,100936
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dbdicom/types/study.py,sha256=iX6gjA905DBvmTEwxSuppp_E7XXkTHvN3ezAnu362Es,2031
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dbdicom/utils/dcm4che.py,sha256=Vxq8NYWWK3BuqJkzhBQ89oMqzJlnxqTxgsgTo_Frznc,2317
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